Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47440 * 111.00039 * 2 1 4 4 C 1.54319 * 107.22970 * 123.25570 * 3 2 1 5 5 C 1.55263 * 103.08555 * 22.20792 * 4 3 2 6 6 C 1.47841 * 110.99877 * 120.84730 * 2 1 3 7 7 H 1.08996 * 110.37681 * 332.57446 * 6 2 1 8 8 C 1.50701 * 110.37317 * 94.80493 * 6 2 1 9 9 O 1.21279 * 120.00202 * 17.20511 * 8 6 2 10 10 N 1.34777 * 120.00030 * 197.19655 * 8 6 2 11 11 C 1.46499 * 120.00368 * 185.10995 * 10 8 6 12 12 C 1.50694 * 109.47046 * 84.17879 * 11 10 8 13 13 H 1.07993 * 120.00168 * 355.96015 * 12 11 10 14 14 C 1.37879 * 119.99766 * 176.22649 * 12 11 10 15 15 N 1.31519 * 120.00071 * 179.72727 * 14 12 11 16 16 Si 1.86803 * 120.00074 * 359.73512 * 14 12 11 17 17 H 1.48492 * 109.47208 * 89.99561 * 16 14 12 18 18 H 1.48502 * 109.46827 * 209.99512 * 16 14 12 19 19 H 1.48498 * 109.46988 * 329.99103 * 16 14 12 20 20 C 1.46497 * 119.99908 * 5.11580 * 10 8 6 21 21 C 1.52994 * 109.47634 * 94.79288 * 20 10 8 22 22 C 1.53000 * 109.46988 * 65.73191 * 21 20 10 23 23 C 1.52997 * 109.47560 * 185.73182 * 21 20 10 24 24 C 1.52999 * 109.47430 * 305.73284 * 21 20 10 25 25 H 1.08997 * 109.47485 * 299.15650 * 1 2 3 26 26 H 1.09008 * 109.47084 * 59.15427 * 1 2 3 27 27 H 1.09004 * 109.47514 * 179.15214 * 1 2 3 28 28 H 1.08995 * 109.89400 * 242.66470 * 3 2 1 29 29 H 1.08998 * 109.88887 * 3.85682 * 3 2 1 30 30 H 1.09006 * 110.70079 * 140.66900 * 4 3 2 31 31 H 1.08996 * 110.70720 * 263.72924 * 4 3 2 32 32 H 1.08998 * 111.08597 * 206.37772 * 5 4 3 33 33 H 1.09006 * 110.94258 * 82.52706 * 5 4 3 34 34 H 1.09006 * 109.46922 * 324.18427 * 11 10 8 35 35 H 1.09003 * 109.47387 * 204.18841 * 11 10 8 36 36 H 0.96998 * 119.99839 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47240 * 214.79948 * 20 10 8 38 38 H 1.09009 * 109.47227 * 334.79224 * 20 10 8 39 39 H 1.09002 * 109.47011 * 52.38908 * 22 21 20 40 40 H 1.09002 * 109.47269 * 172.38792 * 22 21 20 41 41 H 1.08996 * 109.47398 * 292.38719 * 22 21 20 42 42 H 1.09005 * 109.46973 * 59.99806 * 23 21 20 43 43 H 1.09004 * 109.47656 * 179.97438 * 23 21 20 44 44 H 1.09004 * 109.47358 * 300.00030 * 23 21 20 45 45 H 1.09003 * 109.46949 * 65.22793 * 24 21 20 46 46 H 1.08999 * 109.47376 * 185.22794 * 24 21 20 47 47 H 1.09004 * 109.47137 * 305.23196 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5135 1.2326 5 6 3.3043 0.0435 1.5467 6 6 1.9988 -0.7077 1.1850 7 1 1.2881 -0.6520 2.0095 8 6 2.2973 -2.1457 0.8472 9 8 2.3967 -2.4884 -0.3119 10 7 2.4539 -3.0510 1.8333 11 6 2.8540 -4.4231 1.5114 12 6 4.3539 -4.4919 1.3827 13 1 4.9445 -3.5912 1.4616 14 6 4.9717 -5.7040 1.1588 15 7 6.2803 -5.7633 1.0412 16 14 3.9501 -7.2619 1.0223 17 1 3.5642 -7.4782 -0.3952 18 1 4.7472 -8.4200 1.5005 19 1 2.7269 -7.1261 1.8533 20 6 2.2240 -2.6631 3.2272 21 6 0.7888 -3.0140 3.6242 22 6 0.6127 -4.5338 3.6094 23 6 0.5036 -2.4813 5.0298 24 6 -0.1854 -2.3781 2.6305 25 1 -0.3634 0.5006 0.8974 26 1 -0.3634 0.5270 -0.8824 27 1 -0.3634 -1.0276 -0.0152 28 1 2.5697 1.5541 -0.9105 29 1 1.1756 2.0891 0.0689 30 1 3.8000 2.1033 0.9906 31 1 2.3752 1.9573 2.0685 32 1 3.5470 -0.0810 2.6020 33 1 4.1309 -0.2843 0.9162 34 1 2.3944 -4.7241 0.5699 35 1 2.5263 -5.0931 2.3063 36 1 6.7148 -6.6160 0.8832 37 1 2.9207 -3.1977 3.8728 38 1 2.3789 -1.5895 3.3358 39 1 1.3939 -4.9959 4.2129 40 1 -0.3637 -4.7905 4.0205 41 1 0.6823 -4.8977 2.5844 42 1 0.6291 -1.3985 5.0404 43 1 -0.5191 -2.7309 5.3126 44 1 1.1976 -2.9344 5.7379 45 1 -0.0445 -2.8256 1.6466 46 1 -1.2087 -2.5495 2.9645 47 1 0.0031 -1.3060 2.5724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356982187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -27.478769 kcal Electronic energy + Delta-G solvation = -24745.328778 eV Core-core repulsion = 21542.303094 eV Total energy + Delta-G solvation = -3203.025684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14713 -38.07964 -36.77077 -33.84114 -32.38183 -31.93544 -29.96409 -27.90129 -27.22348 -27.01867 -25.70132 -25.39630 -22.92577 -21.23168 -20.74523 -19.28647 -17.84119 -16.97099 -16.91451 -15.85626 -15.18387 -15.09993 -14.77763 -14.19273 -14.02793 -13.82599 -13.54859 -13.50342 -13.15466 -12.70183 -12.58672 -12.43648 -12.34740 -12.09730 -11.90963 -11.64541 -11.47882 -11.39733 -11.33969 -11.26139 -11.04799 -10.93036 -10.78077 -10.62540 -10.53577 -10.42031 -10.27196 -9.98992 -9.45244 -8.86297 -8.53237 -8.04760 -7.54642 -6.03335 -4.00596 3.31265 3.36830 3.39010 3.45516 3.66865 4.30534 4.43516 4.64516 4.78271 4.88092 4.95651 4.97156 5.06076 5.20558 5.28230 5.36748 5.39680 5.41491 5.52897 5.58336 5.63084 5.69085 5.72304 5.81039 5.82852 5.88102 5.91636 5.98185 6.01534 6.08238 6.11532 6.15997 6.22437 6.31578 6.34185 6.48593 6.56124 6.76966 6.97364 7.09339 7.14990 7.48986 7.68662 8.41023 8.54434 9.00952 9.19134 9.57840 11.10359 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.006809 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.722653 B = 4111.058750 C = 5038.057031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.511 5.511 3 C 0.045 3.955 4 C -0.140 4.140 5 C -0.117 4.117 6 C 0.044 3.956 7 H 0.081 0.919 8 C 0.521 3.479 9 O -0.517 6.517 10 N -0.593 5.593 11 C 0.215 3.785 12 C -0.523 4.523 13 H 0.073 0.927 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.872 3.128 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.119 3.881 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.145 4.145 25 H 0.022 0.978 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.038 0.962 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 12.393 7.173 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.235 5.235 3 C -0.083 4.083 4 C -0.179 4.179 5 C -0.156 4.156 6 C -0.067 4.067 7 H 0.098 0.902 8 C 0.306 3.694 9 O -0.391 6.391 10 N -0.325 5.325 11 C 0.094 3.906 12 C -0.562 4.562 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.700 3.300 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.005 4.005 21 C -0.090 4.090 22 C -0.200 4.200 23 C -0.195 4.195 24 C -0.202 4.202 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.724 11.799 6.027 18.370 hybrid contribution -0.629 -0.506 0.683 1.057 sum -13.352 11.294 6.710 18.731 Atomic orbital electron populations 1.22539 0.87634 1.02260 0.99973 1.63051 1.07500 1.13204 1.39725 1.22838 0.97753 0.88970 0.98738 1.22806 1.00079 0.97047 0.97943 1.22681 0.96970 0.93728 1.02194 1.22885 0.97650 0.93828 0.92344 0.90192 1.19950 0.77699 0.86068 0.85642 1.90657 1.49212 1.79870 1.19349 1.47811 1.67344 1.12350 1.04998 1.19736 0.96290 0.78111 0.96456 1.21373 0.90043 0.95506 1.49237 0.90845 1.24848 0.94780 0.98729 0.94698 1.69900 1.08374 1.25813 1.49734 0.86906 0.80621 0.83376 0.79138 1.20007 1.21155 1.18972 1.21592 0.94727 0.99922 0.84302 1.21020 0.96205 0.96575 0.95192 1.21989 1.00850 0.94356 1.02804 1.21807 1.01409 1.00508 0.95739 1.22090 0.98445 0.99899 0.99763 0.95917 0.91357 0.91333 0.90311 0.92812 0.90427 0.91560 0.90181 0.89640 0.95250 0.94394 0.92689 0.90052 0.91407 0.92294 0.93386 0.91745 0.92916 0.92725 0.92360 0.92146 0.92953 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.06 60.07 0.54 0.86 16 2 N -0.51 -7.91 4.68 -232.98 -1.09 -9.00 16 3 C 0.04 0.55 6.90 -2.84 -0.02 0.53 16 4 C -0.14 -1.56 6.94 -24.84 -0.17 -1.74 16 5 C -0.12 -1.70 6.24 -24.53 -0.15 -1.85 16 6 C 0.04 0.70 1.59 -67.34 -0.11 0.60 16 7 H 0.08 1.11 3.46 -51.93 -0.18 0.93 16 8 C 0.52 10.93 5.47 -10.98 -0.06 10.87 16 9 O -0.52 -13.43 16.22 5.56 0.09 -13.34 16 10 N -0.59 -12.09 1.97 -175.06 -0.34 -12.43 16 11 C 0.21 5.23 3.23 -5.20 -0.02 5.21 16 12 C -0.52 -15.12 9.89 -34.44 -0.34 -15.46 16 13 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 16 Si 0.87 21.73 27.55 -169.99 -4.68 17.05 16 17 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.14 6.43 56.52 0.36 -5.77 16 20 C 0.12 1.87 4.45 -4.05 -0.02 1.86 16 21 C -0.09 -1.16 0.85 -154.51 -0.13 -1.30 16 22 C -0.14 -2.05 7.10 37.16 0.26 -1.79 16 23 C -0.14 -1.41 8.47 37.16 0.31 -1.09 16 24 C -0.15 -1.85 7.17 37.16 0.27 -1.59 16 25 H 0.02 0.24 8.09 -51.93 -0.42 -0.18 16 26 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.54 7.58 -51.93 -0.39 0.15 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.03 7.17 -51.93 -0.37 0.65 16 33 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 34 H 0.03 0.78 7.16 -51.93 -0.37 0.41 16 35 H 0.04 0.88 4.49 -51.93 -0.23 0.64 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.07 0.93 5.07 -51.92 -0.26 0.66 16 39 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 40 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 41 H 0.06 1.08 6.27 -51.93 -0.33 0.75 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.94 6.90 -51.93 -0.36 0.58 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.63 5.39 -51.93 -0.28 0.35 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -34.19 351.36 -7.96 -42.15 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.27 Total: 0.41 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 0.27 Total: -2.89 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.66 Total: -48.67 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.68 Total: 17.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.19 -7.96 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.670 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds