Wall clock time and date at job start Tue Mar 31 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47290 * 120.00175 * 2 1 3 5 5 N 1.46497 * 109.47142 * 175.00011 * 4 2 1 6 6 C 1.34777 * 120.00128 * 89.99512 * 5 4 2 7 7 O 1.21272 * 119.99931 * 354.53278 * 6 5 4 8 8 C 1.50694 * 119.99774 * 174.52662 * 6 5 4 9 9 N 1.46502 * 109.47046 * 184.67099 * 8 6 5 10 10 C 1.36938 * 120.00251 * 270.00378 * 9 8 6 11 11 H 1.07993 * 120.00300 * 140.83865 * 10 9 8 12 12 C 1.38815 * 119.99733 * 320.83992 * 10 9 8 13 13 N 1.31625 * 119.99999 * 342.01330 * 12 10 9 14 14 Si 1.86796 * 120.00120 * 162.01365 * 12 10 9 15 15 H 1.48511 * 109.46952 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47173 * 119.99779 * 14 12 10 17 17 H 1.48495 * 109.47399 * 240.00245 * 14 12 10 18 18 C 1.46501 * 120.00043 * 90.00141 * 9 8 6 19 19 C 1.53002 * 117.50005 * 184.49181 * 18 9 8 20 20 C 1.52998 * 60.00196 * 252.51368 * 19 18 9 21 21 C 1.46499 * 119.99921 * 270.00071 * 5 4 2 22 22 C 1.53007 * 109.47207 * 298.45396 * 21 5 4 23 23 C 1.53000 * 109.47374 * 58.45144 * 21 5 4 24 24 H 1.09003 * 109.47004 * 299.99866 * 1 2 3 25 25 H 1.08995 * 109.47468 * 59.99806 * 1 2 3 26 26 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46724 * 239.99883 * 2 1 3 28 28 H 1.09003 * 109.46950 * 299.99769 * 3 2 1 29 29 H 1.09001 * 109.46931 * 60.00705 * 3 2 1 30 30 H 1.08997 * 109.46471 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46991 * 54.99998 * 4 2 1 32 32 H 1.09001 * 109.47096 * 294.99621 * 4 2 1 33 33 H 1.09006 * 109.47443 * 64.67413 * 8 6 5 34 34 H 1.09001 * 109.47917 * 304.67358 * 8 6 5 35 35 H 0.97001 * 119.99754 * 185.02734 * 13 12 10 36 36 H 1.08999 * 115.54945 * 330.20430 * 18 9 8 37 37 H 1.08998 * 117.49453 * 0.02562 * 19 18 9 38 38 H 1.09004 * 117.49480 * 145.01869 * 19 18 9 39 39 H 1.09004 * 117.49901 * 252.51291 * 20 19 18 40 40 H 1.08999 * 117.52191 * 107.48032 * 20 19 18 41 41 H 1.08999 * 109.47208 * 178.45195 * 21 5 4 42 42 H 1.08994 * 109.47071 * 64.93913 * 22 21 5 43 43 H 1.08995 * 109.47339 * 184.94535 * 22 21 5 44 44 H 1.09002 * 109.46853 * 304.94188 * 22 21 5 45 45 H 1.09001 * 109.47187 * 55.19524 * 23 21 5 46 46 H 1.08996 * 109.47374 * 175.19587 * 23 21 5 47 47 H 1.09000 * 109.47173 * 295.19907 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.2676 0.1492 1.7154 7 8 3.7534 1.1592 2.1470 8 6 5.7647 -0.0151 1.7662 9 7 6.3569 1.1212 2.4764 10 6 6.7329 2.2411 1.7838 11 1 6.5667 3.2199 2.2086 12 6 7.3277 2.1180 0.5356 13 7 7.8512 0.9681 0.1666 14 14 7.3852 3.5842 -0.6204 15 1 6.7331 4.7508 0.0271 16 1 8.7994 3.9163 -0.9287 17 1 6.6693 3.2513 -1.8781 18 6 6.5467 1.0595 3.9278 19 6 7.0717 2.3158 4.6257 20 6 7.9826 1.0985 4.4547 21 6 4.1258 -1.9919 0.5610 22 6 3.7238 -3.2585 1.3195 23 6 3.6598 -2.0983 -0.8924 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1299 1.4425 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7518 -0.1583 2.1369 33 1 6.1605 -0.0553 0.7513 34 1 6.0115 -0.9390 2.2892 35 1 8.3306 0.9010 -0.6740 36 1 5.8281 0.4452 4.4702 37 1 7.2754 3.1883 4.0050 38 1 6.6982 2.5283 5.6275 39 1 8.2085 0.5101 5.3441 40 1 8.7860 1.1697 3.7215 41 1 5.2099 -1.8811 0.5878 42 1 2.6501 -3.4169 1.2188 43 1 4.2577 -4.1142 0.9065 44 1 3.9772 -3.1464 2.3738 45 1 3.8698 -1.1628 -1.4107 46 1 4.1896 -2.9136 -1.3851 47 1 2.5878 -2.2944 -0.9168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355672253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:50 Heat of formation + Delta-G solvation = 5.078356 kcal Electronic energy + Delta-G solvation = -24465.697245 eV Core-core repulsion = 21264.083344 eV Total energy + Delta-G solvation = -3201.613901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.55735 -37.01426 -35.97772 -34.82014 -33.26850 -30.91218 -30.60875 -27.51036 -27.12641 -26.74276 -25.28901 -23.52866 -21.40722 -21.27578 -20.10426 -19.72100 -18.41012 -16.58175 -16.25492 -15.57695 -15.07575 -14.85858 -14.57224 -14.26074 -13.85310 -13.79545 -13.23836 -13.12125 -12.78194 -12.60465 -12.49328 -12.12338 -12.00288 -11.85314 -11.62657 -11.42360 -11.28780 -11.10712 -10.91100 -10.81298 -10.71245 -10.67616 -10.47184 -10.37460 -10.25301 -10.15600 -9.89863 -9.58580 -9.24917 -8.69296 -8.51845 -8.00590 -6.44558 -5.86107 -3.41250 3.33139 3.42312 3.48017 3.61482 3.71677 4.44190 4.98538 5.00814 5.08092 5.15199 5.25727 5.30007 5.33451 5.37152 5.46256 5.59365 5.70948 5.79187 5.82569 5.89388 5.94512 5.97721 5.99370 6.07870 6.13287 6.18742 6.21796 6.26969 6.30439 6.37586 6.38332 6.44683 6.53535 6.57171 6.66488 6.66957 6.93643 7.07634 7.22410 7.27382 7.30137 7.84884 8.15249 8.52089 9.05660 9.29241 9.74172 10.31435 11.16382 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.006665 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.642162 B = 4199.963654 C = 4711.811882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.622 5.622 6 C 0.484 3.516 7 O -0.524 6.524 8 C 0.132 3.868 9 N -0.529 5.529 10 C -0.239 4.239 11 H 0.064 0.936 12 C 0.011 3.989 13 N -0.896 5.896 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.289 1.289 17 H -0.287 1.287 18 C 0.127 3.873 19 C -0.193 4.193 20 C -0.219 4.219 21 C 0.131 3.869 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 -8.567 -0.192 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.193 4.193 4 C -0.001 4.001 5 N -0.359 5.359 6 C 0.272 3.728 7 O -0.398 6.398 8 C 0.001 3.999 9 N -0.244 5.244 10 C -0.369 4.369 11 H 0.081 0.919 12 C -0.188 4.188 13 N -0.540 5.540 14 Si 0.729 3.271 15 H -0.199 1.199 16 H -0.215 1.215 17 H -0.214 1.214 18 C 0.018 3.982 19 C -0.232 4.232 20 C -0.260 4.260 21 C 0.026 3.974 22 C -0.219 4.219 23 C -0.219 4.219 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.510 -8.029 -0.133 12.447 hybrid contribution 0.011 0.673 -0.752 1.009 sum -9.499 -7.357 -0.885 12.047 Atomic orbital electron populations 1.21780 0.95685 1.00965 1.01635 1.21692 0.94903 0.97908 0.99140 1.21785 1.02522 0.94645 1.00356 1.21311 0.81511 0.99260 0.97980 1.48455 1.05332 1.21846 1.60232 1.23251 0.92057 0.81852 0.75638 1.90580 1.75015 1.27730 1.46504 1.21030 0.85884 0.90154 1.02787 1.42866 1.65838 1.15721 0.99959 1.19050 1.32799 0.86014 0.99029 0.91873 1.25231 0.97043 0.96818 0.99751 1.69801 1.36501 1.24272 1.23417 0.86249 0.77283 0.82637 0.80906 1.19941 1.21547 1.21400 1.21086 0.92886 0.98569 0.85649 1.22995 1.05905 0.94248 1.00003 1.23358 0.98125 1.02195 1.02285 1.21088 0.99079 0.85327 0.91875 1.22167 1.01373 0.97399 1.00930 1.22248 1.01102 1.02259 0.96284 0.92804 0.92944 0.93203 0.90965 0.94483 0.92553 0.91658 0.91860 0.90868 0.85654 0.92803 0.93340 0.89850 0.88438 0.90862 0.91240 0.88882 0.88270 0.92791 0.91846 0.92285 0.92000 0.92014 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 2 C -0.12 -1.67 2.89 -90.62 -0.26 -1.93 16 3 C -0.14 -2.38 7.86 37.16 0.29 -2.09 16 4 C 0.12 1.82 4.40 -4.04 -0.02 1.80 16 5 N -0.62 -10.38 2.29 -166.11 -0.38 -10.76 16 6 C 0.48 10.28 6.49 -10.99 -0.07 10.21 16 7 O -0.52 -12.80 13.82 5.56 0.08 -12.72 16 8 C 0.13 2.99 4.13 -5.20 -0.02 2.97 16 9 N -0.53 -13.27 2.25 -167.02 -0.38 -13.64 16 10 C -0.24 -6.55 8.50 -15.06 -0.13 -6.68 16 11 H 0.06 1.80 6.67 -52.49 -0.35 1.45 16 12 C 0.01 0.29 5.03 -17.43 -0.09 0.20 16 13 N -0.90 -24.56 11.36 55.49 0.63 -23.93 16 14 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 C 0.13 2.85 6.57 -67.93 -0.45 2.40 16 19 C -0.19 -4.03 9.80 -26.73 -0.26 -4.29 16 20 C -0.22 -4.53 10.34 -26.73 -0.28 -4.81 16 21 C 0.13 1.83 3.14 -67.93 -0.21 1.61 16 22 C -0.16 -1.81 9.10 37.16 0.34 -1.47 16 23 C -0.16 -2.00 7.88 37.16 0.29 -1.71 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.01 5.32 -51.93 -0.28 0.73 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.04 7.92 -51.93 -0.41 0.63 16 30 H 0.06 1.39 5.95 -51.93 -0.31 1.08 16 31 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 32 H 0.07 1.22 7.50 -51.93 -0.39 0.83 16 33 H 0.13 3.12 5.10 -51.93 -0.27 2.86 16 34 H 0.05 1.13 7.76 -51.93 -0.40 0.72 16 35 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.10 2.21 6.44 -51.93 -0.33 1.87 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 41 H 0.10 1.54 5.81 -51.93 -0.30 1.24 16 42 H 0.05 0.56 6.92 -51.93 -0.36 0.20 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.63 6.75 -51.93 -0.35 0.28 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -29.54 360.44 -8.45 -37.99 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.29 Total: 5.87 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.52 Total: -5.09 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.12 Total: -48.34 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.54 -8.45 -37.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355672253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.072 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds