Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47271 * 2 1 4 4 C 1.53001 * 109.46949 * 119.99782 * 2 1 3 5 5 H 1.09004 * 112.78055 * 189.41044 * 4 2 1 6 6 C 1.53497 * 113.46900 * 320.19316 * 4 2 1 7 7 C 1.53242 * 83.43165 * 140.67919 * 6 4 2 8 8 N 1.47066 * 88.08075 * 334.10466 * 7 6 4 9 9 C 1.34782 * 136.05813 * 207.20195 * 8 7 6 10 10 O 1.21579 * 120.00012 * 174.55618 * 9 8 7 11 11 N 1.34779 * 119.99763 * 354.55818 * 9 8 7 12 12 C 1.46495 * 120.00251 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47682 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46816 * 60.00120 * 13 12 11 15 15 C 1.53004 * 109.46929 * 300.00391 * 13 12 11 16 16 C 1.52998 * 109.47451 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47141 * 179.97438 * 16 13 12 18 18 H 1.08002 * 119.99845 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00246 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99664 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47126 * 59.99942 * 21 19 17 23 23 H 1.48502 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46794 * 299.99894 * 21 19 17 25 25 H 1.08997 * 109.47132 * 306.98211 * 1 2 3 26 26 H 1.09000 * 109.47197 * 66.98493 * 1 2 3 27 27 H 1.09005 * 109.47348 * 186.98295 * 1 2 3 28 28 H 1.08998 * 109.47163 * 239.99214 * 2 1 3 29 29 H 1.09001 * 109.47138 * 299.99305 * 3 2 1 30 30 H 1.08992 * 109.47236 * 59.99610 * 3 2 1 31 31 H 1.09005 * 109.47232 * 179.97438 * 3 2 1 32 32 H 1.09001 * 114.20583 * 254.43823 * 6 4 2 33 33 H 1.09000 * 114.20481 * 27.26423 * 6 4 2 34 34 H 1.09003 * 113.38302 * 219.29379 * 7 6 4 35 35 H 1.08995 * 113.47034 * 88.92852 * 7 6 4 36 36 H 0.97005 * 119.99767 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.46724 * 60.00249 * 12 11 9 38 38 H 1.08999 * 109.47273 * 300.00775 * 12 11 9 39 39 H 1.09001 * 109.46746 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47209 * 300.00242 * 14 13 12 41 41 H 1.09003 * 109.47171 * 60.00247 * 14 13 12 42 42 H 1.08998 * 109.47227 * 299.99566 * 15 13 12 43 43 H 1.09004 * 109.47199 * 59.99694 * 15 13 12 44 44 H 1.09005 * 109.46747 * 179.97438 * 15 13 12 45 45 H 1.08998 * 109.47025 * 60.00238 * 16 13 12 46 46 H 1.08994 * 109.47030 * 299.99936 * 16 13 12 47 47 H 0.97001 * 120.00424 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1154 -0.6126 1.3899 6 6 1.2239 -0.4090 2.5113 7 6 1.4346 -1.8986 2.8029 8 7 1.5730 -2.1119 1.3544 9 6 1.3601 -3.1313 0.4988 10 8 1.4841 -2.9565 -0.6979 11 7 1.0096 -4.3444 0.9700 12 6 0.7776 -5.4524 0.0402 13 6 0.3950 -6.7074 0.8273 14 6 -0.8807 -6.4379 1.6280 15 6 1.5303 -7.0745 1.7850 16 6 0.1533 -7.8646 -0.1439 17 6 -0.2229 -9.1008 0.6315 18 1 -0.2840 -9.0646 1.7092 19 6 -0.4892 -10.2782 -0.0348 20 7 -0.4153 -10.3222 -1.3471 21 14 -0.9562 -11.8103 0.9262 22 1 -2.1950 -11.5494 1.7024 23 1 -1.1907 -12.9337 -0.0164 24 1 0.1452 -12.1659 1.8567 25 1 -0.3633 0.6182 0.8209 26 1 -0.3633 0.4018 -0.9459 27 1 -0.3634 -1.0201 0.1249 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.7228 0.2607 3.2118 33 1 0.1863 -0.1374 2.3168 34 1 0.5575 -2.3838 3.2313 35 1 2.3471 -2.1067 3.3615 36 1 0.9103 -4.4837 1.9249 37 1 1.6863 -5.6440 -0.5306 38 1 -0.0314 -5.1910 -0.6419 39 1 -1.1530 -7.3319 2.1891 40 1 -0.7081 -5.6135 2.3199 41 1 -1.6895 -6.1763 0.9456 42 1 2.4391 -7.2664 1.2146 43 1 1.7029 -6.2501 2.4769 44 1 1.2575 -7.9684 2.3461 45 1 1.0623 -8.0564 -0.7140 46 1 -0.6553 -7.6033 -0.8264 47 1 -0.6023 -11.1505 -1.8160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358685875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = -16.195314 kcal Electronic energy + Delta-G solvation = -23182.545002 eV Core-core repulsion = 19980.008605 eV Total energy + Delta-G solvation = -3202.536397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.82391 -38.59509 -36.81661 -34.61855 -33.38318 -32.02834 -29.56199 -27.31873 -27.06263 -26.49056 -26.24677 -25.49672 -23.07411 -22.18922 -20.65463 -19.32025 -18.13641 -17.34510 -16.36787 -16.25863 -16.01198 -15.02836 -14.65032 -14.47902 -14.26909 -13.82730 -13.63041 -13.32562 -12.98869 -12.94467 -12.70979 -12.53168 -12.44879 -12.09688 -12.03918 -11.74067 -11.56215 -11.15297 -11.07934 -10.98901 -10.95416 -10.85962 -10.61220 -10.42152 -10.34684 -10.24608 -9.85012 -9.76834 -9.17608 -8.91974 -8.85873 -8.38683 -8.34247 -5.98375 -3.99752 2.59434 3.32683 3.38094 3.39235 3.45711 4.03532 4.22510 4.46531 4.65346 4.80314 4.81376 4.95742 5.04334 5.25062 5.27533 5.36946 5.41989 5.44043 5.52315 5.55226 5.66709 5.68137 5.75838 5.77863 5.78455 5.98745 6.02927 6.20292 6.24912 6.27601 6.30182 6.35402 6.44198 6.63761 6.64769 6.86198 7.08717 7.09347 7.16503 7.40218 7.66040 7.78850 8.00284 8.26179 8.42322 8.87928 9.04842 9.63116 11.13107 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038722 B = 0.003207 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.936032 B = 8728.192391 C = 9041.102100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.142 4.142 4 C 0.159 3.841 5 H 0.086 0.914 6 C -0.157 4.157 7 C 0.098 3.902 8 N -0.666 5.666 9 C 0.730 3.270 10 O -0.588 6.588 11 N -0.735 5.735 12 C 0.148 3.852 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 21.570 9.796 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.200 4.200 4 C 0.055 3.945 5 H 0.104 0.896 6 C -0.195 4.195 7 C -0.026 4.026 8 N -0.407 5.407 9 C 0.433 3.567 10 O -0.466 6.466 11 N -0.390 5.390 12 C 0.024 3.976 13 C -0.073 4.073 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.792 21.330 8.564 23.296 hybrid contribution -0.228 -1.151 0.907 1.483 sum 3.564 20.179 9.471 22.574 Atomic orbital electron populations 1.21790 0.94842 1.01985 1.00934 1.21258 0.96609 0.95711 0.98670 1.21763 1.00809 0.95607 1.01828 1.22539 0.98022 0.78996 0.94911 0.89635 1.23596 1.02308 0.96127 0.97442 1.22801 1.01501 0.95146 0.83135 1.48827 1.71282 1.12645 1.07908 1.15363 0.78038 0.79208 0.84057 1.90900 1.59823 1.82633 1.13224 1.45350 1.74188 1.08778 1.10697 1.21481 1.00698 0.84232 0.91147 1.20913 0.94836 0.94528 0.96993 1.21742 0.97276 1.00139 0.99067 1.21743 0.97952 1.00157 0.98384 1.19077 0.97189 0.90489 0.93304 1.21147 1.46301 0.94414 0.93120 0.92336 1.25011 0.95799 0.98875 0.94794 1.69954 1.49532 1.27131 1.06778 0.86711 0.78949 0.82889 0.79739 1.20342 1.21394 1.20340 0.92909 0.93043 0.92375 0.89498 0.92474 0.92659 0.92754 0.89567 0.88118 0.90771 0.90265 0.77304 0.92091 0.92115 0.91503 0.95426 0.93392 0.93395 0.95412 0.91505 0.96327 0.96328 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.18 37.15 0.30 -1.17 16 2 C -0.10 -1.08 2.64 -90.62 -0.24 -1.32 16 3 C -0.14 -1.09 9.16 37.16 0.34 -0.75 16 4 C 0.16 1.55 3.84 -72.38 -0.28 1.27 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -1.07 7.65 -26.35 -0.20 -1.27 16 7 C 0.10 0.80 8.28 -8.63 -0.07 0.73 16 8 N -0.67 -8.21 2.99 -183.34 -0.55 -8.76 16 9 C 0.73 12.14 8.21 -86.91 -0.71 11.42 16 10 O -0.59 -12.06 15.88 5.30 0.08 -11.97 16 11 N -0.74 -11.67 4.96 -65.23 -0.32 -12.00 16 12 C 0.15 2.76 4.56 -4.05 -0.02 2.74 16 13 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 14 C -0.12 -2.25 8.05 37.16 0.30 -1.95 16 15 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 16 C 0.04 0.92 4.04 -27.89 -0.11 0.81 16 17 C -0.51 -13.70 7.65 -34.44 -0.26 -13.97 16 18 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.05 0.45 6.53 -51.93 -0.34 0.11 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.78 7.12 -51.93 -0.37 0.41 16 28 H 0.09 1.21 7.32 -51.93 -0.38 0.83 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.72 5.73 -51.93 -0.30 0.42 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 5.41 5.89 -40.82 -0.24 5.17 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 44 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -31.86 361.82 -8.84 -40.69 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.38 Total: 1.62 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.84 Total: -5.42 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.13 Total: -46.67 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.86 -8.84 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358685875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.499 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds