Wall clock time and date at job start Tue Mar 31 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48528 * 111.00167 * 2 1 4 4 C 1.55095 * 103.28537 * 200.33253 * 3 2 1 5 5 C 1.54592 * 102.84397 * 37.30764 * 4 3 2 6 6 C 1.47899 * 111.00013 * 242.60105 * 2 1 3 7 7 H 1.09009 * 109.91791 * 26.49337 * 6 2 1 8 8 C 1.50695 * 109.92048 * 265.19885 * 6 2 1 9 9 O 1.21279 * 120.00174 * 337.63350 * 8 6 2 10 10 N 1.34773 * 120.00398 * 157.62842 * 8 6 2 11 11 C 1.46509 * 119.99645 * 5.15601 * 10 8 6 12 12 C 1.50702 * 109.47033 * 90.00255 * 11 10 8 13 13 H 1.08000 * 120.00024 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99891 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00286 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99676 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47397 * 59.99659 * 16 14 12 18 18 H 1.48507 * 109.47126 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47143 * 299.98966 * 16 14 12 20 20 C 1.46502 * 120.00688 * 185.15678 * 10 8 6 21 21 C 1.52993 * 109.47045 * 89.28124 * 20 10 8 22 22 C 1.52997 * 109.47347 * 54.76361 * 21 20 10 23 23 C 1.53006 * 109.47148 * 174.76504 * 21 20 10 24 24 C 1.53008 * 109.47187 * 294.76450 * 21 20 10 25 25 H 1.08997 * 109.47427 * 177.39639 * 1 2 3 26 26 H 1.09001 * 109.46821 * 297.39814 * 1 2 3 27 27 H 1.09002 * 109.47227 * 57.39562 * 1 2 3 28 28 H 1.09003 * 110.66874 * 318.71579 * 3 2 1 29 29 H 1.09002 * 110.66699 * 81.67223 * 3 2 1 30 30 H 1.08998 * 110.70971 * 278.99527 * 4 3 2 31 31 H 1.09005 * 110.81380 * 155.66241 * 4 3 2 32 32 H 1.09006 * 110.30750 * 219.18395 * 5 4 3 33 33 H 1.08999 * 110.31319 * 97.12384 * 5 4 3 34 34 H 1.09001 * 109.47059 * 209.99804 * 11 10 8 35 35 H 1.08990 * 109.47451 * 329.99952 * 11 10 8 36 36 H 0.97000 * 120.00171 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47387 * 209.28465 * 20 10 8 38 38 H 1.09003 * 109.46261 * 329.28542 * 20 10 8 39 39 H 1.09001 * 109.47081 * 60.00175 * 22 21 20 40 40 H 1.08999 * 109.47466 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47514 * 300.00284 * 22 21 20 42 42 H 1.09009 * 109.46711 * 59.99866 * 23 21 20 43 43 H 1.08994 * 109.47044 * 179.97438 * 23 21 20 44 44 H 1.08996 * 109.46818 * 300.00394 * 23 21 20 45 45 H 1.08997 * 109.46822 * 65.93594 * 24 21 20 46 46 H 1.09003 * 109.46999 * 185.93608 * 24 21 20 47 47 H 1.08997 * 109.46846 * 305.93630 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4505 1.2121 -0.5245 5 6 3.2982 0.1053 -1.5930 6 6 1.9991 -0.6354 -1.2259 7 1 1.2758 -0.5403 -2.0359 8 6 2.2938 -2.0899 -0.9640 9 8 2.4828 -2.4757 0.1701 10 7 2.3472 -2.9620 -1.9901 11 6 2.2314 -2.4793 -3.3685 12 6 3.6021 -2.1539 -3.9036 13 1 4.4724 -2.2924 -3.2793 14 6 3.7450 -1.6784 -5.1899 15 7 2.6852 -1.5093 -5.9500 16 14 5.4440 -1.2744 -5.8529 17 1 6.2892 -2.4950 -5.8256 18 1 5.3267 -0.7852 -7.2502 19 1 6.0668 -0.2220 -5.0103 20 6 2.5211 -4.3928 -1.7273 21 6 1.1503 -5.0498 -1.5545 22 6 0.2834 -4.7508 -2.7793 23 6 1.3246 -6.5631 -1.4102 24 6 0.4719 -4.4928 -0.3013 25 1 -0.3634 -1.0266 -0.0467 26 1 -0.3633 0.4729 0.9124 27 1 -0.3634 0.5537 -0.8657 28 1 1.4238 2.0205 -0.6729 29 1 2.0013 1.7987 1.0091 30 1 4.1137 0.8862 0.2767 31 1 3.8132 2.1360 -0.9751 32 1 4.1470 -0.5775 -1.5540 33 1 3.2144 0.5470 -2.5860 34 1 1.7740 -3.2518 -3.9868 35 1 1.6113 -1.5832 -3.3888 36 1 2.7857 -1.1744 -6.8548 37 1 3.0428 -4.8553 -2.5650 38 1 3.1054 -4.5264 -0.8168 39 1 0.7667 -5.1477 -3.6721 40 1 -0.6930 -5.2193 -2.6564 41 1 0.1593 -3.6729 -2.8821 42 1 1.9422 -6.7760 -0.5376 43 1 0.3480 -7.0311 -1.2867 44 1 1.8079 -6.9598 -2.3030 45 1 0.2524 -3.4351 -0.4468 46 1 -0.4561 -5.0348 -0.1191 47 1 1.1362 -4.6116 0.5546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356982189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:33 Heat of formation + Delta-G solvation = -40.192639 kcal Electronic energy + Delta-G solvation = -24750.639259 eV Core-core repulsion = 21547.062261 eV Total energy + Delta-G solvation = -3203.576999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83454 -38.00159 -36.17959 -34.28247 -32.30827 -31.76665 -29.18407 -27.60720 -26.90523 -26.66549 -25.61756 -25.12933 -22.85846 -21.26583 -20.75854 -18.72626 -17.88485 -16.56175 -16.47391 -15.62830 -15.38788 -14.71624 -14.64383 -14.21505 -13.88448 -13.63233 -13.28214 -13.12985 -13.02428 -12.61205 -12.39842 -12.05357 -11.98777 -11.79644 -11.58400 -11.44877 -11.25753 -11.15734 -11.07114 -10.92723 -10.84451 -10.82631 -10.63952 -10.43271 -10.36478 -10.30123 -10.15976 -9.98374 -9.62614 -8.86136 -8.55540 -7.96196 -7.54173 -6.16734 -4.23012 3.23264 3.28631 3.31278 3.54941 3.84626 4.32709 4.55629 5.03715 5.06961 5.16331 5.24844 5.25029 5.36867 5.38685 5.57313 5.60307 5.70129 5.74040 5.83647 5.92122 5.94121 5.97632 6.06115 6.10249 6.15972 6.21965 6.23682 6.25035 6.28698 6.37856 6.44989 6.54829 6.61230 6.61515 6.70878 6.76324 6.84460 6.92916 7.12419 7.25353 7.30865 7.65776 7.80177 8.09941 8.46969 8.83802 9.22461 9.44553 10.89400 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.008991 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.915813 B = 3113.499472 C = 4977.229276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.501 5.501 3 C 0.038 3.962 4 C -0.125 4.125 5 C -0.103 4.103 6 C 0.055 3.945 7 H 0.074 0.926 8 C 0.528 3.472 9 O -0.549 6.549 10 N -0.596 5.596 11 C 0.235 3.765 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.132 3.868 21 C -0.086 4.086 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.126 4.126 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 0.167 7.037 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.225 5.225 3 C -0.090 4.090 4 C -0.163 4.163 5 C -0.142 4.142 6 C -0.056 4.056 7 H 0.092 0.908 8 C 0.315 3.685 9 O -0.428 6.428 10 N -0.327 5.327 11 C 0.115 3.885 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 C 0.008 3.992 21 C -0.087 4.087 22 C -0.194 4.194 23 C -0.193 4.193 24 C -0.183 4.183 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.917 -0.268 7.890 8.812 hybrid contribution 0.547 0.683 -1.482 1.721 sum -3.370 0.415 6.407 7.251 Atomic orbital electron populations 1.22485 0.88193 1.01888 1.00321 1.64341 1.07439 1.14008 1.36744 1.23232 0.95494 0.89713 1.00572 1.22552 0.96216 0.98714 0.98789 1.22185 0.96351 0.96768 0.98850 1.22312 0.98511 0.93398 0.91355 0.90786 1.20059 0.76839 0.87040 0.84558 1.90569 1.50498 1.79333 1.22369 1.48136 1.70530 1.05631 1.08449 1.19521 0.97243 0.95565 0.76174 1.21463 0.93105 1.44102 0.98252 0.92242 1.24897 0.96754 0.95391 0.96649 1.69908 1.28679 1.45566 1.08946 0.86660 0.84513 0.78957 0.77980 1.20198 1.21253 1.20067 1.21299 0.94953 0.81392 1.01527 1.20977 0.96728 0.94952 0.96020 1.21921 0.98220 1.02276 0.97028 1.21784 1.01182 0.94914 1.01454 1.21774 0.99117 1.00392 0.97061 0.91621 0.91495 0.95588 0.93974 0.90335 0.90991 0.91201 0.90386 0.90006 0.94086 0.94957 0.92590 0.90776 0.91171 0.92569 0.93875 0.91903 0.92886 0.93008 0.92698 0.93082 0.94172 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 60.07 0.56 0.86 16 2 N -0.50 -8.65 4.79 -232.06 -1.11 -9.76 16 3 C 0.04 0.55 6.56 -1.81 -0.01 0.53 16 4 C -0.12 -1.89 7.08 -24.79 -0.18 -2.07 16 5 C -0.10 -1.91 5.62 -25.38 -0.14 -2.06 16 6 C 0.06 1.06 2.07 -67.80 -0.14 0.92 16 7 H 0.07 1.47 5.91 -51.92 -0.31 1.16 16 8 C 0.53 11.09 5.17 -10.99 -0.06 11.04 16 9 O -0.55 -12.57 14.62 5.56 0.08 -12.49 16 10 N -0.60 -12.34 1.95 -175.06 -0.34 -12.68 16 11 C 0.23 5.38 3.73 -5.19 -0.02 5.36 16 12 C -0.53 -13.29 8.52 -34.44 -0.29 -13.59 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -23.95 13.29 55.43 0.74 -23.21 16 16 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.13 2.47 4.61 -4.04 -0.02 2.45 16 21 C -0.09 -1.38 0.85 -154.51 -0.13 -1.51 16 22 C -0.14 -2.23 7.11 37.16 0.26 -1.97 16 23 C -0.14 -1.82 8.47 37.16 0.31 -1.51 16 24 C -0.13 -2.07 7.15 37.16 0.27 -1.81 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 28 H 0.04 0.57 7.96 -51.93 -0.41 0.16 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.60 7.61 -51.93 -0.40 1.20 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.04 0.98 6.12 -51.93 -0.32 0.67 16 35 H 0.03 0.78 5.85 -51.93 -0.30 0.48 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.07 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.36 7.38 -51.93 -0.38 0.97 16 39 H 0.06 0.93 7.83 -51.93 -0.41 0.53 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.14 6.17 -51.93 -0.32 0.82 16 42 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.93 6.61 -51.93 -0.34 0.59 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -27.72 358.28 -8.56 -36.28 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.62 Total: 3.01 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.32 Total: -1.74 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.72 Total: -45.65 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.72 -8.56 -36.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.915 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds