Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47034 * 2 1 4 4 C 1.53003 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46828 * 55.00488 * 4 3 2 6 6 C 1.53001 * 109.47236 * 295.00541 * 4 3 2 7 7 C 1.50694 * 109.47032 * 175.00009 * 4 3 2 8 8 O 1.21291 * 120.00068 * 0.02562 * 7 4 3 9 9 N 1.34775 * 120.00083 * 179.97438 * 7 4 3 10 10 C 1.46497 * 120.00076 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.47334 * 180.02562 * 10 9 7 12 12 H 1.09010 * 109.49454 * 304.93443 * 11 10 9 13 13 C 1.53042 * 109.50255 * 184.83784 * 11 10 9 14 14 C 1.53031 * 109.53811 * 178.67995 * 13 11 10 15 15 C 1.53194 * 109.31629 * 61.36657 * 14 13 11 16 16 N 1.46966 * 108.88487 * 305.44234 * 15 14 13 17 17 C 1.36933 * 120.64901 * 233.53211 * 16 15 14 18 18 H 1.08000 * 119.99448 * 151.72846 * 17 16 15 19 19 C 1.38810 * 120.00381 * 331.73251 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17487 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17654 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46927 * 118.71325 * 53.35385 * 16 15 14 26 26 H 1.09007 * 109.47025 * 299.99986 * 1 2 3 27 27 H 1.09000 * 109.47193 * 59.99629 * 1 2 3 28 28 H 1.08992 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46730 * 240.00550 * 2 1 3 30 30 H 1.09000 * 109.47193 * 120.00371 * 2 1 3 31 31 H 1.09005 * 109.46719 * 60.00314 * 3 2 1 32 32 H 1.09000 * 109.47434 * 300.00224 * 3 2 1 33 33 H 1.09007 * 109.46618 * 299.99745 * 6 4 3 34 34 H 1.08993 * 109.47158 * 59.99322 * 6 4 3 35 35 H 1.08999 * 109.46876 * 180.02562 * 6 4 3 36 36 H 0.96997 * 119.99957 * 0.02562 * 9 7 4 37 37 H 1.09000 * 109.47669 * 60.00187 * 10 9 7 38 38 H 1.09006 * 109.47473 * 299.99824 * 10 9 7 39 39 H 1.09003 * 109.45784 * 298.70595 * 13 11 10 40 40 H 1.09004 * 109.45408 * 58.67123 * 13 11 10 41 41 H 1.09007 * 109.49590 * 181.31562 * 14 13 11 42 42 H 1.09002 * 109.50301 * 301.40979 * 14 13 11 43 43 H 1.09000 * 109.58308 * 65.14935 * 15 14 13 44 44 H 1.08995 * 109.58657 * 185.57477 * 15 14 13 45 45 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.57865 * 186.78094 * 25 16 15 47 47 H 1.08998 * 109.58747 * 66.50206 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0806 0.8326 1.3063 7 6 4.0723 2.8579 -0.1245 8 8 3.2841 3.7764 -0.2039 9 7 5.3973 3.1034 -0.1459 10 6 5.8856 4.4794 -0.2658 11 6 7.4156 4.4794 -0.2665 12 1 7.7798 3.9661 0.6235 13 6 7.9264 5.9221 -0.2700 14 6 9.4564 5.9233 -0.2376 15 6 9.9903 5.2183 -1.4885 16 7 9.3895 3.8798 -1.5732 17 6 10.1780 2.7673 -1.6977 18 1 9.8348 1.8168 -1.3164 19 6 11.4184 2.8610 -2.3138 20 7 11.7041 3.9052 -3.0623 21 14 12.6819 1.5052 -2.0805 22 1 12.1193 0.4502 -1.1996 23 1 13.0265 0.9172 -3.3999 24 1 13.9049 2.0703 -1.4559 25 6 7.9263 3.7581 -1.5177 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.7176 1.4220 2.1484 34 1 3.7173 -0.1911 1.3959 35 1 5.1706 0.8331 1.3060 36 1 6.0277 2.3689 -0.0821 37 1 5.5224 5.0685 0.5763 38 1 5.5222 4.9141 -1.1970 39 1 7.5818 6.4271 -1.1724 40 1 7.5443 6.4446 0.6070 41 1 9.8190 6.9511 -0.2165 42 1 9.8019 5.3968 0.6521 43 1 9.7222 5.7937 -2.3746 44 1 11.0746 5.1288 -1.4227 45 1 12.5707 3.9705 -3.4932 46 1 7.6489 2.7050 -1.4713 47 1 7.4879 4.2127 -2.4061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358192054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = -55.785649 kcal Electronic energy + Delta-G solvation = -22807.050491 eV Core-core repulsion = 19602.797328 eV Total energy + Delta-G solvation = -3204.253162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.93161 -37.89158 -36.10628 -34.77382 -33.08529 -32.14425 -30.46283 -30.18444 -26.80653 -25.78921 -25.28537 -23.63184 -22.12414 -21.26596 -20.81231 -19.82059 -18.99381 -17.02608 -16.58294 -15.93482 -15.72348 -15.13348 -14.83042 -14.41117 -14.09989 -13.88656 -13.76707 -13.44817 -13.24404 -12.80282 -12.71813 -12.43737 -12.35938 -12.19575 -12.16874 -12.00831 -11.40200 -11.30526 -11.13607 -11.04948 -10.97263 -10.73857 -10.69400 -10.49601 -10.22943 -10.19322 -9.95593 -9.75373 -9.47755 -9.43350 -8.87541 -8.49543 -6.69387 -5.81631 -3.24790 2.75457 3.32254 3.34262 3.42208 3.43916 4.45488 4.57302 4.61807 4.73058 4.97870 5.04666 5.10690 5.13145 5.29003 5.36236 5.43170 5.46214 5.47536 5.59493 5.61107 5.64957 5.69188 5.78566 5.82678 5.89520 5.94789 5.97314 6.01235 6.14123 6.22346 6.23201 6.32526 6.36751 6.55224 6.57848 6.69525 6.76732 6.84645 6.95388 7.38180 7.64102 7.65917 7.76121 8.34476 8.41935 9.18150 9.81670 10.38819 11.26760 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.003562 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.588758 B = 7858.797068 C = 8900.183682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.514 3.486 8 O -0.549 6.549 9 N -0.723 5.723 10 C 0.127 3.873 11 C -0.117 4.117 12 H 0.072 0.928 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.155 3.845 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.253 0.747 46 H 0.049 0.951 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.525 7.881 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.426 6.426 9 N -0.375 5.375 10 C 0.003 3.997 11 C -0.138 4.138 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.028 3.972 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -15.701 -3.833 7.714 17.909 hybrid contribution 1.116 -0.938 0.033 1.458 sum -14.585 -4.771 7.747 17.190 Atomic orbital electron populations 1.21761 0.95871 1.01391 1.01936 1.21610 0.95920 0.96772 1.02107 1.21419 0.92376 0.96496 1.03451 1.21350 0.97753 0.93711 1.00617 0.88465 1.21829 1.01385 1.01256 0.95825 1.20649 0.82289 0.91240 0.75796 1.90675 1.55453 1.46544 1.49977 1.46114 1.06974 1.10116 1.74260 1.21444 0.94513 0.82248 1.01515 1.21946 0.91780 0.98318 1.01755 0.90936 1.21341 0.97018 0.94867 1.00556 1.22170 0.94516 0.99603 1.01798 1.20804 0.99258 0.84171 0.91450 1.44043 0.99167 1.03297 1.84899 1.19192 0.98624 0.89129 1.31364 0.91733 1.25053 0.99977 0.97712 0.96887 1.70048 1.22123 1.30400 1.31977 0.86239 0.81699 0.81456 0.77450 1.20262 1.21721 1.21564 1.20883 0.86203 0.97163 0.92970 0.92772 0.92704 0.92884 0.91966 0.91753 0.91419 0.91151 0.92181 0.91269 0.91967 0.76255 0.92120 0.91705 0.92486 0.93467 0.93170 0.92775 0.96443 0.89592 0.93663 0.93223 0.96409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.15 16 3 C -0.10 -0.99 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.15 2.72 -91.77 -0.25 -1.40 16 5 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.15 -1.23 8.85 37.16 0.33 -0.91 16 7 C 0.51 7.08 7.15 -10.99 -0.08 7.00 16 8 O -0.55 -9.54 15.92 5.55 0.09 -9.45 16 9 N -0.72 -9.64 5.22 -60.29 -0.31 -9.95 16 10 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 11 C -0.12 -1.92 2.38 -90.50 -0.22 -2.13 16 12 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 3.97 5.30 -3.69 -0.02 3.95 16 16 N -0.59 -14.43 3.00 -172.29 -0.52 -14.94 16 17 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 18 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16 21 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 35 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 36 H 0.40 4.81 7.11 -40.82 -0.29 4.52 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 0.95 7.13 -51.93 -0.37 0.58 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -30.58 364.13 -9.14 -39.72 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.78 Total: 1.28 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.70 Total: -3.10 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.21 Total: -50.19 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.58 -9.14 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358192054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.066 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds