Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.52994 * 109.47257 * 239.99539 * 2 1 3 5 5 H 1.08999 * 109.47163 * 63.96466 * 4 2 1 6 6 C 1.50699 * 109.47416 * 183.96381 * 4 2 1 7 7 O 1.21288 * 119.99423 * 76.19086 * 6 4 2 8 8 N 1.34771 * 120.00049 * 256.19040 * 6 4 2 9 9 C 1.46495 * 120.00087 * 354.61198 * 8 6 4 10 10 C 1.46503 * 119.99681 * 174.60536 * 8 6 4 11 11 C 1.50707 * 109.47133 * 90.00477 * 10 8 6 12 12 H 1.08004 * 119.99494 * 359.97438 * 11 10 8 13 13 C 1.37868 * 120.00190 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00093 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00114 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47277 * 59.99329 * 15 13 11 17 17 H 1.48494 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46852 * 299.99472 * 15 13 11 19 19 N 1.46905 * 109.47185 * 303.96810 * 4 2 1 20 20 C 1.46854 * 110.99546 * 299.20758 * 19 4 2 21 21 C 1.53036 * 109.52029 * 174.15977 * 20 19 4 22 22 C 1.53121 * 109.27949 * 59.17978 * 21 20 19 23 23 C 1.53118 * 109.16081 * 302.34484 * 22 21 20 24 24 C 1.46846 * 111.00192 * 175.00167 * 19 4 2 25 25 H 1.09004 * 109.46495 * 60.00123 * 1 2 3 26 26 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47120 * 300.00892 * 1 2 3 28 28 H 1.09005 * 109.47000 * 119.99725 * 2 1 3 29 29 H 1.09000 * 109.47673 * 54.81753 * 3 2 1 30 30 H 1.09001 * 109.47242 * 174.82356 * 3 2 1 31 31 H 1.09005 * 109.46975 * 294.81967 * 3 2 1 32 32 H 1.08998 * 109.47729 * 84.55254 * 9 8 6 33 33 H 1.09001 * 109.46800 * 204.55284 * 9 8 6 34 34 H 1.08999 * 109.47298 * 324.54725 * 9 8 6 35 35 H 1.09003 * 109.47106 * 210.00316 * 10 8 6 36 36 H 1.08999 * 109.47544 * 330.00272 * 10 8 6 37 37 H 0.96996 * 120.00032 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.46287 * 294.17388 * 20 19 4 39 39 H 1.09000 * 109.46117 * 54.14870 * 20 19 4 40 40 H 1.09003 * 109.50515 * 299.23813 * 21 20 19 41 41 H 1.08996 * 109.53503 * 179.13586 * 21 20 19 42 42 H 1.08997 * 109.52587 * 182.44137 * 22 21 20 43 43 H 1.09001 * 109.57567 * 62.28040 * 22 21 20 44 44 H 1.09002 * 109.50362 * 297.71461 * 23 22 21 45 45 H 1.09005 * 109.53845 * 177.60996 * 23 22 21 46 46 H 1.09004 * 109.45752 * 305.85263 * 24 19 4 47 47 H 1.08996 * 109.46737 * 65.82802 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.7359 -0.1682 -2.1377 6 6 3.5438 -0.8070 -1.2010 7 8 4.0822 -1.6141 -0.4732 8 7 4.2903 0.0133 -1.9667 9 6 3.6428 0.9053 -2.9316 10 6 5.7493 0.0128 -1.8340 11 6 6.3398 -0.9979 -2.7832 12 1 5.6929 -1.5818 -3.4212 13 6 7.7057 -1.1779 -2.8364 14 7 8.4934 -0.4672 -2.0591 15 14 8.4376 -2.4302 -4.0135 16 1 8.0680 -2.0747 -5.4071 17 1 9.9164 -2.4307 -3.8788 18 1 7.9102 -3.7804 -3.6905 19 7 1.4737 -2.0759 -1.2979 20 6 1.8788 -2.8583 -0.1230 21 6 1.1567 -4.2075 -0.1332 22 6 1.5111 -4.9609 -1.4183 23 6 1.1233 -4.1039 -2.6265 24 6 1.8464 -2.7576 -2.5440 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6030 1.9825 0.8399 30 1 3.1261 1.4439 0.0927 31 1 1.7545 1.9288 -0.9328 32 1 3.3301 1.8200 -2.4280 33 1 4.3458 1.1511 -3.7277 34 1 2.7710 0.4087 -3.3574 35 1 6.1361 1.0038 -2.0717 36 1 6.0211 -0.2474 -0.8110 37 1 9.4543 -0.5942 -2.0963 38 1 2.9560 -3.0227 -0.1500 39 1 1.6173 -2.3132 0.7840 40 1 0.0797 -4.0442 -0.0924 41 1 1.4688 -4.7945 0.7305 42 1 0.9651 -5.9037 -1.4502 43 1 2.5826 -5.1595 -1.4415 44 1 0.0458 -3.9389 -2.6249 45 1 1.4117 -4.6161 -3.5444 46 1 1.5614 -2.1395 -3.3954 47 1 2.9237 -2.9226 -2.5596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354875985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -60.403271 kcal Electronic energy + Delta-G solvation = -24625.739430 eV Core-core repulsion = 21421.286032 eV Total energy + Delta-G solvation = -3204.453397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75216 -39.08355 -36.76723 -36.62566 -34.72381 -33.37609 -31.70478 -30.22272 -28.12521 -27.83531 -27.14474 -25.06338 -24.20969 -23.67350 -21.32983 -20.78558 -19.70140 -18.74366 -18.08745 -17.49662 -16.96884 -16.42533 -16.23772 -15.68317 -15.33497 -15.03959 -14.92669 -14.61096 -14.38483 -14.18357 -13.99879 -13.61776 -13.54710 -13.47633 -13.31630 -13.05649 -12.99033 -12.82629 -12.78856 -12.59877 -12.32537 -12.11184 -11.89808 -11.87156 -11.76632 -11.69950 -11.58998 -11.23358 -11.03347 -10.90221 -10.69334 -9.44911 -9.05357 -8.26551 -6.41905 1.30376 1.34500 1.42011 1.78144 2.27316 2.43664 2.85906 3.01969 3.67225 3.74537 3.89391 3.99239 4.05121 4.08720 4.30904 4.31980 4.37413 4.47057 4.54394 4.56948 4.63306 4.74359 4.80617 4.86877 4.89470 4.90475 4.95113 4.99680 5.02407 5.06328 5.11633 5.13408 5.20254 5.25296 5.26248 5.28086 5.43284 5.48458 5.54724 5.62069 5.81740 5.98204 6.01533 6.07017 6.64856 6.77818 7.24326 7.48342 8.79701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.006337 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.810854 B = 4417.318640 C = 5539.847014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.147 4.147 4 C 0.075 3.925 5 H 0.120 0.880 6 C 0.474 3.526 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.076 3.924 10 C 0.263 3.737 11 C -0.539 4.539 12 H 0.047 0.953 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.281 1.281 19 N -0.490 5.490 20 C 0.030 3.970 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.104 4.104 24 C 0.044 3.956 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.022 0.978 36 H -0.008 1.008 37 H 0.268 0.732 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.087 0.913 47 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.235 -0.112 -0.603 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.096 4.096 3 C -0.204 4.204 4 C -0.037 4.037 5 H 0.137 0.863 6 C 0.262 3.738 7 O -0.469 6.469 8 N -0.338 5.338 9 C -0.066 4.066 10 C 0.141 3.859 11 C -0.578 4.578 12 H 0.065 0.935 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.788 3.212 16 H -0.183 1.183 17 H -0.200 1.200 18 H -0.207 1.207 19 N -0.213 5.213 20 C -0.098 4.098 21 C -0.145 4.145 22 C -0.161 4.161 23 C -0.141 4.141 24 C -0.084 4.084 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.049 0.951 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -20.279 -0.432 -0.201 20.285 hybrid contribution 2.481 -0.631 -0.333 2.581 sum -17.799 -1.062 -0.534 17.838 Atomic orbital electron populations 1.21611 0.91225 1.02811 1.02308 1.21042 0.98648 0.95441 0.94517 1.21894 0.99445 0.95337 1.03763 1.22227 0.85984 0.92865 1.02618 0.86278 1.22529 0.91912 0.79904 0.79430 1.90546 1.75446 1.37638 1.43265 1.48324 1.07628 1.39384 1.38453 1.21984 0.98330 0.93870 0.92404 1.18684 0.76254 0.95843 0.95091 1.21611 0.92183 1.21979 1.22038 0.93467 1.25835 0.97419 0.98099 0.97696 1.70037 1.04657 1.41985 1.40065 0.85526 0.77386 0.78717 0.79549 1.18319 1.20018 1.20680 1.62601 1.55264 1.00864 1.02528 1.22512 0.99273 0.94967 0.93002 1.21555 1.01200 0.94149 0.97579 1.21594 0.99868 0.99312 0.95316 1.21509 1.01411 0.93116 0.98108 1.22231 0.96162 0.97372 0.92627 0.91389 0.91788 0.91852 0.93053 0.90443 0.95753 0.90339 0.90591 0.91371 0.89779 0.95998 0.99027 0.92362 0.94328 0.91067 0.89769 0.91577 0.89709 0.95088 0.89140 0.90936 0.89494 0.98822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.99 71.98 0.65 -1.65 16 2 C -0.08 -2.00 2.02 -10.80 -0.02 -2.02 16 3 C -0.15 -3.50 8.50 71.98 0.61 -2.89 16 4 C 0.08 2.26 1.45 44.17 0.06 2.33 16 5 H 0.12 3.03 5.52 -2.39 -0.01 3.01 16 6 C 0.47 20.15 4.55 87.66 0.40 20.55 16 7 O -0.59 -31.04 13.10 -3.05 -0.04 -31.08 16 8 N -0.61 -26.35 2.86 -851.12 -2.43 -28.78 16 9 C 0.08 2.35 9.85 127.77 1.26 3.61 16 10 C 0.26 14.60 5.10 85.63 0.44 15.04 16 11 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.01 0.50 5.46 84.65 0.46 0.97 16 14 N -0.93 -57.30 13.29 21.44 0.28 -57.02 16 15 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 19 N -0.49 -14.26 3.71 -875.50 -3.25 -17.50 16 20 C 0.03 0.97 4.50 86.32 0.39 1.36 16 21 C -0.11 -2.69 6.09 30.65 0.19 -2.50 16 22 C -0.12 -3.07 6.00 30.67 0.18 -2.88 16 23 C -0.10 -2.44 6.09 30.65 0.19 -2.25 16 24 C 0.04 1.32 5.13 86.33 0.44 1.76 16 25 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.28 7.49 -2.39 -0.02 1.26 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.59 6.51 -2.38 -0.02 1.57 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.02 0.73 7.52 -2.39 -0.02 0.72 16 31 H 0.08 1.52 7.40 -2.38 -0.02 1.50 16 32 H 0.08 1.90 7.03 -2.39 -0.02 1.88 16 33 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 34 H 0.08 2.08 6.27 -2.39 -0.01 2.07 16 35 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 36 H -0.01 -0.54 7.50 -2.39 -0.02 -0.56 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.04 1.67 5.23 -2.39 -0.01 1.66 16 39 H 0.07 2.24 6.11 -2.39 -0.01 2.22 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 47 H -0.01 -0.27 7.44 -2.39 -0.02 -0.29 16 Total: -1.00 -74.34 354.54 3.00 -71.34 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.92 Total: 15.36 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.49 Total: -0.38 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -5.39 Total: -103.31 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -74.34 3.00 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354875985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.936 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds