Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00035 * 2 1 4 4 C 1.53005 * 109.47167 * 93.50857 * 3 2 1 5 5 C 1.50696 * 119.99838 * 180.02562 * 2 1 3 6 6 N 1.46898 * 109.47225 * 93.51423 * 5 2 1 7 7 C 1.46903 * 110.99532 * 302.41793 * 6 5 2 8 8 C 1.50693 * 109.47375 * 294.54312 * 7 6 5 9 9 H 1.07998 * 120.00146 * 4.37841 * 8 7 6 10 10 C 1.37882 * 120.00290 * 184.36723 * 8 7 6 11 11 N 1.31520 * 119.99605 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00414 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47442 * 90.00151 * 12 10 8 14 14 H 1.48496 * 109.47191 * 210.00555 * 12 10 8 15 15 H 1.48499 * 109.47067 * 330.00409 * 12 10 8 16 16 C 1.46894 * 111.00173 * 66.37161 * 6 5 2 17 17 C 1.53007 * 109.46953 * 64.04724 * 16 6 5 18 18 N 1.46902 * 109.47155 * 180.02562 * 17 16 6 19 19 C 1.47016 * 110.99562 * 46.31416 * 18 17 16 20 20 C 1.53104 * 109.25081 * 182.35153 * 19 18 17 21 21 O 1.43011 * 109.29623 * 303.21716 * 20 19 18 22 22 C 1.43016 * 113.73663 * 58.65040 * 21 20 19 23 23 C 1.47009 * 110.99961 * 169.99826 * 18 17 16 24 24 H 1.08001 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00133 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47285 * 213.50879 * 3 2 1 27 27 H 1.09000 * 109.47218 * 333.51271 * 3 2 1 28 28 H 1.09000 * 109.47036 * 300.00174 * 4 3 2 29 29 H 1.09002 * 109.47176 * 59.99866 * 4 3 2 30 30 H 1.09001 * 109.47075 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46966 * 333.50736 * 5 2 1 32 32 H 1.09004 * 109.46655 * 213.51087 * 5 2 1 33 33 H 1.08999 * 109.46946 * 54.55281 * 7 6 5 34 34 H 1.09003 * 109.46859 * 174.54449 * 7 6 5 35 35 H 0.97000 * 119.99603 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47466 * 304.04450 * 16 6 5 37 37 H 1.09000 * 109.46860 * 184.03896 * 16 6 5 38 38 H 1.08999 * 109.47258 * 59.99599 * 17 16 6 39 39 H 1.09009 * 109.46641 * 299.99369 * 17 16 6 40 40 H 1.08993 * 109.47238 * 62.44297 * 19 18 17 41 41 H 1.08999 * 109.54917 * 302.30660 * 19 18 17 42 42 H 1.09005 * 109.50474 * 183.25972 * 20 19 18 43 43 H 1.08997 * 109.50545 * 63.17952 * 20 19 18 44 44 H 1.08998 * 109.51214 * 61.26098 * 22 21 20 45 45 H 1.09002 * 109.50643 * 181.35459 * 22 21 20 46 46 H 1.08995 * 109.50987 * 57.67081 * 23 18 17 47 47 H 1.09004 * 109.50654 * 297.54186 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.3950 1.7026 1.4398 5 6 2.0635 -1.3051 -0.0006 6 7 2.3818 -1.6861 -1.3831 7 6 1.1615 -1.7924 -2.1941 8 6 0.3152 -2.9290 -1.6815 9 1 0.6149 -3.4686 -0.7953 10 6 -0.8421 -3.2800 -2.3439 11 7 -1.2070 -2.6231 -3.4233 12 14 -1.8916 -4.6885 -1.7082 13 1 -2.8954 -4.1637 -0.7479 14 1 -2.5886 -5.3394 -2.8465 15 1 -1.0252 -5.6821 -1.0248 16 6 3.3326 -0.7412 -1.9840 17 6 4.6615 -0.8051 -1.2283 18 7 5.6122 0.1403 -1.8288 19 6 4.9800 1.4471 -2.0609 20 6 5.9857 2.3810 -2.7395 21 8 7.1586 2.4825 -1.9277 22 6 7.7998 1.2278 -1.6830 23 6 6.8129 0.2825 -0.9927 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 2.9873 1.1913 -0.5673 27 1 1.4486 2.0796 -0.4583 28 1 1.4712 1.8164 2.0072 29 1 3.0098 0.9281 1.8983 30 1 2.9396 2.6468 1.4398 31 1 1.4486 -2.0798 0.4575 32 1 2.9872 -1.1915 0.5669 33 1 0.5987 -0.8613 -2.1273 34 1 1.4312 -1.9802 -3.2334 35 1 -2.0213 -2.8698 -3.8890 36 1 2.9283 0.2692 -1.9233 37 1 3.4958 -1.0052 -3.0289 38 1 5.0658 -1.8155 -1.2891 39 1 4.4983 -0.5412 -0.1834 40 1 4.6712 1.8758 -1.1075 41 1 4.1086 1.3218 -2.7036 42 1 5.5406 3.3686 -2.8612 43 1 6.2531 1.9794 -3.7169 44 1 8.1199 0.7919 -2.6293 45 1 8.6673 1.3814 -1.0411 46 1 7.2788 -0.6933 -0.8557 47 1 6.5341 0.6928 -0.0221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358502096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = -13.900906 kcal Electronic energy + Delta-G solvation = -23907.754736 eV Core-core repulsion = 20705.317832 eV Total energy + Delta-G solvation = -3202.436904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76931 -38.19959 -35.77469 -34.18166 -32.50233 -31.38815 -30.31667 -29.16112 -27.16009 -26.25289 -24.46742 -24.14146 -23.26557 -21.68787 -20.53729 -19.98265 -17.66665 -16.73370 -16.20624 -16.16288 -15.47602 -15.20555 -15.08974 -15.00832 -14.57601 -14.21969 -14.10627 -13.92633 -13.08670 -12.91707 -12.79949 -12.54065 -12.31624 -12.02531 -11.86790 -11.75305 -11.48927 -11.28319 -10.99933 -10.89683 -10.77767 -10.74090 -10.55840 -10.42862 -10.31845 -10.16039 -9.85734 -9.71245 -9.18598 -8.47149 -8.30902 -8.29631 -7.17886 -6.00856 -4.01100 2.90550 3.31162 3.38296 3.42117 3.67928 3.84380 4.43938 4.77831 4.90864 4.97783 5.04424 5.14658 5.17716 5.21594 5.26986 5.35925 5.43264 5.45195 5.51602 5.57580 5.61111 5.69370 5.70577 5.74606 5.86944 5.88891 5.96541 6.05850 6.12541 6.21530 6.32616 6.35139 6.47475 6.65152 6.71206 6.94764 7.03022 7.06043 7.28529 7.34690 7.42979 7.58252 7.81745 8.10822 8.23326 8.57307 9.05643 9.62064 11.09954 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.004398 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.577323 B = 6364.385465 C = 6913.068747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.169 4.169 3 C -0.097 4.097 4 C -0.141 4.141 5 C 0.099 3.901 6 N -0.525 5.525 7 C 0.188 3.812 8 C -0.501 4.501 9 H 0.060 0.940 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.045 3.955 17 C 0.059 3.941 18 N -0.535 5.535 19 C 0.009 3.991 20 C 0.063 3.937 21 O -0.389 6.389 22 C 0.064 3.936 23 C 0.019 3.981 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.003 0.997 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 9.437 5.464 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.199 4.199 5 C -0.029 4.029 6 N -0.248 5.248 7 C 0.063 3.937 8 C -0.539 4.539 9 H 0.078 0.922 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.084 4.084 17 C -0.068 4.068 18 N -0.261 5.261 19 C -0.119 4.119 20 C -0.014 4.014 21 O -0.308 6.308 22 C -0.013 4.013 23 C -0.110 4.110 24 H 0.098 0.902 25 H 0.131 0.869 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.021 0.979 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.547 8.931 4.933 16.960 hybrid contribution -1.565 0.071 0.831 1.773 sum 11.983 9.003 5.764 16.058 Atomic orbital electron populations 1.23829 0.95477 1.01741 0.98557 1.22285 0.96037 0.96166 1.02619 1.20895 1.00290 0.95319 0.96920 1.21697 1.01210 1.00262 0.96690 1.21137 0.97454 0.92429 0.91905 1.62476 1.15696 1.44640 1.01943 1.19817 0.84747 0.96571 0.92531 1.21095 1.05749 1.15652 1.11448 0.92166 1.24940 0.97759 0.96709 0.94994 1.69960 1.24329 1.40988 1.18390 0.86589 0.80426 0.82623 0.78338 1.20828 1.21332 1.19844 1.22285 0.91679 0.95516 0.98897 1.22221 0.92218 0.96332 0.96035 1.62232 1.06956 1.09386 1.47509 1.22963 0.98317 0.89811 1.00769 1.22697 0.85295 0.99649 0.93723 1.87955 1.41379 1.29774 1.71643 1.22647 0.94511 0.84050 1.00051 1.22757 0.92546 1.00588 0.95085 0.90189 0.86900 0.91017 0.92392 0.92832 0.92957 0.93345 0.89926 0.92717 0.97893 0.95406 0.93039 0.94456 0.90973 0.89872 0.94682 0.93814 0.88834 0.88649 0.92241 0.92304 0.88746 0.89664 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 12.13 29.01 0.35 -2.63 16 2 C -0.17 -3.00 3.42 -101.07 -0.35 -3.34 16 3 C -0.10 -1.44 5.52 -27.88 -0.15 -1.60 16 4 C -0.14 -1.79 9.90 37.16 0.37 -1.42 16 5 C 0.10 1.85 5.14 -4.98 -0.03 1.83 16 6 N -0.52 -10.91 4.72 -237.52 -1.12 -12.03 16 7 C 0.19 4.74 4.25 -4.98 -0.02 4.72 16 8 C -0.50 -13.56 7.94 -34.44 -0.27 -13.84 16 9 H 0.06 1.63 6.89 -52.49 -0.36 1.27 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 12 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.04 0.79 3.71 -3.82 -0.01 0.77 16 17 C 0.06 0.88 4.78 -3.82 -0.02 0.86 16 18 N -0.54 -7.04 4.87 -234.30 -1.14 -8.18 16 19 C 0.01 0.12 4.36 -3.71 -0.02 0.10 16 20 C 0.06 0.70 7.01 37.21 0.26 0.96 16 21 O -0.39 -4.72 10.83 -35.23 -0.38 -5.10 16 22 C 0.06 0.65 7.01 37.21 0.26 0.91 16 23 C 0.02 0.21 5.63 -3.71 -0.02 0.19 16 24 H 0.08 1.38 8.01 -52.49 -0.42 0.96 16 25 H 0.11 2.43 7.32 -52.49 -0.38 2.04 16 26 H 0.07 1.05 2.86 -51.93 -0.15 0.90 16 27 H 0.06 0.85 8.01 -51.93 -0.42 0.44 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.70 6.67 -51.93 -0.35 1.35 16 32 H 0.05 0.92 6.12 -51.93 -0.32 0.60 16 33 H 0.00 0.09 5.83 -51.93 -0.30 -0.21 16 34 H 0.03 0.78 7.97 -51.93 -0.41 0.36 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.04 0.65 3.33 -51.93 -0.17 0.48 16 37 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.52 6.16 -51.92 -0.32 0.20 16 40 H 0.04 0.57 6.74 -51.93 -0.35 0.22 16 41 H 0.09 1.23 6.05 -51.93 -0.31 0.92 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -29.07 350.47 -9.44 -38.51 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.05 Total: 1.65 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 0.25 Total: -11.00 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.53 Total: -45.68 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.07 -9.44 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358502096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.605 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds