Wall clock time and date at job start Tue Mar 31 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47404 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47050 * 304.99966 * 4 3 2 6 6 C 1.52999 * 109.46867 * 64.99929 * 4 3 2 7 7 C 1.50698 * 109.47154 * 184.99897 * 4 3 2 8 8 O 1.21289 * 119.99811 * 0.02562 * 7 4 3 9 9 N 1.34767 * 120.00300 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00637 * 180.02562 * 9 7 4 11 11 C 1.52997 * 109.47269 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49927 * 54.93460 * 11 10 9 13 13 C 1.53043 * 109.49502 * 175.00350 * 11 10 9 14 14 C 1.53036 * 109.53940 * 181.31779 * 13 11 10 15 15 C 1.53192 * 109.31280 * 298.63365 * 14 13 11 16 16 N 1.46926 * 108.77692 * 54.63305 * 15 14 13 17 17 C 1.36932 * 120.63437 * 126.37170 * 16 15 14 18 18 H 1.07998 * 120.00024 * 208.01250 * 17 16 15 19 19 C 1.38817 * 119.99771 * 28.01014 * 17 16 15 20 20 N 1.31622 * 120.00082 * 17.53622 * 19 17 16 21 21 Si 1.86799 * 119.99935 * 197.53903 * 19 17 16 22 22 H 1.48492 * 109.47248 * 94.06461 * 21 19 17 23 23 H 1.48503 * 109.46946 * 214.06691 * 21 19 17 24 24 H 1.48502 * 109.47045 * 334.06135 * 21 19 17 25 25 C 1.46927 * 118.73452 * 306.64500 * 16 15 14 26 26 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47446 * 300.00140 * 1 2 3 28 28 H 1.09007 * 109.47252 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.47446 * 239.99860 * 2 1 3 30 30 H 1.09007 * 109.47252 * 119.99993 * 2 1 3 31 31 H 1.09003 * 109.46933 * 59.99546 * 3 2 1 32 32 H 1.08996 * 109.47195 * 299.99821 * 3 2 1 33 33 H 1.08998 * 109.46926 * 179.97438 * 6 4 3 34 34 H 1.08994 * 109.47429 * 299.99867 * 6 4 3 35 35 H 1.09004 * 109.46985 * 60.00213 * 6 4 3 36 36 H 0.97004 * 120.00309 * 0.02562 * 9 7 4 37 37 H 1.09004 * 109.46916 * 59.99988 * 10 9 7 38 38 H 1.09004 * 109.47129 * 300.00144 * 10 9 7 39 39 H 1.08994 * 109.46541 * 61.29154 * 13 11 10 40 40 H 1.09000 * 109.45954 * 301.33509 * 13 11 10 41 41 H 1.08992 * 109.50137 * 178.68089 * 14 13 11 42 42 H 1.09003 * 109.52586 * 58.59892 * 14 13 11 43 43 H 1.09001 * 109.58623 * 294.84661 * 15 14 13 44 44 H 1.09001 * 109.70784 * 174.49138 * 15 14 13 45 45 H 0.96996 * 119.99748 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.58772 * 173.14442 * 25 16 15 47 47 H 1.08994 * 109.58876 * 293.56652 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8578 0.1245 8 8 3.2841 3.7762 0.2048 9 7 5.3973 3.1032 0.1459 10 6 5.8857 4.4791 0.2668 11 6 7.4157 4.4792 0.2661 12 1 7.7791 3.9650 -0.6236 13 6 7.9264 5.9219 0.2667 14 6 9.4564 5.9233 0.2328 15 6 9.9915 5.2204 1.4843 16 7 9.3910 3.8821 1.5684 17 6 10.1801 2.7697 1.6909 18 1 9.8351 1.8187 1.3130 19 6 11.4234 2.8645 2.3009 20 7 11.7077 3.9032 3.0578 21 14 12.6931 1.5179 2.0477 22 1 13.5891 1.8877 0.9227 23 1 13.4954 1.3548 3.2866 24 1 12.0040 0.2408 1.7325 25 6 7.9279 3.7596 1.5124 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1705 0.8330 -1.3061 34 1 3.7172 -0.1911 -1.3960 35 1 3.7175 1.4220 -2.1485 36 1 6.0278 2.3688 0.0813 37 1 5.5224 4.9131 1.1985 38 1 5.5223 5.0690 -0.5747 39 1 7.5827 6.4284 1.1685 40 1 7.5433 6.4431 -0.6106 41 1 9.8189 6.9509 0.2096 42 1 9.8015 5.3956 -0.6564 43 1 9.7242 5.7971 2.3698 44 1 11.0760 5.1309 1.4203 45 1 12.5763 3.9692 3.4843 46 1 7.6509 2.7064 1.4643 47 1 7.4889 4.2148 2.4002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358192043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:15 Heat of formation + Delta-G solvation = -73.261402 kcal Electronic energy + Delta-G solvation = -22809.229332 eV Core-core repulsion = 19604.218364 eV Total energy + Delta-G solvation = -3205.010968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04667 -39.43656 -36.97451 -36.19712 -34.69577 -33.02286 -32.30001 -31.62459 -27.52134 -27.29947 -26.96967 -24.59257 -23.80759 -22.55002 -21.87266 -21.00166 -20.37181 -18.68196 -17.88893 -17.03990 -16.85358 -16.64316 -16.17952 -15.75761 -15.37319 -15.04183 -14.99685 -14.83478 -14.50527 -14.12817 -14.00449 -13.74996 -13.58606 -13.34131 -13.12023 -13.01415 -12.87748 -12.71595 -12.51963 -12.26157 -12.12337 -11.95056 -11.83109 -11.82375 -11.71182 -11.58267 -11.39225 -11.31882 -11.10718 -10.66321 -10.53274 -10.04285 -8.68389 -7.86638 -5.32269 1.47893 1.49456 1.58271 1.67607 2.26620 2.51670 3.28161 3.58948 3.72684 3.83833 3.98031 3.98803 4.02521 4.06435 4.32433 4.38594 4.40538 4.43109 4.57390 4.60033 4.67550 4.76326 4.82644 4.87404 4.90369 4.92889 4.97459 5.01004 5.05004 5.09870 5.15082 5.22356 5.25832 5.32526 5.33062 5.39180 5.45993 5.49703 5.54196 5.57598 5.67048 5.77773 6.39107 6.58238 7.15062 7.26935 7.86388 8.38778 9.19979 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.003560 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.877455 B = 7864.284825 C = 8900.504834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.107 4.107 5 H 0.112 0.888 6 C -0.142 4.142 7 C 0.511 3.489 8 O -0.589 6.589 9 N -0.719 5.719 10 C 0.137 3.863 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.098 4.098 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.072 0.928 19 C -0.053 4.053 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.299 1.299 24 H -0.264 1.264 25 C 0.154 3.846 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.411 0.589 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.054 0.946 43 H -0.009 1.009 44 H 0.051 0.949 45 H 0.249 0.751 46 H 0.058 0.942 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 -6.027 -9.562 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.129 4.129 5 H 0.130 0.870 6 C -0.199 4.199 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.370 5.370 10 C 0.012 3.988 11 C -0.120 4.120 12 H 0.096 0.904 13 C -0.136 4.136 14 C -0.169 4.169 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.090 0.910 19 C -0.248 4.248 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.188 1.188 25 C 0.028 3.972 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -16.585 -5.360 -9.406 19.806 hybrid contribution 1.336 -0.442 0.512 1.497 sum -15.249 -5.802 -8.895 18.583 Atomic orbital electron populations 1.21777 0.95652 1.02077 1.01622 1.21585 0.96121 0.95168 1.03017 1.21381 0.92337 0.97774 1.01970 1.21396 0.97728 0.91439 1.02293 0.87004 1.21833 1.01682 1.02093 0.94300 1.21313 0.81867 0.92376 0.74577 1.90658 1.56351 1.48110 1.51796 1.46083 1.07237 1.09847 1.73860 1.21235 0.93005 0.83230 1.01287 1.21630 0.92716 0.97909 0.99720 0.90417 1.21340 0.95133 0.95151 1.01946 1.21992 0.96161 0.99927 0.98786 1.20634 0.97492 0.84355 0.92879 1.44301 1.00889 1.02951 1.85086 1.19568 0.98833 0.90068 1.30602 0.91004 1.25823 1.01924 1.00043 0.97051 1.70209 1.22103 1.32915 1.33118 0.85254 0.79179 0.79546 0.76489 1.21403 1.22559 1.18808 1.20921 0.83803 0.98211 0.94267 0.91672 0.93308 0.92891 0.90428 0.91363 0.93119 0.92511 0.91463 0.89234 0.92728 0.75260 0.92909 0.91262 0.92813 0.90221 0.91288 0.92732 0.99045 0.93032 0.94223 0.92397 0.97904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.65 5.69 30.59 0.17 -1.47 16 3 C -0.10 -1.82 4.03 30.60 0.12 -1.70 16 4 C -0.11 -1.99 2.73 -11.54 -0.03 -2.02 16 5 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 6 C -0.14 -2.01 8.84 71.98 0.64 -1.38 16 7 C 0.51 13.44 7.15 87.66 0.63 14.07 16 8 O -0.59 -20.24 15.92 -3.06 -0.05 -20.29 16 9 N -0.72 -17.88 5.22 -463.06 -2.42 -20.30 16 10 C 0.14 3.79 5.07 86.38 0.44 4.23 16 11 C -0.10 -3.06 2.36 -10.86 -0.03 -3.09 16 12 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 14 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 15 C 0.17 8.25 5.32 86.36 0.46 8.71 16 16 N -0.61 -29.80 3.00 -699.92 -2.10 -31.90 16 17 C -0.26 -13.91 9.58 84.04 0.81 -13.10 16 18 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 19 C -0.05 -2.93 4.90 84.86 0.42 -2.51 16 20 N -0.94 -55.43 11.22 21.65 0.24 -55.19 16 21 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 C 0.15 6.03 5.58 86.22 0.48 6.51 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 0.86 6.57 -2.39 -0.02 0.85 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 1.14 7.95 -2.39 -0.02 1.13 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.90 7.56 -2.39 -0.02 0.88 16 34 H 0.09 0.93 6.57 -2.39 -0.02 0.92 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.41 8.88 7.11 -92.71 -0.66 8.22 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.06 2.14 7.13 -2.38 -0.02 2.12 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -67.11 364.09 3.12 -63.99 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.26 Total: 18.07 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.16 Total: -0.41 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.27 Total: -107.39 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.11 3.12 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds