Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.52999 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47249 * 305.00232 * 4 3 2 6 6 C 1.53000 * 109.46924 * 64.99922 * 4 3 2 7 7 C 1.50701 * 109.47132 * 184.99745 * 4 3 2 8 8 O 1.21275 * 120.00215 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99764 * 179.97438 * 7 4 3 10 10 C 1.46507 * 120.00083 * 180.02562 * 9 7 4 11 11 C 1.52996 * 109.47100 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.50065 * 304.93284 * 11 10 9 13 13 C 1.53046 * 109.49418 * 184.83967 * 11 10 9 14 14 C 1.53044 * 109.53605 * 178.68770 * 13 11 10 15 15 C 1.53185 * 109.31683 * 61.36105 * 14 13 11 16 16 N 1.46964 * 108.89104 * 305.44666 * 15 14 13 17 17 C 1.36936 * 120.65500 * 233.53702 * 16 15 14 18 18 H 1.08001 * 120.00308 * 152.72311 * 17 16 15 19 19 C 1.38817 * 119.99752 * 332.72717 * 17 16 15 20 20 N 1.31623 * 119.99999 * 159.80555 * 19 17 16 21 21 Si 1.86798 * 119.99981 * 339.80499 * 19 17 16 22 22 H 1.48498 * 109.47064 * 94.88010 * 21 19 17 23 23 H 1.48500 * 109.47025 * 214.88286 * 21 19 17 24 24 H 1.48500 * 109.47233 * 334.87889 * 21 19 17 25 25 C 1.46924 * 118.71348 * 53.34947 * 16 15 14 26 26 H 1.09001 * 109.46957 * 300.00143 * 1 2 3 27 27 H 1.09004 * 109.47141 * 59.99946 * 1 2 3 28 28 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46957 * 239.99857 * 2 1 3 30 30 H 1.09004 * 109.47141 * 120.00054 * 2 1 3 31 31 H 1.09001 * 109.47247 * 60.00034 * 3 2 1 32 32 H 1.09004 * 109.47081 * 300.00091 * 3 2 1 33 33 H 1.08999 * 109.47319 * 60.00441 * 6 4 3 34 34 H 1.08999 * 109.47195 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47097 * 300.00014 * 6 4 3 36 36 H 0.97000 * 120.00361 * 0.02562 * 9 7 4 37 37 H 1.09004 * 109.46630 * 60.00065 * 10 9 7 38 38 H 1.08997 * 109.46721 * 300.00468 * 10 9 7 39 39 H 1.09004 * 109.45955 * 298.70029 * 13 11 10 40 40 H 1.08992 * 109.46093 * 58.67611 * 13 11 10 41 41 H 1.08998 * 109.49612 * 181.31679 * 14 13 11 42 42 H 1.09000 * 109.49050 * 301.40808 * 14 13 11 43 43 H 1.09002 * 109.58680 * 65.15586 * 15 14 13 44 44 H 1.09001 * 109.58739 * 185.57867 * 15 14 13 45 45 H 0.96999 * 119.99839 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58266 * 186.78523 * 25 16 15 47 47 H 1.08998 * 109.58538 * 66.50740 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8330 -1.3083 7 6 4.0724 2.8579 0.1231 8 8 3.2844 3.7761 0.2044 9 7 5.3975 3.1031 0.1446 10 6 5.8860 4.4790 0.2655 11 6 7.4159 4.4789 0.2647 12 1 7.7801 3.8190 1.0520 13 6 7.9268 5.9003 0.5117 14 6 9.4569 5.8958 0.5437 15 6 9.9907 5.4187 -0.8106 16 7 9.3897 4.1153 -1.1264 17 6 10.1780 3.0411 -1.4422 18 1 9.8280 2.0382 -1.2466 19 6 11.4272 3.2411 -2.0137 20 7 12.3367 2.2913 -1.9569 21 14 11.8174 4.8582 -2.8635 22 1 12.4987 5.7678 -1.9077 23 1 12.7067 4.6047 -4.0254 24 1 10.5569 5.4874 -3.3330 25 6 7.9265 3.9859 -1.0928 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7158 1.4226 -2.1499 34 1 5.1694 0.8334 -1.3090 35 1 3.7160 -0.1907 -1.3978 36 1 6.0278 2.3686 0.0800 37 1 5.5227 4.9129 1.1971 38 1 5.5225 5.0688 -0.5761 39 1 7.5824 6.5544 -0.2893 40 1 7.5449 6.2627 1.4661 41 1 9.8196 6.9042 0.7429 42 1 9.8023 5.2228 1.3285 43 1 9.7226 6.1391 -1.5833 44 1 11.0750 5.3190 -0.7614 45 1 13.2094 2.4309 -2.3565 46 1 7.6490 2.9408 -1.2299 47 1 7.4881 4.5878 -1.8887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358192047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -69.542562 kcal Electronic energy + Delta-G solvation = -22911.984939 eV Core-core repulsion = 19707.135233 eV Total energy + Delta-G solvation = -3204.849707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05966 -39.61438 -37.00129 -36.25401 -34.73196 -33.16523 -32.68402 -31.84266 -27.63105 -27.41076 -26.98616 -24.69538 -23.67364 -22.87964 -21.87444 -21.10919 -20.42112 -18.76104 -17.92797 -17.25151 -17.05257 -16.73095 -16.25775 -15.72599 -15.48294 -15.11864 -15.06323 -14.91006 -14.75224 -14.26368 -14.07888 -13.96275 -13.62861 -13.37353 -13.28613 -13.18026 -13.13023 -12.72114 -12.56108 -12.19447 -12.12980 -12.11472 -11.82826 -11.71885 -11.70281 -11.56841 -11.38649 -11.33305 -11.26494 -10.70029 -10.64704 -10.04540 -8.92840 -8.16317 -5.47447 1.29162 1.40865 1.49120 1.66977 2.26660 2.41491 3.05469 3.31554 3.71682 3.83011 3.85718 3.95031 3.99231 4.01919 4.24007 4.32373 4.36194 4.40535 4.43488 4.53269 4.63580 4.64784 4.77831 4.80474 4.83128 4.84630 4.92135 4.96667 4.98371 5.04476 5.07370 5.14156 5.16131 5.24246 5.25982 5.28447 5.32367 5.45416 5.47918 5.53750 5.58110 5.86677 6.12963 6.56762 6.91826 7.26042 7.62837 8.04027 9.03304 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.003563 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.823074 B = 7857.725853 C = 8676.523746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.096 4.096 4 C -0.106 4.106 5 H 0.116 0.884 6 C -0.144 4.144 7 C 0.512 3.488 8 O -0.587 6.587 9 N -0.721 5.721 10 C 0.136 3.864 11 C -0.104 4.104 12 H 0.074 0.926 13 C -0.099 4.099 14 C -0.127 4.127 15 C 0.115 3.885 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.058 0.942 19 C -0.035 4.035 20 N -0.957 5.957 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.314 1.314 24 H -0.262 1.262 25 C 0.154 3.846 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.046 0.954 45 H 0.261 0.739 46 H 0.059 0.941 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 -0.301 5.831 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.127 4.127 5 H 0.134 0.866 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.467 6.467 9 N -0.372 5.372 10 C 0.012 3.988 11 C -0.124 4.124 12 H 0.092 0.908 13 C -0.137 4.137 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.076 0.924 19 C -0.230 4.230 20 N -0.603 5.603 21 Si 0.773 3.227 22 H -0.204 1.204 23 H -0.243 1.243 24 H -0.187 1.187 25 C 0.029 3.971 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -19.266 0.312 5.834 20.132 hybrid contribution 1.160 0.282 -0.705 1.386 sum -18.106 0.594 5.130 18.828 Atomic orbital electron populations 1.21775 0.95626 1.02064 1.01642 1.21588 0.96142 0.95231 1.02990 1.21377 0.92275 0.97732 1.02020 1.21384 0.97744 0.91601 1.01972 0.86581 1.21843 1.01534 1.02135 0.94665 1.21260 0.81891 0.92298 0.74575 1.90653 1.56322 1.48008 1.51741 1.46119 1.07229 1.09959 1.73940 1.21261 0.92793 0.83092 1.01681 1.21729 0.92973 0.98802 0.98878 0.90793 1.21367 0.94595 0.95118 1.02597 1.21905 0.96580 1.01221 0.96881 1.21447 0.96657 0.86795 0.96064 1.44484 1.02169 1.07468 1.80290 1.18895 0.97876 0.87320 1.33260 0.92388 1.25853 0.96735 1.00036 1.00365 1.69952 1.05144 1.36406 1.48819 0.85954 0.77542 0.81159 0.78008 1.20450 1.24313 1.18672 1.21073 0.82101 0.99355 0.94613 0.93061 0.93075 0.91721 0.90796 0.91088 0.92660 0.92822 0.93070 0.91841 0.89252 0.75348 0.91191 0.92299 0.91648 0.89862 0.89998 0.92585 0.95220 0.93613 0.93053 0.92286 0.95665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.65 5.69 30.59 0.17 -1.47 16 3 C -0.10 -1.78 4.03 30.59 0.12 -1.66 16 4 C -0.11 -1.93 2.72 -11.54 -0.03 -1.97 16 5 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.14 -2.36 8.84 71.98 0.64 -1.72 16 7 C 0.51 12.99 7.15 87.66 0.63 13.62 16 8 O -0.59 -19.39 15.92 -3.02 -0.05 -19.44 16 9 N -0.72 -17.12 5.22 -463.06 -2.42 -19.54 16 10 C 0.14 3.43 5.07 86.38 0.44 3.87 16 11 C -0.10 -2.90 2.38 -10.72 -0.03 -2.93 16 12 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.10 -2.59 5.17 30.62 0.16 -2.43 16 14 C -0.13 -3.98 6.08 30.67 0.19 -3.79 16 15 C 0.12 4.72 4.19 86.35 0.36 5.08 16 16 N -0.62 -27.96 2.78 -699.02 -1.94 -29.91 16 17 C -0.24 -13.39 10.04 84.03 0.84 -12.55 16 18 H 0.06 3.42 8.05 -2.91 -0.02 3.40 16 19 C -0.04 -2.03 5.24 84.86 0.44 -1.59 16 20 N -0.96 -59.38 13.97 21.65 0.30 -59.08 16 21 Si 0.94 46.39 24.35 68.60 1.67 48.06 16 22 H -0.28 -12.96 6.70 99.48 0.67 -12.30 16 23 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 24 H -0.26 -12.37 6.45 99.48 0.64 -11.73 16 25 C 0.15 5.48 5.59 86.36 0.48 5.96 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.88 6.56 -2.39 -0.02 0.87 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.05 7.56 -2.39 -0.02 1.04 16 35 H 0.09 1.12 6.56 -2.39 -0.02 1.10 16 36 H 0.41 8.73 7.12 -92.71 -0.66 8.07 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.03 1.20 6.97 -2.39 -0.02 1.18 16 44 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 45 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.06 2.07 7.13 -2.39 -0.02 2.06 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.87 357.49 2.85 -66.01 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.16 Total: 16.74 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.13 Total: -2.85 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -4.06 Total: -108.52 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal Total: -68.87 2.85 -66.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.529 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds