Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 N 1.46496 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.46510 * 119.99989 * 269.99686 * 6 5 4 8 8 C 1.50695 * 109.46741 * 89.99962 * 7 6 5 9 9 H 1.08003 * 120.00432 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99704 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00432 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46992 * 90.00177 * 12 10 8 14 14 H 1.48500 * 109.46966 * 210.00109 * 12 10 8 15 15 H 1.48505 * 109.46964 * 330.00145 * 12 10 8 16 16 C 1.34772 * 120.00375 * 90.00212 * 6 5 4 17 17 O 1.21281 * 119.99829 * 359.97438 * 16 6 5 18 18 C 1.50706 * 120.00259 * 180.02562 * 16 6 5 19 19 H 1.08999 * 110.32885 * 320.79048 * 18 16 6 20 20 C 1.54899 * 110.37746 * 83.16760 * 18 16 6 21 21 C 1.55134 * 101.65612 * 155.89827 * 20 18 16 22 22 C 1.54323 * 103.02037 * 324.35005 * 21 20 18 23 23 N 1.47443 * 107.23089 * 22.27908 * 22 21 20 24 24 C 1.46899 * 110.99679 * 123.25981 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 1.09001 * 109.47273 * 300.00152 * 5 4 2 35 35 H 1.08998 * 109.47609 * 60.00099 * 5 4 2 36 36 H 1.08994 * 109.46764 * 210.00317 * 7 6 5 37 37 H 1.09001 * 109.46588 * 330.00370 * 7 6 5 38 38 H 0.96998 * 120.00651 * 180.02562 * 11 10 8 39 39 H 1.08998 * 110.99212 * 273.99434 * 20 18 16 40 40 H 1.09008 * 110.98877 * 37.80816 * 20 18 16 41 41 H 1.08998 * 110.71022 * 205.96553 * 21 20 18 42 42 H 1.09004 * 110.85564 * 82.79579 * 21 20 18 43 43 H 1.08996 * 109.88735 * 262.87800 * 22 21 20 44 44 H 1.08997 * 109.88873 * 141.68710 * 22 21 20 45 45 H 1.08998 * 109.47261 * 299.15458 * 24 23 22 46 46 H 1.09004 * 109.47210 * 59.15868 * 24 23 22 47 47 H 1.09009 * 109.47066 * 179.15376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 7 2.1241 -2.8860 -2.3840 7 6 1.2846 -2.9588 -3.5825 8 6 1.5630 -1.7685 -4.4637 9 1 2.2926 -1.0317 -4.1616 10 6 0.8870 -1.6205 -5.6563 11 7 -0.0010 -2.5179 -6.0245 12 14 1.2326 -0.1454 -6.7491 13 1 2.3269 -0.4769 -7.6966 14 1 0.0069 0.2040 -7.5111 15 1 1.6387 1.0093 -5.9081 16 6 3.3460 -3.4546 -2.3817 17 8 4.0411 -3.3940 -1.3898 18 6 3.8491 -4.1646 -3.6122 19 1 3.0415 -4.7253 -4.0827 20 6 4.4563 -3.1482 -4.6110 21 6 5.4268 -4.0469 -5.4217 22 6 5.9539 -5.0353 -4.3602 23 7 4.9676 -5.0668 -3.2647 24 6 4.4868 -6.4346 -3.0284 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1371 33 1 3.1263 -0.6443 -1.2952 34 1 2.0699 -2.6549 -0.3004 35 1 0.5490 -2.2724 -1.1422 36 1 1.5090 -3.8753 -4.1281 37 1 0.2343 -2.9573 -3.2909 38 1 -0.4763 -2.4141 -6.8637 39 1 3.6854 -2.7255 -5.2552 40 1 4.9989 -2.3616 -4.0863 41 1 6.2431 -3.4560 -5.8372 42 1 4.8956 -4.5774 -6.2120 43 1 6.9175 -4.6940 -3.9819 44 1 6.0553 -6.0289 -4.7966 45 1 4.0020 -6.8100 -3.9296 46 1 5.3298 -7.0773 -2.7747 47 1 3.7718 -6.4314 -2.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356982183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -63.743870 kcal Electronic energy + Delta-G solvation = -24108.122786 eV Core-core repulsion = 20903.524529 eV Total energy + Delta-G solvation = -3204.598257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23743 -39.15474 -37.63832 -36.31556 -34.42581 -32.98088 -31.36322 -29.72885 -28.75309 -27.98383 -26.57963 -24.88476 -24.76874 -22.56191 -21.83146 -20.85424 -19.66168 -18.47251 -18.30469 -17.28168 -16.52756 -16.36941 -16.20305 -16.06514 -15.35874 -15.03314 -14.73042 -14.52068 -14.25206 -14.24478 -14.09112 -13.65828 -13.50415 -13.31575 -13.12711 -13.07286 -12.89728 -12.68987 -12.65680 -12.41967 -12.28501 -12.18541 -12.04775 -11.96994 -11.73410 -11.64037 -11.57832 -11.43009 -11.32382 -10.65267 -10.45232 -9.39556 -9.22669 -8.15890 -6.26407 1.40725 1.44523 1.52215 1.80946 2.23004 2.44193 3.12943 3.17668 3.64165 3.78796 3.93759 3.98940 4.04562 4.10425 4.12708 4.23430 4.38212 4.44640 4.50701 4.62070 4.63652 4.68234 4.78849 4.79864 4.84803 4.90410 4.92832 4.95368 4.97008 5.03961 5.06183 5.14287 5.19840 5.23705 5.26618 5.32402 5.35693 5.48911 5.57691 5.70906 5.82841 5.98783 6.10995 6.14587 6.62272 6.87662 7.38259 7.50091 8.89945 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.007730 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.993561 B = 3621.422676 C = 5324.176094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.122 3.878 6 N -0.602 5.602 7 C 0.253 3.747 8 C -0.521 4.521 9 H 0.055 0.945 10 C 0.027 3.973 11 N -0.920 5.920 12 Si 0.943 3.057 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.521 3.479 17 O -0.579 6.579 18 C 0.067 3.933 19 H 0.068 0.932 20 C -0.111 4.111 21 C -0.133 4.133 22 C 0.047 3.953 23 N -0.537 5.537 24 C 0.025 3.975 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.018 0.982 38 H 0.265 0.735 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.090 0.910 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -0.898 4.349 6.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.154 4.154 5 C 0.000 4.000 6 N -0.333 5.333 7 C 0.132 3.868 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.174 4.174 11 N -0.559 5.559 12 Si 0.769 3.231 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.309 3.691 17 O -0.460 6.460 18 C -0.044 4.044 19 H 0.086 0.914 20 C -0.150 4.150 21 C -0.172 4.172 22 C -0.080 4.080 23 N -0.262 5.262 24 C -0.123 4.123 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.109 0.891 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.550 -0.770 5.188 7.636 hybrid contribution -0.664 0.419 -1.496 1.690 sum 4.886 -0.351 3.691 6.133 Atomic orbital electron populations 1.21851 0.94403 1.01879 1.01968 1.21054 0.96546 0.96473 0.96890 1.21788 1.00595 0.95396 1.02099 1.21861 0.99437 0.95193 0.98868 1.21438 0.99059 0.92391 0.87127 1.48280 1.16411 1.53225 1.15357 1.19120 0.89440 0.96770 0.81431 1.21507 1.22396 1.08061 1.03973 0.92719 1.25503 0.94738 0.98362 0.98756 1.70000 1.26275 1.36172 1.23494 0.85784 0.77739 0.80408 0.79206 1.19733 1.21099 1.19746 1.20606 0.80755 0.78759 0.88994 1.90542 1.56904 1.62461 1.36050 1.22335 0.93985 0.95216 0.92854 0.91408 1.22592 0.99113 0.96676 0.96575 1.22795 0.99194 0.97506 0.97669 1.22891 0.95791 0.99842 0.89513 1.63086 1.12123 1.08455 1.42564 1.22537 1.00920 0.88733 1.00087 0.91052 0.92781 0.93426 0.90971 0.90920 0.93316 0.93296 0.92498 0.94459 0.91675 0.90219 0.95756 0.96360 0.92539 0.89573 0.92525 0.88773 0.90752 0.90033 0.90465 0.94670 0.89146 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.95 71.98 0.64 -3.03 16 2 C -0.09 -2.55 2.92 -10.79 -0.03 -2.59 16 3 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 4 C -0.11 -4.17 5.01 30.60 0.15 -4.02 16 5 C 0.12 4.69 5.21 86.38 0.45 5.14 16 6 N -0.60 -26.15 2.46 -826.16 -2.03 -28.18 16 7 C 0.25 11.98 4.99 85.63 0.43 12.41 16 8 C -0.52 -25.88 6.80 25.60 0.17 -25.71 16 9 H 0.05 2.80 7.42 -2.91 -0.02 2.77 16 10 C 0.03 1.35 5.46 84.65 0.46 1.81 16 11 N -0.92 -49.24 13.29 21.45 0.28 -48.96 16 12 Si 0.94 40.77 29.54 68.60 2.03 42.79 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 14 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 C 0.52 23.06 6.96 87.66 0.61 23.67 16 17 O -0.58 -28.13 16.17 -3.03 -0.05 -28.18 16 18 C 0.07 2.64 2.03 44.64 0.09 2.73 16 19 H 0.07 2.78 5.95 -2.39 -0.01 2.76 16 20 C -0.11 -4.13 6.08 31.97 0.19 -3.94 16 21 C -0.13 -3.77 6.94 31.77 0.22 -3.55 16 22 C 0.05 1.27 6.90 86.65 0.60 1.87 16 23 N -0.54 -18.48 4.69 -891.00 -4.18 -22.66 16 24 C 0.03 0.73 9.12 127.69 1.17 1.90 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.40 6.56 -2.39 -0.02 1.38 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 2.30 7.26 -2.39 -0.02 2.28 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 2.50 7.42 -2.39 -0.02 2.48 16 35 H 0.08 2.86 6.32 -2.39 -0.02 2.84 16 36 H 0.02 1.21 5.95 -2.39 -0.01 1.20 16 37 H 0.02 0.92 7.89 -2.39 -0.02 0.90 16 38 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 39 H 0.09 3.60 6.30 -2.39 -0.02 3.58 16 40 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 1.71 7.58 -2.39 -0.02 1.70 16 45 H 0.03 0.94 8.09 -2.39 -0.02 0.92 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -59.58 364.84 2.78 -56.80 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.91 Total: 24.58 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.82 Total: 3.80 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -5.92 Total: -99.80 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -59.58 2.78 -56.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.945 kcal (2) G-P(sol) polarization free energy of solvation -59.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds