Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 N 1.46496 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.46510 * 119.99989 * 269.99686 * 6 5 4 8 8 C 1.50695 * 109.46741 * 89.99962 * 7 6 5 9 9 H 1.08003 * 120.00432 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99704 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00432 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46992 * 90.00177 * 12 10 8 14 14 H 1.48500 * 109.46966 * 210.00109 * 12 10 8 15 15 H 1.48505 * 109.46964 * 330.00145 * 12 10 8 16 16 C 1.34772 * 120.00375 * 90.00212 * 6 5 4 17 17 O 1.21281 * 119.99829 * 359.97438 * 16 6 5 18 18 C 1.50706 * 120.00259 * 180.02562 * 16 6 5 19 19 H 1.08999 * 110.32885 * 320.79048 * 18 16 6 20 20 C 1.54899 * 110.37746 * 83.16760 * 18 16 6 21 21 C 1.55134 * 101.65612 * 155.89827 * 20 18 16 22 22 C 1.54323 * 103.02037 * 324.35005 * 21 20 18 23 23 N 1.47443 * 107.23089 * 22.27908 * 22 21 20 24 24 C 1.46899 * 110.99679 * 123.25981 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 1.09001 * 109.47273 * 300.00152 * 5 4 2 35 35 H 1.08998 * 109.47609 * 60.00099 * 5 4 2 36 36 H 1.08994 * 109.46764 * 210.00317 * 7 6 5 37 37 H 1.09001 * 109.46588 * 330.00370 * 7 6 5 38 38 H 0.96998 * 120.00651 * 180.02562 * 11 10 8 39 39 H 1.08998 * 110.99212 * 273.99434 * 20 18 16 40 40 H 1.09008 * 110.98877 * 37.80816 * 20 18 16 41 41 H 1.08998 * 110.71022 * 205.96553 * 21 20 18 42 42 H 1.09004 * 110.85564 * 82.79579 * 21 20 18 43 43 H 1.08996 * 109.88735 * 262.87800 * 22 21 20 44 44 H 1.08997 * 109.88873 * 141.68710 * 22 21 20 45 45 H 1.08998 * 109.47261 * 299.15458 * 24 23 22 46 46 H 1.09004 * 109.47210 * 59.15868 * 24 23 22 47 47 H 1.09009 * 109.47066 * 179.15376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 7 2.1241 -2.8860 -2.3840 7 6 1.2846 -2.9588 -3.5825 8 6 1.5630 -1.7685 -4.4637 9 1 2.2926 -1.0317 -4.1616 10 6 0.8870 -1.6205 -5.6563 11 7 -0.0010 -2.5179 -6.0245 12 14 1.2326 -0.1454 -6.7491 13 1 2.3269 -0.4769 -7.6966 14 1 0.0069 0.2040 -7.5111 15 1 1.6387 1.0093 -5.9081 16 6 3.3460 -3.4546 -2.3817 17 8 4.0411 -3.3940 -1.3898 18 6 3.8491 -4.1646 -3.6122 19 1 3.0415 -4.7253 -4.0827 20 6 4.4563 -3.1482 -4.6110 21 6 5.4268 -4.0469 -5.4217 22 6 5.9539 -5.0353 -4.3602 23 7 4.9676 -5.0668 -3.2647 24 6 4.4868 -6.4346 -3.0284 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1371 33 1 3.1263 -0.6443 -1.2952 34 1 2.0699 -2.6549 -0.3004 35 1 0.5490 -2.2724 -1.1422 36 1 1.5090 -3.8753 -4.1281 37 1 0.2343 -2.9573 -3.2909 38 1 -0.4763 -2.4141 -6.8637 39 1 3.6854 -2.7255 -5.2552 40 1 4.9989 -2.3616 -4.0863 41 1 6.2431 -3.4560 -5.8372 42 1 4.8956 -4.5774 -6.2120 43 1 6.9175 -4.6940 -3.9819 44 1 6.0553 -6.0289 -4.7966 45 1 4.0020 -6.8100 -3.9296 46 1 5.3298 -7.0773 -2.7747 47 1 3.7718 -6.4314 -2.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356982183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -48.615956 kcal Electronic energy + Delta-G solvation = -24107.466790 eV Core-core repulsion = 20903.524529 eV Total energy + Delta-G solvation = -3203.942261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63639 -37.70404 -36.20209 -34.60676 -32.52389 -31.66042 -29.90046 -28.19652 -27.00826 -26.83644 -25.30709 -23.35430 -22.92519 -21.08388 -20.55336 -19.56702 -17.99033 -16.67981 -16.54020 -15.67486 -15.07955 -14.83187 -14.73522 -14.44701 -13.91699 -13.68649 -13.37761 -13.18313 -12.96913 -12.50962 -12.39316 -12.31471 -12.09204 -11.93793 -11.66337 -11.53716 -11.45948 -11.17253 -11.03006 -10.90722 -10.87007 -10.72939 -10.58296 -10.53238 -10.36083 -10.28455 -10.17523 -9.81620 -9.61588 -8.86981 -8.56987 -7.86080 -7.60828 -6.19188 -4.24630 3.19678 3.28139 3.31007 3.53194 3.81480 4.30503 4.59403 5.00775 5.11576 5.14251 5.22493 5.26686 5.30233 5.32225 5.56484 5.62195 5.68431 5.74207 5.82936 5.86049 5.89181 5.99185 6.04875 6.06547 6.10408 6.14603 6.16380 6.18785 6.23566 6.31907 6.37392 6.48637 6.54560 6.64761 6.77707 6.78707 6.84427 7.00501 7.15224 7.27202 7.38586 7.64974 7.77264 8.06898 8.43662 8.82227 9.19615 9.42037 10.87206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.007730 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.993561 B = 3621.422676 C = 5324.176094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.126 3.874 6 N -0.600 5.600 7 C 0.237 3.763 8 C -0.527 4.527 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.889 3.111 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.526 3.474 17 O -0.554 6.554 18 C 0.063 3.937 19 H 0.079 0.921 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.046 3.954 23 N -0.517 5.517 24 C 0.025 3.975 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -1.077 4.414 6.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.166 4.166 5 C 0.003 3.997 6 N -0.331 5.331 7 C 0.117 3.883 8 C -0.565 4.565 9 H 0.082 0.918 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.716 3.284 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.197 1.197 16 C 0.313 3.687 17 O -0.432 6.432 18 C -0.048 4.048 19 H 0.096 0.904 20 C -0.150 4.150 21 C -0.181 4.181 22 C -0.082 4.082 23 N -0.241 5.241 24 C -0.124 4.124 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.754 -0.949 5.251 7.147 hybrid contribution -0.422 0.502 -1.575 1.706 sum 4.332 -0.447 3.677 5.699 Atomic orbital electron populations 1.21881 0.95487 1.01805 1.01249 1.21065 0.95682 0.95921 0.98653 1.21810 1.00776 0.96343 1.01210 1.22005 1.01014 0.95683 0.97855 1.21279 0.98454 0.91949 0.88050 1.48233 1.16530 1.53113 1.15260 1.19438 0.90192 0.97583 0.81082 1.21490 1.23036 1.08189 1.03834 0.91796 1.24921 0.94867 0.96300 0.97681 1.69915 1.25345 1.34718 1.22988 0.86632 0.77857 0.83163 0.80709 1.20476 1.21179 1.19720 1.20133 0.81028 0.79025 0.88524 1.90572 1.56351 1.61333 1.34973 1.22451 0.93484 0.94811 0.94010 0.90369 1.22706 0.99017 0.96542 0.96730 1.22810 0.99486 0.97957 0.97887 1.22800 0.96504 0.98474 0.90395 1.63107 1.12432 1.07517 1.41073 1.22494 1.00135 0.89565 1.00165 0.93504 0.92498 0.92441 0.91753 0.93312 0.92985 0.92704 0.90301 0.92336 0.91673 0.91264 0.94751 0.94864 0.92609 0.87247 0.91210 0.90954 0.91421 0.90804 0.93080 0.95693 0.91644 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.95 37.16 0.33 -1.65 16 2 C -0.09 -1.37 2.92 -90.62 -0.26 -1.63 16 3 C -0.14 -1.91 9.19 37.16 0.34 -1.56 16 4 C -0.13 -2.26 5.01 -26.73 -0.13 -2.40 16 5 C 0.13 2.37 5.21 -4.04 -0.02 2.35 16 6 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 7 C 0.24 5.46 4.99 -5.19 -0.03 5.43 16 8 C -0.53 -12.85 6.80 -34.44 -0.23 -13.08 16 9 H 0.06 1.60 7.42 -52.48 -0.39 1.21 16 10 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -23.68 13.29 55.43 0.74 -22.94 16 12 Si 0.89 19.89 29.54 -169.99 -5.02 14.86 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.53 11.39 6.96 -10.98 -0.08 11.32 16 17 O -0.55 -13.23 16.17 5.56 0.09 -13.14 16 18 C 0.06 1.23 2.03 -67.34 -0.14 1.09 16 19 H 0.08 1.57 5.95 -51.93 -0.31 1.26 16 20 C -0.11 -2.07 6.08 -24.60 -0.15 -2.22 16 21 C -0.14 -2.15 6.94 -24.91 -0.17 -2.33 16 22 C 0.05 0.68 6.90 -2.83 -0.02 0.66 16 23 N -0.52 -9.16 4.69 -232.97 -1.09 -10.25 16 24 C 0.03 0.38 9.12 60.06 0.55 0.93 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.55 7.26 -51.93 -0.38 1.18 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.07 1.23 6.32 -51.93 -0.33 0.90 16 36 H 0.03 0.83 5.95 -51.93 -0.31 0.52 16 37 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 38 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.11 2.25 6.30 -51.93 -0.33 1.92 16 40 H 0.07 1.35 8.05 -51.92 -0.42 0.93 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.66 7.58 -51.93 -0.39 0.26 16 45 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -27.82 364.84 -8.95 -36.76 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.62 Total: 3.86 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.11 Total: -1.54 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.79 Total: -46.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.82 -8.95 -36.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.854 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds