Wall clock time and date at job start Tue Mar 31 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00020 * 2 1 3 5 5 H 1.08991 * 112.74144 * 50.26167 * 4 2 1 6 6 C 1.53502 * 113.52091 * 279.46186 * 4 2 1 7 7 C 1.53753 * 83.25776 * 218.97964 * 6 4 2 8 8 N 1.47057 * 87.89117 * 26.23828 * 7 6 4 9 9 C 1.34785 * 136.05790 * 152.95704 * 8 7 6 10 10 O 1.21588 * 119.99692 * 174.76399 * 9 8 7 11 11 N 1.34771 * 120.00042 * 354.76781 * 9 8 7 12 12 C 1.46492 * 120.00076 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47370 * 179.72186 * 12 11 9 14 14 C 1.53000 * 109.47047 * 300.00675 * 13 12 11 15 15 C 1.53005 * 109.46823 * 60.00257 * 13 12 11 16 16 C 1.52997 * 109.47338 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47301 * 180.02562 * 16 13 12 18 18 H 1.08004 * 119.99649 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00333 * 180.02562 * 17 16 13 20 20 N 1.31521 * 120.00310 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99994 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46539 * 90.00253 * 21 19 17 23 23 H 1.48497 * 109.47057 * 210.00213 * 21 19 17 24 24 H 1.48499 * 109.46712 * 330.00480 * 21 19 17 25 25 H 1.09003 * 109.46951 * 304.96351 * 1 2 3 26 26 H 1.08996 * 109.47299 * 64.96597 * 1 2 3 27 27 H 1.09003 * 109.46736 * 184.96521 * 1 2 3 28 28 H 1.08993 * 109.47133 * 240.00055 * 2 1 3 29 29 H 1.09001 * 109.46916 * 53.72686 * 3 2 1 30 30 H 1.09000 * 109.47278 * 173.73078 * 3 2 1 31 31 H 1.09005 * 109.47328 * 293.73152 * 3 2 1 32 32 H 1.08993 * 114.20500 * 332.73602 * 6 4 2 33 33 H 1.08996 * 114.20361 * 105.36277 * 6 4 2 34 34 H 1.09007 * 113.46152 * 271.50485 * 7 6 4 35 35 H 1.08996 * 113.55361 * 140.99572 * 7 6 4 36 36 H 0.97002 * 119.99572 * 359.72428 * 11 9 8 37 37 H 1.08999 * 109.47723 * 299.72480 * 12 11 9 38 38 H 1.09000 * 109.47049 * 59.72731 * 12 11 9 39 39 H 1.08997 * 109.47490 * 59.99874 * 14 13 12 40 40 H 1.09002 * 109.46728 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47089 * 299.99282 * 14 13 12 42 42 H 1.09001 * 109.46824 * 59.99752 * 15 13 12 43 43 H 1.08998 * 109.47273 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47071 * 300.00374 * 15 13 12 45 45 H 1.08996 * 109.47020 * 300.00166 * 16 13 12 46 46 H 1.09000 * 109.47280 * 60.00423 * 16 13 12 47 47 H 0.96996 * 119.99913 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5746 -1.6964 1.3923 6 6 2.0260 0.1537 2.5104 7 6 3.3571 -0.5593 2.8001 8 7 3.5069 -0.7521 1.3499 9 6 4.5357 -0.8984 0.4915 10 8 4.3199 -1.1396 -0.6805 11 7 5.8036 -0.7775 0.9323 12 6 6.9217 -0.9372 -0.0006 13 6 8.2421 -0.7457 0.7484 14 6 8.2834 0.6566 1.3589 15 6 8.3533 -1.7899 1.8612 16 6 9.4099 -0.9118 -0.2260 17 6 10.7104 -0.7238 0.5117 18 1 10.7046 -0.5070 1.5698 19 6 11.9077 -0.8274 -0.1641 20 7 13.0427 -0.6638 0.4799 21 14 11.9178 -1.2016 -1.9943 22 1 11.8809 0.0705 -2.7596 23 1 13.1523 -1.9513 -2.3394 24 1 10.7283 -2.0211 -2.3385 25 1 -0.3633 0.5889 0.8422 26 1 -0.3634 0.4348 -0.9311 27 1 -0.3633 -1.0239 0.0889 28 1 1.8933 -0.5138 -0.8899 29 1 1.5879 1.9877 0.8285 30 1 3.1242 1.4446 0.1122 31 1 1.7712 1.9229 -0.9408 32 1 2.1208 1.2217 2.3144 33 1 1.2273 -0.0864 3.2120 34 1 3.2388 -1.4918 3.3520 35 1 4.1158 0.0933 3.2320 36 1 5.9755 -0.5812 1.8665 37 1 6.8924 -1.9362 -0.4355 38 1 6.8426 -0.1932 -0.7933 39 1 7.4515 0.7754 2.0531 40 1 9.2239 0.7928 1.8928 41 1 8.2043 1.4005 0.5662 42 1 8.3238 -2.7889 1.4262 43 1 9.2937 -1.6532 2.3950 44 1 7.5213 -1.6712 2.5552 45 1 9.3806 -1.9106 -0.6613 46 1 9.3306 -0.1676 -1.0185 47 1 13.8850 -0.7371 0.0045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358685878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:39 Heat of formation + Delta-G solvation = -12.663500 kcal Electronic energy + Delta-G solvation = -23251.919678 eV Core-core repulsion = 20049.536432 eV Total energy + Delta-G solvation = -3202.383246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85766 -38.67643 -36.93380 -34.66035 -33.43200 -32.05526 -29.62967 -27.74233 -27.37847 -26.54020 -26.29714 -25.53906 -22.89510 -22.03828 -20.67077 -19.38682 -18.13779 -17.42186 -16.81755 -16.29168 -16.13673 -15.16331 -14.61356 -14.51452 -14.03477 -13.90156 -13.68766 -13.46980 -13.19345 -13.02779 -12.68984 -12.60028 -12.49815 -12.26538 -12.23819 -11.78610 -11.60297 -11.23697 -11.16496 -11.09715 -11.00807 -10.98951 -10.60005 -10.47137 -10.41563 -9.95126 -9.88118 -9.72801 -9.47897 -8.97879 -8.93299 -8.52367 -8.45189 -6.03208 -4.00364 2.53912 3.32959 3.38116 3.40820 3.45558 3.99266 4.16227 4.47055 4.61691 4.74395 4.77762 4.90817 5.00482 5.22596 5.23724 5.29715 5.35533 5.40986 5.43795 5.49609 5.57025 5.61041 5.66574 5.71257 5.74017 5.93730 5.97771 6.14418 6.15359 6.18738 6.22289 6.26950 6.35459 6.54394 6.61286 6.77920 6.95330 7.02760 7.06397 7.22423 7.33671 7.38902 7.79498 8.19718 8.53966 8.80909 9.00783 9.59676 11.09539 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032490 B = 0.003463 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.608332 B = 8084.354718 C = 8490.276407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.140 4.140 4 C 0.160 3.840 5 H 0.086 0.914 6 C -0.157 4.157 7 C 0.098 3.902 8 N -0.665 5.665 9 C 0.731 3.269 10 O -0.590 6.590 11 N -0.735 5.735 12 C 0.146 3.854 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.905 5.905 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.400 2.079 5.805 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.197 4.197 4 C 0.056 3.944 5 H 0.104 0.896 6 C -0.195 4.195 7 C -0.025 4.025 8 N -0.406 5.406 9 C 0.434 3.566 10 O -0.469 6.469 11 N -0.389 5.389 12 C 0.022 3.978 13 C -0.063 4.063 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.120 1.859 4.728 24.649 hybrid contribution 0.380 -0.228 -0.543 0.701 sum -23.740 1.630 4.185 24.161 Atomic orbital electron populations 1.21759 0.94649 1.01674 1.01881 1.21264 0.95463 0.96948 0.98703 1.21811 1.01502 0.95286 1.01090 1.22542 0.79054 0.97968 0.94876 0.89627 1.23690 0.97534 1.00852 0.97377 1.22902 0.97139 0.99552 0.82936 1.48825 1.05891 1.78042 1.07859 1.15335 0.79684 0.77697 0.83854 1.90898 1.83789 1.56570 1.15605 1.45273 1.03983 1.76420 1.13267 1.21489 0.83865 1.01195 0.91247 1.20697 0.93198 0.95706 0.96712 1.21756 1.01073 0.95781 0.99802 1.21753 1.01063 0.98122 0.97463 1.19586 0.93321 0.96598 0.94448 1.21079 0.88413 1.48043 0.97262 0.90411 1.24996 0.95644 0.94834 0.97959 1.69904 0.97452 1.50748 1.36278 0.86859 0.77633 0.78918 0.86382 1.20363 1.21513 1.18958 0.92601 0.92486 0.92695 0.89557 0.92706 0.92510 0.92988 0.88058 0.89555 0.90146 0.90726 0.77133 0.92124 0.92110 0.95172 0.90938 0.93431 0.93432 0.90930 0.95167 0.96342 0.96784 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.16 0.34 -0.69 16 2 C -0.10 -1.05 2.74 -90.62 -0.25 -1.30 16 3 C -0.14 -1.41 8.18 37.16 0.30 -1.11 16 4 C 0.16 1.50 3.81 -72.39 -0.28 1.22 16 5 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.16 -1.02 7.68 -26.08 -0.20 -1.22 16 7 C 0.10 0.77 8.30 -8.38 -0.07 0.70 16 8 N -0.67 -7.94 2.99 -183.04 -0.55 -8.48 16 9 C 0.73 11.76 8.19 -86.92 -0.71 11.04 16 10 O -0.59 -11.79 16.09 5.29 0.09 -11.71 16 11 N -0.73 -11.19 4.96 -65.23 -0.32 -11.52 16 12 C 0.15 2.58 4.56 -4.04 -0.02 2.56 16 13 C -0.06 -1.17 0.54 -154.51 -0.08 -1.26 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 17 C -0.51 -13.76 8.21 -34.44 -0.28 -14.04 16 18 H 0.08 2.21 5.92 -52.48 -0.31 1.90 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 21 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 1.16 7.38 -51.93 -0.38 0.77 16 29 H 0.05 0.44 6.50 -51.93 -0.34 0.10 16 30 H 0.06 0.72 7.17 -51.93 -0.37 0.34 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.68 5.72 -51.93 -0.30 0.38 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 5.22 5.89 -40.82 -0.24 4.98 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -32.23 358.61 -8.46 -40.69 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.35 Total: 1.49 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.83 Total: -6.30 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.10 Total: -46.62 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.23 -8.46 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358685878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.029 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds