Wall clock time and date at job start Tue Mar 31 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47404 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47050 * 304.99966 * 4 3 2 6 6 C 1.52999 * 109.46867 * 64.99929 * 4 3 2 7 7 C 1.50698 * 109.47154 * 184.99897 * 4 3 2 8 8 O 1.21289 * 119.99811 * 0.02562 * 7 4 3 9 9 N 1.34767 * 120.00300 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00637 * 180.02562 * 9 7 4 11 11 C 1.52997 * 109.47269 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49927 * 54.93460 * 11 10 9 13 13 C 1.53043 * 109.49502 * 175.00350 * 11 10 9 14 14 C 1.53036 * 109.53940 * 181.31779 * 13 11 10 15 15 C 1.53192 * 109.31280 * 298.63365 * 14 13 11 16 16 N 1.46926 * 108.77692 * 54.63305 * 15 14 13 17 17 C 1.36932 * 120.63437 * 126.37170 * 16 15 14 18 18 H 1.07998 * 120.00024 * 208.01250 * 17 16 15 19 19 C 1.38817 * 119.99771 * 28.01014 * 17 16 15 20 20 N 1.31622 * 120.00082 * 17.53622 * 19 17 16 21 21 Si 1.86799 * 119.99935 * 197.53903 * 19 17 16 22 22 H 1.48492 * 109.47248 * 94.06461 * 21 19 17 23 23 H 1.48503 * 109.46946 * 214.06691 * 21 19 17 24 24 H 1.48502 * 109.47045 * 334.06135 * 21 19 17 25 25 C 1.46927 * 118.73452 * 306.64500 * 16 15 14 26 26 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47446 * 300.00140 * 1 2 3 28 28 H 1.09007 * 109.47252 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.47446 * 239.99860 * 2 1 3 30 30 H 1.09007 * 109.47252 * 119.99993 * 2 1 3 31 31 H 1.09003 * 109.46933 * 59.99546 * 3 2 1 32 32 H 1.08996 * 109.47195 * 299.99821 * 3 2 1 33 33 H 1.08998 * 109.46926 * 179.97438 * 6 4 3 34 34 H 1.08994 * 109.47429 * 299.99867 * 6 4 3 35 35 H 1.09004 * 109.46985 * 60.00213 * 6 4 3 36 36 H 0.97004 * 120.00309 * 0.02562 * 9 7 4 37 37 H 1.09004 * 109.46916 * 59.99988 * 10 9 7 38 38 H 1.09004 * 109.47129 * 300.00144 * 10 9 7 39 39 H 1.08994 * 109.46541 * 61.29154 * 13 11 10 40 40 H 1.09000 * 109.45954 * 301.33509 * 13 11 10 41 41 H 1.08992 * 109.50137 * 178.68089 * 14 13 11 42 42 H 1.09003 * 109.52586 * 58.59892 * 14 13 11 43 43 H 1.09001 * 109.58623 * 294.84661 * 15 14 13 44 44 H 1.09001 * 109.70784 * 174.49138 * 15 14 13 45 45 H 0.96996 * 119.99748 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.58772 * 173.14442 * 25 16 15 47 47 H 1.08994 * 109.58876 * 293.56652 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8578 0.1245 8 8 3.2841 3.7762 0.2048 9 7 5.3973 3.1032 0.1459 10 6 5.8857 4.4791 0.2668 11 6 7.4157 4.4792 0.2661 12 1 7.7791 3.9650 -0.6236 13 6 7.9264 5.9219 0.2667 14 6 9.4564 5.9233 0.2328 15 6 9.9915 5.2204 1.4843 16 7 9.3910 3.8821 1.5684 17 6 10.1801 2.7697 1.6909 18 1 9.8351 1.8187 1.3130 19 6 11.4234 2.8645 2.3009 20 7 11.7077 3.9032 3.0578 21 14 12.6931 1.5179 2.0477 22 1 13.5891 1.8877 0.9227 23 1 13.4954 1.3548 3.2866 24 1 12.0040 0.2408 1.7325 25 6 7.9279 3.7596 1.5124 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1705 0.8330 -1.3061 34 1 3.7172 -0.1911 -1.3960 35 1 3.7175 1.4220 -2.1485 36 1 6.0278 2.3688 0.0813 37 1 5.5224 4.9131 1.1985 38 1 5.5223 5.0690 -0.5747 39 1 7.5827 6.4284 1.1685 40 1 7.5433 6.4431 -0.6106 41 1 9.8189 6.9509 0.2096 42 1 9.8015 5.3956 -0.6564 43 1 9.7242 5.7971 2.3698 44 1 11.0760 5.1309 1.4203 45 1 12.5763 3.9692 3.4843 46 1 7.6509 2.7064 1.4643 47 1 7.4889 4.2148 2.4002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358192043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:15 Heat of formation + Delta-G solvation = -55.659886 kcal Electronic energy + Delta-G solvation = -22808.466073 eV Core-core repulsion = 19604.218364 eV Total energy + Delta-G solvation = -3204.247709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93501 -37.91371 -36.10804 -34.77727 -33.08692 -32.14504 -30.46687 -30.19557 -26.80719 -25.79541 -25.28643 -23.63215 -22.12950 -21.26864 -20.81310 -19.82231 -18.99380 -17.02874 -16.58329 -15.93674 -15.72429 -15.13593 -14.83063 -14.41483 -14.10085 -13.89029 -13.77257 -13.44491 -13.24632 -12.80472 -12.71861 -12.43778 -12.36431 -12.19475 -12.17060 -12.00959 -11.40277 -11.31258 -11.13643 -11.04832 -10.97198 -10.74119 -10.69398 -10.50200 -10.23154 -10.19289 -9.95586 -9.75110 -9.47670 -9.43977 -8.87708 -8.48979 -6.70250 -5.81691 -3.24364 2.75407 3.32119 3.35030 3.42041 3.43369 4.45582 4.57260 4.61731 4.73007 4.97820 5.04530 5.10422 5.13098 5.28870 5.36194 5.43171 5.45659 5.47508 5.59472 5.61103 5.64899 5.69160 5.78548 5.82569 5.89476 5.94748 5.97474 6.01293 6.14084 6.22325 6.22904 6.32586 6.37187 6.55113 6.57831 6.69328 6.76627 6.84543 6.95247 7.37626 7.63892 7.65683 7.76070 8.34372 8.41748 9.18074 9.81713 10.38702 11.26736 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.003560 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.877455 B = 7864.284825 C = 8900.504834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.514 3.486 8 O -0.549 6.549 9 N -0.723 5.723 10 C 0.127 3.873 11 C -0.117 4.117 12 H 0.072 0.928 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.155 3.845 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.049 0.951 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 -4.518 -7.854 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.426 6.426 9 N -0.375 5.375 10 C 0.003 3.997 11 C -0.138 4.138 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.028 3.972 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -15.719 -3.827 -7.676 17.907 hybrid contribution 1.119 -0.936 -0.062 1.460 sum -14.600 -4.764 -7.738 17.197 Atomic orbital electron populations 1.21760 0.95870 1.01392 1.01936 1.21608 0.95921 0.96773 1.02109 1.21417 0.92376 0.96497 1.03452 1.21351 0.97753 0.93711 1.00616 0.88463 1.21829 1.01386 1.01257 0.95825 1.20647 0.82288 0.91239 0.75798 1.90674 1.55453 1.46548 1.49971 1.46115 1.06975 1.10126 1.74252 1.21444 0.94492 0.82254 1.01522 1.21870 0.91801 0.98329 1.01798 0.90947 1.21339 0.97009 0.94864 1.00564 1.22166 0.94518 0.99602 1.01795 1.20797 0.99266 0.84185 0.91462 1.44028 0.99162 1.03274 1.84913 1.19174 0.98419 0.89123 1.31676 0.91725 1.25042 0.99949 0.97768 0.96844 1.70047 1.22024 1.30809 1.31632 0.86282 0.81774 0.81527 0.77218 1.21474 1.21780 1.20395 1.20801 0.86198 0.97177 0.93036 0.92884 0.92703 0.92771 0.91754 0.91965 0.91151 0.91420 0.91969 0.91271 0.92180 0.76255 0.91694 0.92114 0.92483 0.93459 0.93179 0.92770 0.96445 0.89599 0.93616 0.93213 0.96426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.13 -0.99 5.69 -26.74 -0.15 -1.15 16 3 C -0.10 -0.99 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.15 2.73 -91.77 -0.25 -1.40 16 5 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 7 C 0.51 7.08 7.15 -10.99 -0.08 7.00 16 8 O -0.55 -9.54 15.92 5.55 0.09 -9.45 16 9 N -0.72 -9.63 5.22 -60.29 -0.31 -9.95 16 10 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 11 C -0.12 -1.92 2.36 -90.72 -0.21 -2.13 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 3.97 5.32 -3.71 -0.02 3.95 16 16 N -0.59 -14.42 3.00 -172.58 -0.52 -14.94 16 17 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 18 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 20 N -0.90 -25.91 11.22 55.49 0.62 -25.29 16 21 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.15 3.09 5.58 -3.93 -0.02 3.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.40 4.81 7.11 -40.82 -0.29 4.52 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.05 0.95 7.13 -51.93 -0.37 0.58 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -30.57 364.09 -9.14 -39.71 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.78 Total: 1.28 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.70 Total: -3.12 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.21 Total: -50.18 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.57 -9.14 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.952 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds