Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.52994 * 109.47257 * 239.99539 * 2 1 3 5 5 H 1.08999 * 109.47163 * 63.96466 * 4 2 1 6 6 C 1.50699 * 109.47416 * 183.96381 * 4 2 1 7 7 O 1.21288 * 119.99423 * 76.19086 * 6 4 2 8 8 N 1.34771 * 120.00049 * 256.19040 * 6 4 2 9 9 C 1.46495 * 120.00087 * 354.61198 * 8 6 4 10 10 C 1.46503 * 119.99681 * 174.60536 * 8 6 4 11 11 C 1.50707 * 109.47133 * 90.00477 * 10 8 6 12 12 H 1.08004 * 119.99494 * 359.97438 * 11 10 8 13 13 C 1.37868 * 120.00190 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00093 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00114 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47277 * 59.99329 * 15 13 11 17 17 H 1.48494 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46852 * 299.99472 * 15 13 11 19 19 N 1.46905 * 109.47185 * 303.96810 * 4 2 1 20 20 C 1.46854 * 110.99546 * 299.20758 * 19 4 2 21 21 C 1.53036 * 109.52029 * 174.15977 * 20 19 4 22 22 C 1.53121 * 109.27949 * 59.17978 * 21 20 19 23 23 C 1.53118 * 109.16081 * 302.34484 * 22 21 20 24 24 C 1.46846 * 111.00192 * 175.00167 * 19 4 2 25 25 H 1.09004 * 109.46495 * 60.00123 * 1 2 3 26 26 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47120 * 300.00892 * 1 2 3 28 28 H 1.09005 * 109.47000 * 119.99725 * 2 1 3 29 29 H 1.09000 * 109.47673 * 54.81753 * 3 2 1 30 30 H 1.09001 * 109.47242 * 174.82356 * 3 2 1 31 31 H 1.09005 * 109.46975 * 294.81967 * 3 2 1 32 32 H 1.08998 * 109.47729 * 84.55254 * 9 8 6 33 33 H 1.09001 * 109.46800 * 204.55284 * 9 8 6 34 34 H 1.08999 * 109.47298 * 324.54725 * 9 8 6 35 35 H 1.09003 * 109.47106 * 210.00316 * 10 8 6 36 36 H 1.08999 * 109.47544 * 330.00272 * 10 8 6 37 37 H 0.96996 * 120.00032 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.46287 * 294.17388 * 20 19 4 39 39 H 1.09000 * 109.46117 * 54.14870 * 20 19 4 40 40 H 1.09003 * 109.50515 * 299.23813 * 21 20 19 41 41 H 1.08996 * 109.53503 * 179.13586 * 21 20 19 42 42 H 1.08997 * 109.52587 * 182.44137 * 22 21 20 43 43 H 1.09001 * 109.57567 * 62.28040 * 22 21 20 44 44 H 1.09002 * 109.50362 * 297.71461 * 23 22 21 45 45 H 1.09005 * 109.53845 * 177.60996 * 23 22 21 46 46 H 1.09004 * 109.45752 * 305.85263 * 24 19 4 47 47 H 1.08996 * 109.46737 * 65.82802 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.7359 -0.1682 -2.1377 6 6 3.5438 -0.8070 -1.2010 7 8 4.0822 -1.6141 -0.4732 8 7 4.2903 0.0133 -1.9667 9 6 3.6428 0.9053 -2.9316 10 6 5.7493 0.0128 -1.8340 11 6 6.3398 -0.9979 -2.7832 12 1 5.6929 -1.5818 -3.4212 13 6 7.7057 -1.1779 -2.8364 14 7 8.4934 -0.4672 -2.0591 15 14 8.4376 -2.4302 -4.0135 16 1 8.0680 -2.0747 -5.4071 17 1 9.9164 -2.4307 -3.8788 18 1 7.9102 -3.7804 -3.6905 19 7 1.4737 -2.0759 -1.2979 20 6 1.8788 -2.8583 -0.1230 21 6 1.1567 -4.2075 -0.1332 22 6 1.5111 -4.9609 -1.4183 23 6 1.1233 -4.1039 -2.6265 24 6 1.8464 -2.7576 -2.5440 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6030 1.9825 0.8399 30 1 3.1261 1.4439 0.0927 31 1 1.7545 1.9288 -0.9328 32 1 3.3301 1.8200 -2.4280 33 1 4.3458 1.1511 -3.7277 34 1 2.7710 0.4087 -3.3574 35 1 6.1361 1.0038 -2.0717 36 1 6.0211 -0.2474 -0.8110 37 1 9.4543 -0.5942 -2.0963 38 1 2.9560 -3.0227 -0.1500 39 1 1.6173 -2.3132 0.7840 40 1 0.0797 -4.0442 -0.0924 41 1 1.4688 -4.7945 0.7305 42 1 0.9651 -5.9037 -1.4502 43 1 2.5826 -5.1595 -1.4415 44 1 0.0458 -3.9389 -2.6249 45 1 1.4117 -4.6161 -3.5444 46 1 1.5614 -2.1395 -3.3954 47 1 2.9237 -2.9226 -2.5596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354875985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -40.424066 kcal Electronic energy + Delta-G solvation = -24624.873066 eV Core-core repulsion = 21421.286032 eV Total energy + Delta-G solvation = -3203.587034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31852 -37.67163 -35.57415 -34.85918 -32.59121 -32.23539 -30.53361 -28.34311 -26.90254 -26.68756 -25.51307 -23.32126 -23.05951 -22.25097 -20.02031 -19.59026 -18.21983 -16.61786 -16.52731 -16.14402 -15.31486 -14.96544 -14.53589 -14.24145 -14.14123 -13.83446 -13.48285 -13.31381 -13.15288 -12.86901 -12.33294 -12.25449 -12.21887 -12.05342 -11.94873 -11.82101 -11.66380 -11.22949 -11.09170 -10.91509 -10.82748 -10.77704 -10.66552 -10.54461 -10.48382 -10.15620 -10.09295 -9.87362 -9.65171 -9.39191 -8.44696 -7.71618 -7.52904 -6.05383 -4.10142 3.29846 3.33675 3.34651 3.39756 3.96834 4.10925 4.43553 4.89588 5.00495 5.02411 5.12857 5.15880 5.19565 5.28903 5.42401 5.47041 5.55188 5.67604 5.71682 5.74747 5.76682 5.80837 5.88910 5.91230 5.99533 6.03194 6.08618 6.12486 6.15535 6.19454 6.22449 6.26065 6.36422 6.41771 6.47849 6.54184 6.73001 7.02080 7.26840 7.34344 7.41660 7.55464 7.90622 8.22445 8.42167 8.88997 9.09633 9.54924 11.02527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.006337 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.810854 B = 4417.318640 C = 5539.847014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.150 4.150 4 C 0.065 3.935 5 H 0.096 0.904 6 C 0.481 3.519 7 O -0.537 6.537 8 N -0.599 5.599 9 C 0.082 3.918 10 C 0.246 3.754 11 C -0.524 4.524 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 N -0.509 5.509 20 C 0.027 3.973 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.110 4.110 24 C 0.046 3.954 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 -0.102 0.922 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.047 4.047 5 H 0.114 0.886 6 C 0.267 3.733 7 O -0.415 6.415 8 N -0.331 5.331 9 C -0.063 4.063 10 C 0.126 3.874 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.202 1.202 19 N -0.233 5.233 20 C -0.100 4.100 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.082 4.082 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.113 -0.449 1.347 17.172 hybrid contribution 1.491 -0.656 -0.866 1.844 sum -15.622 -1.105 0.481 15.669 Atomic orbital electron populations 1.21686 0.94089 1.02555 1.00664 1.21017 0.96539 0.95537 0.96764 1.21908 1.01677 0.95518 1.01690 1.22069 0.90222 0.91857 1.00505 0.88624 1.21472 0.89745 0.81322 0.80810 1.90543 1.73973 1.35649 1.41327 1.48299 1.09549 1.38168 1.37058 1.21707 0.97934 0.93322 0.93298 1.19260 0.72618 0.97069 0.98405 1.21363 0.91679 1.21477 1.21721 0.92731 1.24925 0.96985 0.96160 0.95988 1.69918 1.04265 1.40560 1.38697 0.86587 0.77919 0.81954 0.81135 1.20254 1.21130 1.20242 1.62453 1.56811 1.01186 1.02815 1.22628 1.01842 0.93062 0.92499 1.21575 1.00397 0.95952 0.97164 1.21571 1.01362 0.97904 0.95127 1.21507 1.00527 0.94865 0.97864 1.22137 0.98809 0.95236 0.92006 0.93053 0.91365 0.93480 0.90594 0.92456 0.92290 0.92497 0.93546 0.90677 0.92718 0.95144 0.94170 0.92679 0.89493 0.91204 0.92053 0.92071 0.92420 0.92062 0.91512 0.91932 0.91312 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.99 37.16 0.33 -1.15 16 2 C -0.08 -1.08 2.02 -90.62 -0.18 -1.26 16 3 C -0.15 -1.92 8.50 37.16 0.32 -1.60 16 4 C 0.07 1.02 1.45 -68.87 -0.10 0.92 16 5 H 0.10 1.36 5.52 -51.93 -0.29 1.07 16 6 C 0.48 9.80 4.55 -10.99 -0.05 9.75 16 7 O -0.54 -13.12 13.10 5.55 0.07 -13.05 16 8 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 9 C 0.08 1.30 9.85 59.84 0.59 1.89 16 10 C 0.25 6.44 5.10 -5.19 -0.03 6.41 16 11 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 12 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 N -0.51 -7.66 3.71 -228.08 -0.85 -8.51 16 20 C 0.03 0.42 4.50 -3.83 -0.02 0.41 16 21 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 22 C -0.12 -1.59 6.00 -26.61 -0.16 -1.75 16 23 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 24 C 0.05 0.71 5.13 -3.83 -0.02 0.69 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.16 6.51 -51.93 -0.34 0.82 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 31 H 0.06 0.65 7.40 -51.93 -0.38 0.26 16 32 H 0.05 0.63 7.03 -51.93 -0.37 0.27 16 33 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 34 H 0.05 0.75 6.27 -51.93 -0.33 0.43 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 1.74 5.23 -51.93 -0.27 1.47 16 39 H 0.07 1.07 6.11 -51.93 -0.32 0.76 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 47 H 0.04 0.83 7.44 -51.93 -0.39 0.45 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -31.51 354.54 -8.75 -40.26 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.45 Total: 0.52 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.06 Total: -2.49 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.63 Total: -47.62 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.51 -8.75 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354875985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.168 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds