Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 C 1.53003 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47286 * 55.00041 * 4 3 2 6 6 C 1.52999 * 109.46864 * 294.99857 * 4 3 2 7 7 C 1.50697 * 109.47099 * 174.99860 * 4 3 2 8 8 O 1.21285 * 120.00283 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00035 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99809 * 179.97438 * 9 7 4 11 11 C 1.53003 * 109.46873 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.49851 * 54.93688 * 11 10 9 13 13 C 1.53045 * 109.49823 * 175.00171 * 11 10 9 14 14 C 1.53039 * 109.53935 * 181.31262 * 13 11 10 15 15 C 1.53194 * 109.31437 * 298.64063 * 14 13 11 16 16 N 1.46920 * 108.77770 * 54.62964 * 15 14 13 17 17 C 1.36942 * 120.62949 * 126.41837 * 16 15 14 18 18 H 1.07996 * 119.99726 * 207.67826 * 17 16 15 19 19 C 1.38813 * 119.99776 * 27.67245 * 17 16 15 20 20 N 1.31610 * 120.00335 * 17.35736 * 19 17 16 21 21 Si 1.86800 * 119.99647 * 197.35824 * 19 17 16 22 22 H 1.48504 * 109.47023 * 90.00127 * 21 19 17 23 23 H 1.48500 * 109.46944 * 209.99941 * 21 19 17 24 24 H 1.48500 * 109.47434 * 330.00320 * 21 19 17 25 25 C 1.46930 * 118.74022 * 306.39493 * 16 15 14 26 26 H 1.09002 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47207 * 300.00154 * 1 2 3 28 28 H 1.09001 * 109.47208 * 59.99730 * 1 2 3 29 29 H 1.09001 * 109.47208 * 120.00270 * 2 1 3 30 30 H 1.09004 * 109.46515 * 240.00059 * 2 1 3 31 31 H 1.09003 * 109.47067 * 299.99730 * 3 2 1 32 32 H 1.08991 * 109.47182 * 59.99943 * 3 2 1 33 33 H 1.08995 * 109.47167 * 60.00532 * 6 4 3 34 34 H 1.09007 * 109.46566 * 179.97438 * 6 4 3 35 35 H 1.08994 * 109.47377 * 300.00050 * 6 4 3 36 36 H 0.97002 * 119.99859 * 0.02562 * 9 7 4 37 37 H 1.08996 * 109.47750 * 300.00073 * 10 9 7 38 38 H 1.09004 * 109.47007 * 60.00478 * 10 9 7 39 39 H 1.08995 * 109.45924 * 301.33815 * 13 11 10 40 40 H 1.09004 * 109.45818 * 61.31051 * 13 11 10 41 41 H 1.09004 * 109.49288 * 58.58280 * 14 13 11 42 42 H 1.08995 * 109.49795 * 178.65247 * 14 13 11 43 43 H 1.09002 * 109.58773 * 174.42404 * 15 14 13 44 44 H 1.09004 * 109.58222 * 294.84331 * 15 14 13 45 45 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58218 * 293.81850 * 25 16 15 47 47 H 1.08994 * 109.58441 * 173.39942 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8326 1.3064 7 6 4.0723 2.8578 -0.1245 8 8 3.2842 3.7762 -0.2039 9 7 5.3974 3.1031 -0.1460 10 6 5.8857 4.4791 -0.2670 11 6 7.4157 4.4790 -0.2675 12 1 7.7793 3.8174 -1.0538 13 6 7.9265 5.8997 -0.5186 14 6 9.4565 5.8951 -0.5519 15 6 9.9914 5.4214 0.8033 16 7 9.3908 4.1184 1.1194 17 6 10.1798 3.0446 1.4353 18 1 9.8329 2.0419 1.2340 19 6 11.4255 3.2451 2.0140 20 7 11.7145 4.4028 2.5694 21 14 12.6917 1.8718 2.0044 22 1 13.5216 1.9722 0.7770 23 1 13.5620 1.9926 3.2016 24 1 11.9982 0.5589 2.0269 25 6 7.9274 3.9894 1.0909 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.7172 -0.1911 1.3960 34 1 5.1706 0.8322 1.3057 35 1 3.7175 1.4219 2.1484 36 1 6.0278 2.3686 -0.0821 37 1 5.5225 4.9130 -1.1985 38 1 5.5223 5.0689 0.5746 39 1 7.5435 6.2598 -1.4734 40 1 7.5829 6.5558 0.2812 41 1 9.8013 5.2200 -1.3351 42 1 9.8190 6.9029 -0.7545 43 1 11.0757 5.3216 0.7535 44 1 9.7239 6.1438 1.5744 45 1 12.5849 4.5428 2.9742 46 1 7.4917 4.5950 1.8855 47 1 7.6500 2.9447 1.2309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358192051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -55.585695 kcal Electronic energy + Delta-G solvation = -22846.805258 eV Core-core repulsion = 19642.560766 eV Total energy + Delta-G solvation = -3204.244492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92973 -37.89335 -36.10312 -34.77502 -33.08438 -32.13171 -30.46526 -30.18301 -26.78412 -25.77297 -25.28715 -23.63256 -22.11943 -21.26509 -20.80559 -19.83467 -18.96858 -17.06367 -16.55387 -15.91695 -15.74165 -15.08024 -14.86075 -14.35461 -14.12114 -14.02875 -13.63034 -13.42967 -13.26532 -12.80546 -12.70361 -12.40029 -12.35454 -12.20789 -12.13177 -12.00131 -11.39306 -11.30510 -11.13673 -11.04292 -10.96061 -10.73764 -10.68970 -10.50034 -10.23613 -10.19135 -9.95668 -9.75042 -9.47134 -9.43802 -8.87531 -8.48893 -6.70443 -5.81472 -3.24301 2.75372 3.32617 3.35114 3.41974 3.43162 4.45598 4.58250 4.62345 4.74031 4.99299 5.05285 5.11495 5.13791 5.28590 5.37791 5.43281 5.46289 5.49746 5.59664 5.61462 5.68650 5.70238 5.79543 5.82955 5.93746 5.94999 5.98117 6.01279 6.16296 6.22590 6.23390 6.32744 6.36883 6.55253 6.57912 6.69630 6.76802 6.84784 6.95253 7.38227 7.64113 7.65959 7.75975 8.34556 8.41748 9.18127 9.81768 10.38591 11.26762 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003611 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.223186 B = 7752.043315 C = 8892.918453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.147 4.147 7 C 0.514 3.486 8 O -0.549 6.549 9 N -0.723 5.723 10 C 0.127 3.873 11 C -0.117 4.117 12 H 0.072 0.928 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.155 3.845 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.328 -5.765 -6.168 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.426 6.426 9 N -0.375 5.375 10 C 0.003 3.997 11 C -0.138 4.138 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.028 3.972 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.715 -5.053 -6.111 17.603 hybrid contribution 1.114 -0.939 0.048 1.458 sum -14.602 -5.992 -6.063 16.908 Atomic orbital electron populations 1.21761 0.95876 1.01383 1.01940 1.21607 0.95913 0.96780 1.02093 1.21419 0.92405 0.96485 1.03454 1.21344 0.97721 0.93632 1.00609 0.88691 1.21842 1.01590 1.01218 0.95794 1.20660 0.82288 0.91262 0.75786 1.90673 1.55460 1.46545 1.49971 1.46118 1.06975 1.10103 1.74279 1.21446 0.94520 0.82345 1.01415 1.21952 0.91769 0.98534 1.01559 0.90932 1.21343 0.97026 0.95291 1.00128 1.22172 0.94509 0.99694 1.01714 1.20805 0.99319 0.85713 0.89872 1.44049 0.99171 1.08595 1.79584 1.19170 0.98254 0.86836 1.34106 0.91717 1.25037 0.99915 0.97022 0.97644 1.70037 1.21881 1.23827 1.38813 0.86296 0.81691 0.81663 0.77133 1.21451 1.21773 1.20440 1.20885 0.86180 0.98002 0.92122 0.92891 0.92711 0.92763 0.91665 0.92074 0.91254 0.91320 0.91304 0.91790 0.91998 0.76257 0.92133 0.91701 0.93468 0.92498 0.92777 0.93183 0.89524 0.96460 0.93603 0.96399 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.10 -1.00 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.14 2.72 -91.77 -0.25 -1.39 16 5 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 7 C 0.51 7.08 7.15 -10.99 -0.08 7.00 16 8 O -0.55 -9.54 15.92 5.55 0.09 -9.45 16 9 N -0.72 -9.64 5.22 -60.29 -0.31 -9.95 16 10 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 11 C -0.12 -1.92 2.37 -90.50 -0.21 -2.14 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 14 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 15 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 16 N -0.59 -14.40 3.00 -172.32 -0.52 -14.92 16 17 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 18 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 21 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.06 0.59 7.56 -51.92 -0.39 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 4.81 7.12 -40.82 -0.29 4.52 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.50 364.11 -9.14 -39.63 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.78 Total: 1.44 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.70 Total: -3.23 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.21 Total: -50.13 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.50 -9.14 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.952 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds