Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47209 * 2 1 4 4 C 1.52999 * 109.46701 * 119.99951 * 2 1 3 5 5 H 1.08998 * 109.47244 * 62.18146 * 4 2 1 6 6 C 1.50699 * 109.47342 * 302.17814 * 4 2 1 7 7 O 1.21288 * 119.99981 * 273.19213 * 6 4 2 8 8 N 1.34773 * 120.00082 * 93.18932 * 6 4 2 9 9 C 1.46494 * 119.99693 * 5.30662 * 8 6 4 10 10 C 1.46505 * 120.00043 * 185.02961 * 8 6 4 11 11 C 1.50696 * 109.47151 * 270.27882 * 10 8 6 12 12 H 1.08002 * 119.99671 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00039 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99991 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47551 * 89.99774 * 15 13 11 17 17 H 1.48507 * 109.47106 * 209.99518 * 15 13 11 18 18 H 1.48500 * 109.47315 * 329.99707 * 15 13 11 19 19 N 1.46910 * 109.46861 * 182.17886 * 4 2 1 20 20 C 1.46848 * 110.99721 * 304.21091 * 19 4 2 21 21 C 1.53039 * 109.51879 * 174.15961 * 20 19 4 22 22 C 1.53114 * 109.28248 * 59.17622 * 21 20 19 23 23 C 1.53120 * 109.16100 * 302.34683 * 22 21 20 24 24 C 1.46843 * 111.00054 * 179.97438 * 19 4 2 25 25 H 1.08994 * 109.46857 * 298.27680 * 1 2 3 26 26 H 1.09002 * 109.47110 * 58.27893 * 1 2 3 27 27 H 1.08998 * 109.47073 * 178.27534 * 1 2 3 28 28 H 1.08999 * 109.46654 * 239.99514 * 2 1 3 29 29 H 1.08995 * 109.47392 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47005 * 299.99796 * 3 2 1 31 31 H 1.09001 * 109.47415 * 59.99453 * 3 2 1 32 32 H 1.09005 * 109.47450 * 274.43182 * 9 8 6 33 33 H 1.08997 * 109.47491 * 34.43521 * 9 8 6 34 34 H 1.09006 * 109.47208 * 154.43580 * 9 8 6 35 35 H 1.09004 * 109.46766 * 30.27508 * 10 8 6 36 36 H 1.09002 * 109.46990 * 150.27670 * 10 8 6 37 37 H 0.96997 * 120.00565 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46084 * 294.17539 * 20 19 4 39 39 H 1.09000 * 109.46378 * 54.14681 * 20 19 4 40 40 H 1.09005 * 109.50090 * 299.23399 * 21 20 19 41 41 H 1.08998 * 109.50033 * 179.11961 * 21 20 19 42 42 H 1.08997 * 109.52793 * 182.43600 * 22 21 20 43 43 H 1.09007 * 109.57339 * 62.28175 * 22 21 20 44 44 H 1.08998 * 109.50310 * 297.71226 * 23 22 21 45 45 H 1.09005 * 109.53315 * 177.60969 * 23 22 21 46 46 H 1.08996 * 109.46313 * 305.85890 * 24 19 4 47 47 H 1.08998 * 109.46082 * 65.83880 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7089 -1.7596 1.2299 6 6 1.4940 -0.0427 2.4791 7 8 2.0831 0.9005 2.9633 8 7 0.3512 -0.4839 3.0409 9 6 -0.2983 -1.6926 2.5277 10 6 -0.2384 0.2417 4.1689 11 6 0.3169 -0.3007 5.4605 12 1 1.0366 -1.1057 5.4430 13 6 -0.0946 0.2301 6.6646 14 7 -0.9714 1.2101 6.6859 15 14 0.5931 -0.4427 8.2657 16 1 1.8174 0.3123 8.6348 17 1 -0.4213 -0.2965 9.3405 18 1 0.9300 -1.8789 8.0951 19 7 3.5081 -0.6758 1.2759 20 6 4.0745 -1.2397 0.0440 21 6 5.5923 -1.0441 0.0427 22 6 6.1927 -1.7395 1.2676 23 6 5.5509 -1.1679 2.5349 24 6 4.0343 -1.3595 2.4642 25 1 -0.3633 0.4868 0.9050 26 1 -0.3633 0.5403 -0.8742 27 1 -0.3633 -1.0272 -0.0309 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 -0.9445 -1.4301 1.6900 33 1 0.4613 -2.3990 2.1930 34 1 -0.8950 -2.1480 3.3181 35 1 0.0040 1.3012 4.0857 36 1 -1.3209 0.1145 4.1568 37 1 -1.2607 1.5838 7.5330 38 1 3.8453 -2.3041 -0.0070 39 1 3.6424 -0.7335 -0.8193 40 1 5.8220 0.0208 0.0797 41 1 6.0141 -1.4767 -0.8645 42 1 7.2685 -1.5662 1.2941 43 1 5.9976 -2.8105 1.2117 44 1 5.7800 -0.1050 2.6112 45 1 5.9432 -1.6884 3.4086 46 1 3.5730 -0.9404 3.3584 47 1 3.8056 -2.4234 2.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354875983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -57.079308 kcal Electronic energy + Delta-G solvation = -24518.604707 eV Core-core repulsion = 21314.295447 eV Total energy + Delta-G solvation = -3204.309260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56723 -39.30261 -36.67979 -36.54158 -34.66736 -33.38629 -31.73220 -30.17931 -28.13379 -27.92392 -27.06144 -25.11746 -24.21007 -23.67346 -21.57655 -20.60209 -19.28390 -18.72887 -17.92926 -17.66917 -16.95902 -16.55554 -15.96146 -15.57382 -15.36184 -15.17146 -14.96279 -14.51199 -14.33688 -14.22354 -13.87313 -13.74396 -13.63285 -13.50232 -13.34497 -13.13551 -12.99872 -12.80263 -12.66966 -12.58065 -12.20909 -12.11798 -12.08060 -11.84511 -11.75848 -11.67342 -11.54520 -11.31193 -11.08023 -10.66467 -10.30373 -9.35286 -9.15515 -8.23212 -6.37921 1.32899 1.36426 1.45625 1.89703 2.28446 2.40530 2.93817 3.05652 3.61541 3.87740 3.88914 3.90666 4.04116 4.08937 4.26941 4.30843 4.33685 4.42211 4.45198 4.57450 4.65736 4.69768 4.74545 4.81515 4.87274 4.89395 4.95966 4.99844 5.01667 5.04487 5.09952 5.10652 5.18874 5.21429 5.23577 5.32457 5.43123 5.50411 5.55535 5.58267 5.85238 6.03288 6.06507 6.23881 6.69952 6.85504 7.28634 7.59712 8.83414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.005835 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.714732 B = 4797.104175 C = 5861.781552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 C -0.133 4.133 4 C 0.079 3.921 5 H 0.073 0.927 6 C 0.511 3.489 7 O -0.574 6.574 8 N -0.611 5.611 9 C 0.074 3.926 10 C 0.265 3.735 11 C -0.538 4.538 12 H 0.048 0.952 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.272 1.272 18 H -0.263 1.263 19 N -0.529 5.529 20 C 0.051 3.949 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.112 4.112 24 C 0.057 3.943 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.066 0.934 35 H -0.007 1.007 36 H 0.022 0.978 37 H 0.267 0.733 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.033 0.967 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.353 -9.829 -17.916 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.033 4.033 5 H 0.090 0.910 6 C 0.299 3.701 7 O -0.453 6.453 8 N -0.344 5.344 9 C -0.068 4.068 10 C 0.144 3.856 11 C -0.577 4.577 12 H 0.066 0.934 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.788 3.212 16 H -0.208 1.208 17 H -0.197 1.197 18 H -0.187 1.187 19 N -0.254 5.254 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.071 4.071 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.011 0.989 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.677 -8.744 -17.512 21.411 hybrid contribution -0.331 -0.504 1.681 1.786 sum 8.346 -9.249 -15.831 20.145 Atomic orbital electron populations 1.22079 0.94253 1.03118 1.01823 1.21152 0.96144 0.96624 0.95434 1.21673 1.01699 0.95490 1.00220 1.21801 0.89114 0.98831 0.93531 0.90960 1.20880 0.80085 0.84070 0.85079 1.90632 1.58801 1.31028 1.64833 1.48174 1.25017 1.28007 1.33188 1.22079 0.98442 0.86159 1.00116 1.18666 0.92481 0.90959 0.83494 1.21656 1.24993 1.18891 0.92133 0.93401 1.25824 0.95258 0.95142 1.02812 1.70043 1.32694 1.26464 1.27579 0.85472 0.78062 0.78973 0.78651 1.20784 1.19695 1.18721 1.61570 1.03925 1.56766 1.03181 1.22331 0.96032 0.97758 0.91461 1.21586 0.93672 1.01130 0.98613 1.21553 1.00115 0.99829 0.93582 1.21519 0.93009 1.01153 0.99279 1.22001 0.96942 0.95460 0.92654 0.95187 0.90408 0.90165 0.86930 0.92052 0.91411 0.96322 0.90307 0.90268 0.91554 0.98878 0.95980 0.92414 0.93898 0.88855 0.92290 0.88886 0.90589 0.91375 0.93005 0.91354 0.94843 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 7.52 71.98 0.54 -3.10 16 2 C -0.07 -1.85 2.22 -10.79 -0.02 -1.87 16 3 C -0.13 -3.90 8.60 71.98 0.62 -3.28 16 4 C 0.08 2.40 1.37 44.17 0.06 2.46 16 5 H 0.07 1.92 5.79 -2.39 -0.01 1.91 16 6 C 0.51 22.09 3.87 87.66 0.34 22.43 16 7 O -0.57 -31.16 14.44 -3.05 -0.04 -31.20 16 8 N -0.61 -26.86 2.22 -851.13 -1.89 -28.74 16 9 C 0.07 2.34 9.20 127.77 1.18 3.51 16 10 C 0.27 14.79 5.10 85.63 0.44 15.23 16 11 C -0.54 -32.03 9.38 25.60 0.24 -31.79 16 12 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 13 C 0.01 0.50 5.46 84.65 0.46 0.97 16 14 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 15 Si 0.96 46.20 29.54 68.60 2.03 48.22 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 19 N -0.53 -15.66 3.43 -875.52 -3.00 -18.66 16 20 C 0.05 1.03 4.95 86.33 0.43 1.45 16 21 C -0.11 -2.00 6.09 30.65 0.19 -1.82 16 22 C -0.11 -2.14 6.00 30.67 0.18 -1.96 16 23 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 24 C 0.06 1.84 5.19 86.33 0.45 2.29 16 25 H 0.03 0.93 6.20 -2.39 -0.01 0.92 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.50 6.72 -2.39 -0.02 1.48 16 28 H 0.11 1.99 6.34 -2.39 -0.02 1.97 16 29 H 0.06 1.83 7.30 -2.39 -0.02 1.81 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.02 0.70 6.58 -2.39 -0.02 0.68 16 32 H 0.08 2.02 5.56 -2.38 -0.01 2.01 16 33 H 0.08 2.05 6.12 -2.39 -0.01 2.03 16 34 H 0.07 2.18 8.04 -2.38 -0.02 2.16 16 35 H -0.01 -0.45 7.51 -2.39 -0.02 -0.46 16 36 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.62 5.83 -2.39 -0.01 1.60 16 40 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.03 1.41 6.44 -2.39 -0.02 1.40 16 47 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.11 349.32 3.59 -72.53 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.93 Total: 13.24 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.28 Total: 1.74 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.60 Total: -104.53 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.04 Total: -31.20 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.11 3.59 -72.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354875983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.446 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds