Wall clock time and date at job start Tue Mar 31 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 C 1.53008 * 109.47076 * 183.05543 * 3 2 1 5 5 H 1.09004 * 109.46938 * 300.31620 * 4 3 2 6 6 N 1.46896 * 109.47023 * 60.31449 * 4 3 2 7 7 C 1.46898 * 111.00023 * 227.24546 * 6 4 3 8 8 C 1.52999 * 109.47529 * 154.07896 * 7 6 4 9 9 C 1.52997 * 109.47059 * 274.07827 * 7 6 4 10 10 C 1.50693 * 109.47099 * 180.31435 * 4 3 2 11 11 O 1.21289 * 120.00174 * 240.00069 * 10 4 3 12 12 N 1.34779 * 120.00372 * 60.00038 * 10 4 3 13 13 C 1.46494 * 120.00107 * 179.97438 * 12 10 4 14 14 C 1.53009 * 109.46856 * 176.00309 * 13 12 10 15 15 C 1.50699 * 115.54913 * 64.30006 * 14 13 12 16 16 H 1.07995 * 119.99890 * 264.82261 * 15 14 13 17 17 C 1.37878 * 120.00115 * 84.81933 * 15 14 13 18 18 N 1.31516 * 119.99954 * 355.59281 * 17 15 14 19 19 Si 1.86799 * 120.00125 * 175.60049 * 17 15 14 20 20 H 1.48504 * 109.46839 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47676 * 119.99767 * 19 17 15 22 22 H 1.48498 * 109.47316 * 240.00166 * 19 17 15 23 23 C 1.52992 * 117.49825 * 278.62798 * 14 13 12 24 24 C 1.52998 * 117.49945 * 209.96723 * 14 13 12 25 25 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46806 * 300.00250 * 1 2 3 27 27 H 1.08998 * 109.47232 * 59.99767 * 1 2 3 28 28 H 1.09000 * 109.47063 * 240.00211 * 2 1 3 29 29 H 1.08994 * 109.47503 * 119.99797 * 2 1 3 30 30 H 1.08996 * 109.47328 * 63.05802 * 3 2 1 31 31 H 1.09004 * 109.47391 * 303.05118 * 3 2 1 32 32 H 1.00902 * 111.00207 * 103.28814 * 6 4 3 33 33 H 1.08999 * 109.47338 * 34.07738 * 7 6 4 34 34 H 1.09008 * 109.47207 * 59.99631 * 8 7 6 35 35 H 1.09001 * 109.47454 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47157 * 300.00361 * 8 7 6 37 37 H 1.08997 * 109.47364 * 299.99777 * 9 7 6 38 38 H 1.09002 * 109.47597 * 59.99872 * 9 7 6 39 39 H 1.09001 * 109.47284 * 180.02562 * 9 7 6 40 40 H 0.97003 * 119.99818 * 0.27374 * 12 10 4 41 41 H 1.08999 * 109.47229 * 295.99906 * 13 12 10 42 42 H 1.08995 * 109.47445 * 56.00679 * 13 12 10 43 43 H 0.97006 * 120.00021 * 185.01813 * 18 17 15 44 44 H 1.08997 * 117.50649 * 0.02562 * 23 14 13 45 45 H 1.09004 * 117.49592 * 145.02147 * 23 14 13 46 46 H 1.09003 * 117.49804 * 214.98528 * 24 14 13 47 47 H 1.09006 * 117.49590 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5681 1.4432 -0.0769 5 1 3.9753 0.9089 0.7815 6 7 3.9963 0.7790 -1.3152 7 6 5.0648 -0.1933 -1.0487 8 6 5.0464 -1.2794 -2.1261 9 6 6.4186 0.5192 -1.0658 10 6 4.0708 2.8638 -0.0691 11 8 4.7218 3.2819 -1.0032 12 7 3.7970 3.6699 0.9758 13 6 4.2862 5.0507 0.9836 14 6 3.7570 5.7722 2.2248 15 6 4.2417 5.2332 3.5460 16 1 3.6436 4.5162 4.0887 17 6 5.4486 5.6552 4.0618 18 7 6.2172 6.4609 3.3619 19 14 5.9924 5.0826 5.7547 20 1 4.9562 4.1886 6.3312 21 1 7.2754 4.3439 5.6391 22 1 6.1774 6.2604 6.6399 23 6 2.3312 6.3238 2.1670 24 6 3.5249 7.2808 2.1197 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7221 1.9403 0.9161 31 1 1.6326 1.9720 -0.8614 32 1 4.2863 1.4546 -2.0062 33 1 4.9062 -0.6486 -0.0711 34 1 5.2050 -0.8241 -3.1038 35 1 5.8395 -2.0006 -1.9286 36 1 4.0819 -1.7870 -2.1140 37 1 6.5773 0.9745 -2.0433 38 1 6.4318 1.2930 -0.2982 39 1 7.2114 -0.2023 -0.8685 40 1 3.2798 3.3344 1.7247 41 1 5.3761 5.0500 1.0008 42 1 3.9373 5.5649 0.0881 43 1 7.0975 6.6998 3.6921 44 1 1.7698 6.1724 1.2451 45 1 1.7437 6.2972 3.0848 46 1 3.7224 7.8834 3.0063 47 1 3.7496 7.7594 1.1664 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357675846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:23 Heat of formation + Delta-G solvation = -40.931086 kcal Electronic energy + Delta-G solvation = -23317.138939 eV Core-core repulsion = 20113.529919 eV Total energy + Delta-G solvation = -3203.609020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73102 -37.26280 -36.38633 -34.90112 -33.27850 -32.01864 -31.40042 -27.87602 -27.05251 -26.33979 -25.33302 -23.39363 -21.25070 -20.98996 -20.78575 -19.67065 -19.26246 -17.06786 -16.17573 -15.92967 -15.26415 -14.75932 -14.71731 -14.48462 -14.31803 -13.81769 -13.67455 -13.28662 -13.14698 -12.85925 -12.69533 -12.55913 -12.15838 -11.82331 -11.67477 -11.65291 -11.47861 -11.31610 -11.06751 -11.05300 -10.96717 -10.94902 -10.66791 -10.55971 -10.47857 -10.29853 -9.68520 -9.38081 -9.01737 -8.55579 -8.46833 -8.23242 -8.11338 -6.12598 -4.21877 3.11304 3.20970 3.30411 3.32129 3.80606 4.23749 4.31152 4.89951 4.93371 5.08909 5.13711 5.16471 5.21193 5.27486 5.34857 5.41845 5.46383 5.65939 5.69469 5.72438 5.84666 5.89995 5.93178 5.96361 5.98643 6.00796 6.14874 6.20735 6.29995 6.34748 6.36909 6.43155 6.49326 6.53222 6.66576 6.83601 7.05784 7.06689 7.23486 7.38008 7.44964 7.52705 7.76561 8.24255 8.29373 8.77829 8.81351 9.45606 10.95293 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.004715 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.384752 B = 5936.963057 C = 6459.538498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.100 4.100 4 C 0.067 3.933 5 H 0.092 0.908 6 N -0.664 5.664 7 C 0.077 3.923 8 C -0.136 4.136 9 C -0.179 4.179 10 C 0.484 3.516 11 O -0.558 6.558 12 N -0.697 5.697 13 C 0.163 3.837 14 C 0.026 3.974 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.209 4.209 24 C -0.147 4.147 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.357 0.643 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.401 0.599 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -12.645 -6.441 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.139 4.139 4 C -0.047 4.047 5 H 0.109 0.891 6 N -0.299 5.299 7 C -0.033 4.033 8 C -0.194 4.194 9 C -0.238 4.238 10 C 0.268 3.732 11 O -0.438 6.438 12 N -0.345 5.345 13 C 0.039 3.961 14 C 0.026 3.974 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.247 4.247 24 C -0.186 4.186 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.052 -12.622 -7.056 15.676 hybrid contribution 1.078 0.388 1.528 1.910 sum -4.973 -12.234 -5.529 14.317 Atomic orbital electron populations 1.21782 0.96448 1.01101 1.01627 1.21403 0.94892 0.96436 1.02464 1.21543 0.92320 0.97809 1.02184 1.21715 0.97173 0.91382 0.94446 0.89056 1.60887 1.39433 1.20121 1.09440 1.21697 0.89380 0.93155 0.99068 1.21735 1.01499 0.97590 0.98598 1.22489 0.97848 1.00698 1.02733 1.21271 0.80456 0.88568 0.82943 1.90624 1.41095 1.75987 1.36103 1.46008 1.54206 1.13619 1.20632 1.20983 0.99356 0.79419 0.96295 1.19040 0.91961 0.92573 0.93870 1.20385 1.05039 1.25866 1.02459 0.92138 1.24990 0.96710 0.94176 0.97164 1.69989 1.09185 1.33900 1.37973 0.86588 0.78610 0.78563 0.84559 1.19666 1.21038 1.20905 1.23014 0.92428 1.09168 1.00066 1.22488 1.01152 0.94510 1.00414 0.93179 0.92990 0.92915 0.90516 0.92743 0.91473 0.91471 0.81927 0.90813 0.92777 0.92755 0.92184 0.92268 0.92484 0.92703 0.76457 0.91231 0.94386 0.92891 0.91651 0.90353 0.89795 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.11 -1.19 5.82 -26.73 -0.16 -1.34 16 3 C -0.10 -1.20 4.83 -26.73 -0.13 -1.33 16 4 C 0.07 0.92 2.49 -68.87 -0.17 0.74 16 5 H 0.09 1.20 7.15 -51.93 -0.37 0.83 16 6 N -0.66 -8.64 5.29 -100.96 -0.53 -9.18 16 7 C 0.08 0.90 3.14 -67.72 -0.21 0.69 16 8 C -0.14 -1.34 9.52 37.16 0.35 -0.98 16 9 C -0.18 -2.33 9.17 37.16 0.34 -1.99 16 10 C 0.48 8.62 6.96 -10.99 -0.08 8.55 16 11 O -0.56 -11.68 15.40 5.55 0.09 -11.59 16 12 N -0.70 -13.12 5.36 -60.30 -0.32 -13.45 16 13 C 0.16 3.64 5.50 -4.04 -0.02 3.62 16 14 C 0.03 0.61 1.40 -155.66 -0.22 0.39 16 15 C -0.50 -12.62 8.56 -34.44 -0.29 -12.92 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.07 1.93 5.40 -17.82 -0.10 1.83 16 18 N -0.87 -24.05 12.88 55.43 0.71 -23.33 16 19 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.21 -4.30 9.96 -26.70 -0.27 -4.56 16 24 C -0.15 -3.35 9.40 -26.70 -0.25 -3.60 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.36 5.35 6.74 -39.29 -0.26 5.08 16 33 H 0.07 0.83 7.35 -51.93 -0.38 0.45 16 34 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 6.99 7.73 -40.82 -0.32 6.67 16 41 H 0.07 1.80 8.14 -51.93 -0.42 1.37 16 42 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 46 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -27.46 380.09 -9.01 -36.47 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -8.83 Total: 12.05 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.83 Total: -11.98 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.14 Total: -45.96 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.46 -9.01 -36.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357675846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.459 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds