Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47125 * 2 1 4 4 C 1.52996 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47012 * 56.65232 * 4 3 2 6 6 N 1.46901 * 109.47154 * 296.65943 * 4 3 2 7 7 C 1.46898 * 111.00397 * 131.44673 * 6 4 3 8 8 C 1.53007 * 109.46880 * 204.86464 * 7 6 4 9 9 C 1.52992 * 109.47256 * 84.86304 * 7 6 4 10 10 C 1.50697 * 109.47286 * 176.65686 * 4 3 2 11 11 O 1.21281 * 120.00061 * 94.64083 * 10 4 3 12 12 N 1.34777 * 119.99817 * 274.63979 * 10 4 3 13 13 C 1.46495 * 119.99952 * 180.02562 * 12 10 4 14 14 C 1.53000 * 109.47071 * 185.03795 * 13 12 10 15 15 C 1.50700 * 115.55487 * 61.80036 * 14 13 12 16 16 H 1.07999 * 120.00175 * 266.64638 * 15 14 13 17 17 C 1.37880 * 120.00131 * 86.63791 * 15 14 13 18 18 N 1.31516 * 119.99748 * 0.79036 * 17 15 14 19 19 Si 1.86801 * 120.00131 * 180.78715 * 17 15 14 20 20 H 1.48499 * 109.47222 * 90.00055 * 19 17 15 21 21 H 1.48500 * 109.47128 * 210.00267 * 19 17 15 22 22 H 1.48498 * 109.46909 * 329.99987 * 19 17 15 23 23 C 1.52997 * 117.49851 * 276.12986 * 14 13 12 24 24 C 1.53000 * 117.49886 * 207.47069 * 14 13 12 25 25 H 1.08999 * 109.46667 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47290 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.47202 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47290 * 240.00123 * 2 1 3 29 29 H 1.08998 * 109.47646 * 120.00110 * 2 1 3 30 30 H 1.09000 * 109.46936 * 59.99906 * 3 2 1 31 31 H 1.09000 * 109.46941 * 299.99989 * 3 2 1 32 32 H 1.00905 * 111.00169 * 7.48571 * 6 4 3 33 33 H 1.09000 * 109.46624 * 324.86029 * 7 6 4 34 34 H 1.08992 * 109.46985 * 299.99536 * 8 7 6 35 35 H 1.08999 * 109.47082 * 59.99897 * 8 7 6 36 36 H 1.08998 * 109.46616 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47143 * 54.24674 * 9 7 6 38 38 H 1.09004 * 109.47082 * 174.24609 * 9 7 6 39 39 H 1.09000 * 109.47441 * 294.24660 * 9 7 6 40 40 H 0.96998 * 120.00049 * 359.97438 * 12 10 4 41 41 H 1.09006 * 109.47263 * 305.03404 * 13 12 10 42 42 H 1.08996 * 109.47823 * 65.03536 * 13 12 10 43 43 H 0.96998 * 119.99780 * 185.03524 * 18 17 15 44 44 H 1.08999 * 117.49790 * 359.97438 * 23 14 13 45 45 H 1.08998 * 117.50173 * 145.02476 * 23 14 13 46 46 H 1.09002 * 117.49998 * 214.97606 * 24 14 13 47 47 H 1.09001 * 117.50276 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9330 0.8779 -0.8594 6 7 4.0602 0.8211 1.2368 7 6 5.0915 -0.1844 0.9482 8 6 5.1359 -1.2096 2.0832 9 6 6.4534 0.5020 0.8274 10 6 4.0722 2.8611 -0.0835 11 8 4.3548 3.4645 0.9299 12 7 4.2073 3.4591 -1.2838 13 6 4.6960 4.8377 -1.3644 14 6 4.6367 5.3158 -2.8166 15 6 3.2619 5.3537 -3.4328 16 1 2.8983 4.5060 -3.9944 17 6 2.4683 6.4707 -3.2794 18 7 2.9170 7.5091 -2.6085 19 14 0.7557 6.5092 -4.0246 20 1 -0.2242 5.9833 -3.0405 21 1 0.4009 7.9072 -4.3779 22 1 0.7292 5.6676 -5.2478 23 6 5.8098 4.9516 -3.7287 24 6 5.6336 6.3937 -3.2468 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.3004 0.4186 1.7649 33 1 4.8546 -0.6893 0.0117 34 1 5.3727 -0.7048 3.0197 35 1 4.1656 -1.6986 2.1693 36 1 5.9008 -1.9559 1.8688 37 1 6.6445 1.0906 1.7246 38 1 7.2319 -0.2526 0.7152 39 1 6.4541 1.1571 -0.0438 40 1 3.9816 2.9763 -2.0943 41 1 4.0720 5.4813 -0.7442 42 1 5.7259 4.8795 -1.0100 43 1 2.3337 8.2651 -2.4379 44 1 6.6240 4.3718 -3.2941 45 1 5.5873 4.7398 -4.7745 46 1 5.2952 7.1301 -3.9758 47 1 6.3315 6.7627 -2.4952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357675847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -35.119512 kcal Electronic energy + Delta-G solvation = -23323.063272 eV Core-core repulsion = 20119.706260 eV Total energy + Delta-G solvation = -3203.357011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.45240 -37.39578 -36.39244 -34.90284 -33.09458 -31.93995 -31.45846 -27.94926 -27.22070 -26.37906 -25.31284 -23.56116 -21.20179 -21.02793 -20.69981 -19.55520 -19.12822 -16.69666 -16.19459 -15.98408 -15.53398 -14.84383 -14.73368 -14.50827 -14.21977 -14.03640 -13.67913 -13.50830 -12.93323 -12.73106 -12.63362 -12.46077 -12.22426 -11.89195 -11.78878 -11.68363 -11.52058 -11.29532 -11.19177 -11.02896 -10.97913 -10.91113 -10.74286 -10.69137 -10.52867 -10.22531 -9.55801 -9.20810 -9.01324 -8.45363 -8.33717 -8.13451 -7.95602 -6.06151 -4.15225 3.25888 3.33819 3.34532 3.35904 3.73263 4.34309 4.38145 4.78421 4.86068 4.87089 4.94039 5.01034 5.22291 5.24193 5.28517 5.33159 5.45994 5.53298 5.59344 5.62053 5.71523 5.76278 5.82023 5.83142 5.88292 6.03924 6.07303 6.09093 6.13083 6.25022 6.36520 6.40275 6.51834 6.59056 6.72314 6.91513 7.04946 7.14120 7.39881 7.43239 7.45404 7.56882 7.81997 8.35797 8.45841 8.85713 9.09505 9.51650 11.01878 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.005103 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.189009 B = 5485.400969 C = 6767.803197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.075 3.925 5 H 0.072 0.928 6 N -0.662 5.662 7 C 0.080 3.920 8 C -0.153 4.153 9 C -0.140 4.140 10 C 0.509 3.491 11 O -0.535 6.535 12 N -0.708 5.708 13 C 0.167 3.833 14 C 0.025 3.975 15 C -0.496 4.496 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.213 4.213 24 C -0.143 4.143 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.345 0.655 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.396 0.604 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -16.577 4.507 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.039 4.039 5 H 0.090 0.910 6 N -0.296 5.296 7 C -0.029 4.029 8 C -0.211 4.211 9 C -0.198 4.198 10 C 0.293 3.707 11 O -0.411 6.411 12 N -0.358 5.358 13 C 0.043 3.957 14 C 0.024 3.976 15 C -0.534 4.534 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.250 4.250 24 C -0.181 4.181 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.987 -15.399 5.391 16.345 hybrid contribution -1.598 -0.680 -1.174 2.096 sum -0.611 -16.079 4.217 16.634 Atomic orbital electron populations 1.21750 0.95376 1.01455 1.02341 1.21560 0.96439 0.96403 1.01687 1.21925 0.92991 0.97445 1.04444 1.21563 0.95055 0.94473 0.92812 0.91008 1.60072 1.15865 1.34180 1.19515 1.21639 0.93330 0.91018 0.96946 1.21963 1.01574 0.98283 0.99245 1.21795 0.95012 1.00110 1.02897 1.20416 0.78564 0.88011 0.83728 1.90627 1.49753 1.65603 1.35104 1.45970 1.66328 1.15852 1.07662 1.20904 0.96076 0.80638 0.98049 1.19060 0.90483 0.98508 0.89542 1.20318 0.98248 1.00846 1.33944 0.92332 1.24974 0.97966 0.95071 0.95025 1.69991 1.35201 1.06390 1.39509 0.86661 0.84848 0.77325 0.79602 1.20648 1.21219 1.19875 1.23036 1.02188 0.99851 0.99912 1.22448 1.02205 0.90868 1.02572 0.92862 0.92548 0.92358 0.91938 0.92303 0.90436 0.89988 0.83390 0.94018 0.91612 0.92937 0.92017 0.91631 0.92950 0.92970 0.77087 0.91341 0.94909 0.92911 0.91778 0.90459 0.89606 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.19 5.77 -26.73 -0.15 -1.34 16 3 C -0.13 -1.64 4.61 -26.73 -0.12 -1.76 16 4 C 0.07 1.05 2.46 -68.87 -0.17 0.88 16 5 H 0.07 0.91 7.17 -51.92 -0.37 0.54 16 6 N -0.66 -8.72 5.75 -100.96 -0.58 -9.30 16 7 C 0.08 0.89 3.14 -67.71 -0.21 0.68 16 8 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 9 C -0.14 -1.75 9.40 37.15 0.35 -1.40 16 10 C 0.51 9.71 7.04 -10.99 -0.08 9.63 16 11 O -0.53 -12.40 16.62 5.56 0.09 -12.31 16 12 N -0.71 -13.87 5.42 -60.30 -0.33 -14.19 16 13 C 0.17 3.83 5.51 -4.04 -0.02 3.80 16 14 C 0.02 0.59 1.48 -155.66 -0.23 0.35 16 15 C -0.50 -12.72 8.58 -34.44 -0.30 -13.01 16 16 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.07 1.95 5.42 -17.82 -0.10 1.86 16 18 N -0.87 -24.41 12.66 55.43 0.70 -23.71 16 19 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.21 -4.45 9.95 -26.70 -0.27 -4.72 16 24 C -0.14 -3.31 9.16 -26.69 -0.24 -3.55 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.51 6.69 -51.93 -0.35 0.16 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.34 3.97 6.22 -39.29 -0.24 3.73 16 33 H 0.04 0.44 7.39 -51.93 -0.38 0.05 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 7.06 8.36 -40.82 -0.34 6.72 16 41 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 42 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 47 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -29.75 381.39 -9.06 -38.81 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.84 Total: 10.04 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.83 Total: -10.62 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.21 Total: -47.20 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.75 -9.06 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357675847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.693 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds