Wall clock time and date at job start Tue Mar 31 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.53000 * 109.46975 * 239.99525 * 2 1 3 5 5 C 1.50701 * 109.46983 * 60.00152 * 4 2 1 6 6 H 1.08000 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99634 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00657 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99703 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47233 * 60.00389 * 9 7 5 11 11 H 1.48496 * 109.47105 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47194 * 300.00217 * 9 7 5 13 13 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 14 14 N 1.46504 * 109.46928 * 299.99525 * 13 2 1 15 15 C 1.34777 * 119.99854 * 179.97438 * 14 13 2 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00097 * 180.27545 * 15 14 13 18 18 C 1.44584 * 118.64366 * 359.46699 * 17 15 14 19 19 C 1.54313 * 109.90409 * 270.85312 * 18 17 15 20 20 C 1.47097 * 110.29264 * 288.75681 * 19 18 17 21 21 C 1.52567 * 114.32925 * 62.73084 * 20 19 18 22 22 C 1.50871 * 109.35561 * 274.98263 * 21 20 19 23 23 C 1.47602 * 118.64537 * 179.72459 * 17 15 14 24 24 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 25 25 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 29 29 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 30 30 H 1.08998 * 109.46983 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47123 * 300.00203 * 4 2 1 32 32 H 0.96990 * 120.00229 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47202 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47419 * 59.99682 * 13 2 1 35 35 H 0.97000 * 120.00410 * 0.02562 * 14 13 2 36 36 H 1.08996 * 109.44629 * 30.75693 * 18 17 15 37 37 H 1.09000 * 109.45033 * 150.67967 * 18 17 15 38 38 H 1.08997 * 109.40315 * 168.47079 * 19 18 17 39 39 H 1.09002 * 109.28540 * 48.96936 * 19 18 17 40 40 H 1.09005 * 108.51227 * 301.47645 * 20 19 18 41 41 H 1.08999 * 108.51399 * 183.99361 * 20 19 18 42 42 H 1.08996 * 109.48684 * 155.01476 * 21 20 19 43 43 H 1.08996 * 109.48642 * 34.95183 * 21 20 19 44 44 H 1.09002 * 109.37006 * 331.69254 * 22 21 20 45 45 H 1.09007 * 109.36955 * 212.07710 * 22 21 20 46 46 H 1.08998 * 108.95359 * 258.55313 * 23 17 15 47 47 H 1.09005 * 108.95048 * 17.27751 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9164 0.8669 -2.3806 7 6 1.8711 -0.4819 -3.7319 8 7 2.6272 -1.5512 -3.8525 9 14 1.2491 0.3991 -5.2571 10 1 1.7442 1.7991 -5.2568 11 1 1.7439 -0.3011 -6.4696 12 1 -0.2359 0.3992 -5.2576 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4913 3.6696 16 8 2.5757 -1.4799 3.7812 17 7 1.4230 0.1409 4.7700 18 6 0.5992 1.3173 4.6033 19 6 1.4890 2.5761 4.5323 20 6 2.0660 2.8681 5.8535 21 6 2.9906 1.7796 6.3901 22 6 2.1683 0.7236 7.0866 23 6 1.7923 -0.3929 6.0956 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 2.8621 -1.8822 -4.7335 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2494 35 1 0.9937 0.7580 2.3564 36 1 0.0261 1.2312 3.6801 37 1 -0.0845 1.4043 5.4477 38 1 0.8895 3.4254 4.2048 39 1 2.2937 2.4082 3.8164 40 1 1.2510 3.0108 6.5632 41 1 2.6292 3.7989 5.7872 42 1 3.6952 2.2171 7.0974 43 1 3.5383 1.3275 5.5633 44 1 1.2594 1.1763 7.4829 45 1 2.7460 0.2988 7.9076 46 1 0.9495 -0.9546 6.4984 47 1 2.6432 -1.0649 5.9821 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358687166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:34 Heat of formation + Delta-G solvation = -52.108075 kcal Electronic energy + Delta-G solvation = -23603.290952 eV Core-core repulsion = 20399.197261 eV Total energy + Delta-G solvation = -3204.093691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54287 -38.06587 -36.92073 -34.12373 -33.54146 -32.64916 -31.79935 -27.40275 -26.89663 -26.49351 -25.99140 -25.26218 -22.99362 -21.67877 -20.66184 -19.42332 -18.57022 -17.48474 -16.63212 -16.23014 -15.84907 -14.89815 -14.87850 -14.58528 -14.44496 -14.07635 -13.78617 -13.48749 -13.28035 -13.08139 -12.73683 -12.68369 -12.43102 -12.04047 -12.01353 -11.74777 -11.13853 -11.07712 -10.99142 -10.93880 -10.88189 -10.85799 -10.63184 -10.61084 -10.36495 -10.24474 -9.87220 -9.84821 -9.17647 -8.91531 -8.83501 -8.37711 -8.33942 -5.98115 -3.99522 2.80223 3.32888 3.38392 3.39458 3.42175 4.10409 4.45689 4.48517 4.57744 4.67871 4.76377 4.91239 5.10447 5.23845 5.37205 5.39266 5.46940 5.52029 5.54669 5.66581 5.67561 5.74398 5.77723 5.88490 5.91581 5.94191 6.03017 6.16914 6.20148 6.24895 6.31539 6.44460 6.60458 6.63821 6.64743 6.84565 7.04060 7.09229 7.09583 7.17764 7.66417 7.79184 8.00568 8.17713 8.42469 8.82919 9.05133 9.63420 11.13339 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033292 B = 0.003561 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.851640 B = 7860.558613 C = 8246.081760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.145 3.855 14 N -0.737 5.737 15 C 0.698 3.302 16 O -0.595 6.595 17 N -0.625 5.625 18 C 0.113 3.887 19 C -0.143 4.143 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.130 4.130 23 C 0.130 3.870 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 8.782 20.693 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.022 3.978 14 N -0.393 5.393 15 C 0.399 3.601 16 O -0.473 6.473 17 N -0.363 5.363 18 C -0.012 4.012 19 C -0.182 4.182 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.169 4.169 23 C 0.007 3.993 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.506 7.926 20.636 22.382 hybrid contribution -0.588 0.891 -0.977 1.447 sum -4.094 8.817 19.659 21.931 Atomic orbital electron populations 1.21748 0.95365 1.01138 1.00028 1.20909 0.95408 0.95855 0.95100 1.21746 1.00535 0.95930 1.00058 1.19078 0.96367 0.95224 0.89399 1.21147 1.31205 1.12084 0.90543 0.92329 1.25008 0.95326 0.95075 0.99047 1.69953 1.36894 1.23013 1.23535 0.86717 0.79130 0.79765 0.82708 1.20339 1.21412 1.20343 1.21485 0.98649 0.95668 0.82039 1.45562 1.55966 1.33242 1.04556 1.16050 0.80314 0.82962 0.80793 1.90892 1.42984 1.27699 1.85757 1.46865 1.54520 1.29623 1.05259 1.21355 0.92787 0.84724 1.02288 1.21262 1.00453 0.98109 0.98412 1.20410 0.99065 0.98632 0.97056 1.21056 0.97979 0.96114 1.00334 1.21790 1.00288 0.96867 0.97924 1.21638 1.01222 0.95551 0.80920 0.95483 0.91474 0.93351 0.93383 0.91499 0.95403 0.96326 0.96326 0.92985 0.92079 0.92086 0.76881 0.90945 0.90430 0.90760 0.91342 0.92407 0.92527 0.92101 0.91385 0.91775 0.90804 0.92494 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.60 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.15 2.67 4.56 -4.04 -0.02 2.65 16 14 N -0.74 -11.33 4.79 -65.22 -0.31 -11.65 16 15 C 0.70 11.28 8.22 -86.92 -0.71 10.56 16 16 O -0.59 -12.04 15.62 5.28 0.08 -11.96 16 17 N -0.63 -7.54 2.25 -178.62 -0.40 -7.94 16 18 C 0.11 1.03 5.10 -4.38 -0.02 1.01 16 19 C -0.14 -1.22 5.72 -28.88 -0.17 -1.38 16 20 C -0.11 -0.89 5.15 -29.79 -0.15 -1.04 16 21 C -0.12 -1.01 5.51 -28.02 -0.15 -1.17 16 22 C -0.13 -1.02 5.71 -27.30 -0.16 -1.18 16 23 C 0.13 1.37 6.11 -2.94 -0.02 1.35 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 5.21 3.77 -40.82 -0.15 5.05 16 36 H 0.07 0.66 6.21 -51.93 -0.32 0.33 16 37 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 44 H 0.06 0.43 7.32 -51.93 -0.38 0.05 16 45 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 1.15 6.95 -51.93 -0.36 0.79 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -31.19 352.47 -9.28 -40.47 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.31 Total: 1.45 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.36 Total: -6.10 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.02 Total: -45.38 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.19 -9.28 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.635 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds