Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.52999 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47249 * 305.00232 * 4 3 2 6 6 C 1.53000 * 109.46924 * 64.99922 * 4 3 2 7 7 C 1.50701 * 109.47132 * 184.99745 * 4 3 2 8 8 O 1.21275 * 120.00215 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99764 * 179.97438 * 7 4 3 10 10 C 1.46507 * 120.00083 * 180.02562 * 9 7 4 11 11 C 1.52996 * 109.47100 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.50065 * 304.93284 * 11 10 9 13 13 C 1.53046 * 109.49418 * 184.83967 * 11 10 9 14 14 C 1.53044 * 109.53605 * 178.68770 * 13 11 10 15 15 C 1.53185 * 109.31683 * 61.36105 * 14 13 11 16 16 N 1.46964 * 108.89104 * 305.44666 * 15 14 13 17 17 C 1.36936 * 120.65500 * 233.53702 * 16 15 14 18 18 H 1.08001 * 120.00308 * 152.72311 * 17 16 15 19 19 C 1.38817 * 119.99752 * 332.72717 * 17 16 15 20 20 N 1.31623 * 119.99999 * 159.80555 * 19 17 16 21 21 Si 1.86798 * 119.99981 * 339.80499 * 19 17 16 22 22 H 1.48498 * 109.47064 * 94.88010 * 21 19 17 23 23 H 1.48500 * 109.47025 * 214.88286 * 21 19 17 24 24 H 1.48500 * 109.47233 * 334.87889 * 21 19 17 25 25 C 1.46924 * 118.71348 * 53.34947 * 16 15 14 26 26 H 1.09001 * 109.46957 * 300.00143 * 1 2 3 27 27 H 1.09004 * 109.47141 * 59.99946 * 1 2 3 28 28 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46957 * 239.99857 * 2 1 3 30 30 H 1.09004 * 109.47141 * 120.00054 * 2 1 3 31 31 H 1.09001 * 109.47247 * 60.00034 * 3 2 1 32 32 H 1.09004 * 109.47081 * 300.00091 * 3 2 1 33 33 H 1.08999 * 109.47319 * 60.00441 * 6 4 3 34 34 H 1.08999 * 109.47195 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47097 * 300.00014 * 6 4 3 36 36 H 0.97000 * 120.00361 * 0.02562 * 9 7 4 37 37 H 1.09004 * 109.46630 * 60.00065 * 10 9 7 38 38 H 1.08997 * 109.46721 * 300.00468 * 10 9 7 39 39 H 1.09004 * 109.45955 * 298.70029 * 13 11 10 40 40 H 1.08992 * 109.46093 * 58.67611 * 13 11 10 41 41 H 1.08998 * 109.49612 * 181.31679 * 14 13 11 42 42 H 1.09000 * 109.49050 * 301.40808 * 14 13 11 43 43 H 1.09002 * 109.58680 * 65.15586 * 15 14 13 44 44 H 1.09001 * 109.58739 * 185.57867 * 15 14 13 45 45 H 0.96999 * 119.99839 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58266 * 186.78523 * 25 16 15 47 47 H 1.08998 * 109.58538 * 66.50740 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8330 -1.3083 7 6 4.0724 2.8579 0.1231 8 8 3.2844 3.7761 0.2044 9 7 5.3975 3.1031 0.1446 10 6 5.8860 4.4790 0.2655 11 6 7.4159 4.4789 0.2647 12 1 7.7801 3.8190 1.0520 13 6 7.9268 5.9003 0.5117 14 6 9.4569 5.8958 0.5437 15 6 9.9907 5.4187 -0.8106 16 7 9.3897 4.1153 -1.1264 17 6 10.1780 3.0411 -1.4422 18 1 9.8280 2.0382 -1.2466 19 6 11.4272 3.2411 -2.0137 20 7 12.3367 2.2913 -1.9569 21 14 11.8174 4.8582 -2.8635 22 1 12.4987 5.7678 -1.9077 23 1 12.7067 4.6047 -4.0254 24 1 10.5569 5.4874 -3.3330 25 6 7.9265 3.9859 -1.0928 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7158 1.4226 -2.1499 34 1 5.1694 0.8334 -1.3090 35 1 3.7160 -0.1907 -1.3978 36 1 6.0278 2.3686 0.0800 37 1 5.5227 4.9129 1.1971 38 1 5.5225 5.0688 -0.5761 39 1 7.5824 6.5544 -0.2893 40 1 7.5449 6.2627 1.4661 41 1 9.8196 6.9042 0.7429 42 1 9.8023 5.2228 1.3285 43 1 9.7226 6.1391 -1.5833 44 1 11.0750 5.3190 -0.7614 45 1 13.2094 2.4309 -2.3565 46 1 7.6490 2.9408 -1.2299 47 1 7.4881 4.5878 -1.8887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358192047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -49.704128 kcal Electronic energy + Delta-G solvation = -22911.124680 eV Core-core repulsion = 19707.135233 eV Total energy + Delta-G solvation = -3203.989448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98465 -38.17472 -36.14680 -34.91661 -33.12047 -32.18681 -30.91190 -30.55697 -26.80754 -26.12583 -25.30288 -23.76092 -22.04025 -21.56600 -20.98311 -19.92362 -19.21699 -17.09474 -16.62586 -15.97852 -15.79600 -15.40151 -15.11589 -14.52696 -14.14731 -13.91741 -13.89439 -13.48758 -13.33517 -13.21211 -12.77726 -12.60570 -12.42643 -12.38231 -12.13666 -12.02628 -11.66566 -11.50190 -11.39601 -11.14879 -10.99344 -10.84111 -10.70098 -10.60118 -10.53636 -10.15921 -9.95001 -9.68585 -9.61480 -9.44796 -8.94304 -8.65081 -7.01000 -5.98358 -3.34403 2.71389 3.27274 3.30250 3.46703 3.49527 4.50330 4.57036 4.59278 4.72842 4.80504 4.98698 5.05442 5.12666 5.14267 5.21578 5.27100 5.35235 5.41563 5.49072 5.59085 5.60746 5.67843 5.69549 5.75676 5.79696 5.83945 5.93299 5.95956 6.01316 6.08452 6.11534 6.15723 6.21467 6.28427 6.35975 6.48129 6.54940 6.56448 6.67332 6.69753 6.94612 7.59541 7.91738 8.28224 8.29929 8.89874 9.68572 10.06659 11.17495 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.003563 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.823074 B = 7857.725853 C = 8676.523746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.147 4.147 7 C 0.515 3.485 8 O -0.549 6.549 9 N -0.725 5.725 10 C 0.127 3.873 11 C -0.119 4.119 12 H 0.077 0.923 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.124 3.876 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.157 3.843 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.263 0.737 46 H 0.059 0.941 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 -1.096 5.081 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.114 0.886 6 C -0.205 4.205 7 C 0.301 3.699 8 O -0.426 6.426 9 N -0.376 5.376 10 C 0.003 3.997 11 C -0.140 4.140 12 H 0.096 0.904 13 C -0.139 4.139 14 C -0.174 4.174 15 C -0.002 4.002 16 N -0.329 5.329 17 C -0.389 4.389 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.552 5.552 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.031 3.969 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.859 -0.504 5.068 18.571 hybrid contribution 0.803 0.564 -0.503 1.103 sum -17.056 0.060 4.565 17.657 Atomic orbital electron populations 1.21760 0.95876 1.01405 1.01918 1.21609 0.95912 0.96754 1.02141 1.21420 0.92390 0.96521 1.03421 1.21347 0.97728 0.93561 1.00689 0.88614 1.21845 1.01650 1.01271 0.95705 1.20667 0.82229 0.91300 0.75691 1.90671 1.55466 1.46563 1.49930 1.46117 1.07063 1.10028 1.74402 1.21415 0.94163 0.82550 1.01557 1.21941 0.92151 0.98442 1.01459 0.90421 1.21345 0.96342 0.95510 1.00691 1.21996 0.95030 1.00166 1.00163 1.21362 0.97899 0.87543 0.93352 1.44334 1.00624 1.07903 1.80056 1.18894 0.97868 0.86899 1.35225 0.89754 1.25262 0.96433 0.96925 0.98941 1.69831 1.04586 1.34067 1.46695 0.86930 0.77745 0.84461 0.79424 1.21702 1.23218 1.19470 1.20908 0.84605 0.98934 0.92461 0.92777 0.92721 0.92870 0.91641 0.92038 0.91258 0.91353 0.92045 0.91726 0.91241 0.76128 0.91953 0.91679 0.92342 0.92788 0.92672 0.91731 0.95689 0.91132 0.92759 0.92244 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.98 5.69 -26.73 -0.15 -1.13 16 3 C -0.10 -0.97 4.03 -26.73 -0.11 -1.08 16 4 C -0.11 -1.11 2.72 -91.77 -0.25 -1.36 16 5 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 7 C 0.51 6.84 7.15 -10.99 -0.08 6.76 16 8 O -0.55 -9.23 15.92 5.56 0.09 -9.15 16 9 N -0.72 -9.18 5.22 -60.29 -0.31 -9.50 16 10 C 0.13 1.74 5.07 -4.04 -0.02 1.72 16 11 C -0.12 -1.81 2.38 -90.50 -0.22 -2.03 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.10 -1.50 5.17 -26.69 -0.14 -1.64 16 14 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 15 C 0.12 2.65 4.19 -3.69 -0.02 2.64 16 16 N -0.61 -13.93 2.78 -172.30 -0.48 -14.41 16 17 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 18 H 0.08 2.42 8.05 -52.49 -0.42 1.99 16 19 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 20 N -0.91 -27.48 13.97 55.49 0.78 -26.71 16 21 Si 0.88 22.24 24.35 -169.99 -4.14 18.11 16 22 H -0.29 -7.05 6.70 56.52 0.38 -6.67 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.68 6.45 56.52 0.36 -6.31 16 25 C 0.16 2.92 5.59 -3.71 -0.02 2.90 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 35 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 36 H 0.40 4.62 7.12 -40.82 -0.29 4.33 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.54 6.97 -51.93 -0.36 0.17 16 44 H 0.07 1.66 4.50 -51.93 -0.23 1.43 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -31.57 357.49 -8.09 -39.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.70 Total: 0.68 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.71 Total: -4.08 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.02 Total: -50.61 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.57 -8.09 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.039 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds