Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.53000 * 109.46975 * 239.99525 * 2 1 3 5 5 C 1.50701 * 109.46983 * 60.00152 * 4 2 1 6 6 H 1.08000 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99634 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00657 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99703 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47233 * 60.00389 * 9 7 5 11 11 H 1.48496 * 109.47105 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47194 * 300.00217 * 9 7 5 13 13 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 14 14 N 1.46504 * 109.46928 * 299.99525 * 13 2 1 15 15 C 1.34777 * 119.99854 * 179.97438 * 14 13 2 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00097 * 180.27545 * 15 14 13 18 18 C 1.44584 * 118.64366 * 359.46699 * 17 15 14 19 19 C 1.54313 * 109.90409 * 270.85312 * 18 17 15 20 20 C 1.47097 * 110.29264 * 288.75681 * 19 18 17 21 21 C 1.52567 * 114.32925 * 62.73084 * 20 19 18 22 22 C 1.50871 * 109.35561 * 274.98263 * 21 20 19 23 23 C 1.47602 * 118.64537 * 179.72459 * 17 15 14 24 24 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 25 25 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 29 29 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 30 30 H 1.08998 * 109.46983 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47123 * 300.00203 * 4 2 1 32 32 H 0.96990 * 120.00229 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47202 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47419 * 59.99682 * 13 2 1 35 35 H 0.97000 * 120.00410 * 0.02562 * 14 13 2 36 36 H 1.08996 * 109.44629 * 30.75693 * 18 17 15 37 37 H 1.09000 * 109.45033 * 150.67967 * 18 17 15 38 38 H 1.08997 * 109.40315 * 168.47079 * 19 18 17 39 39 H 1.09002 * 109.28540 * 48.96936 * 19 18 17 40 40 H 1.09005 * 108.51227 * 301.47645 * 20 19 18 41 41 H 1.08999 * 108.51399 * 183.99361 * 20 19 18 42 42 H 1.08996 * 109.48684 * 155.01476 * 21 20 19 43 43 H 1.08996 * 109.48642 * 34.95183 * 21 20 19 44 44 H 1.09002 * 109.37006 * 331.69254 * 22 21 20 45 45 H 1.09007 * 109.36955 * 212.07710 * 22 21 20 46 46 H 1.08998 * 108.95359 * 258.55313 * 23 17 15 47 47 H 1.09005 * 108.95048 * 17.27751 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9164 0.8669 -2.3806 7 6 1.8711 -0.4819 -3.7319 8 7 2.6272 -1.5512 -3.8525 9 14 1.2491 0.3991 -5.2571 10 1 1.7442 1.7991 -5.2568 11 1 1.7439 -0.3011 -6.4696 12 1 -0.2359 0.3992 -5.2576 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4913 3.6696 16 8 2.5757 -1.4799 3.7812 17 7 1.4230 0.1409 4.7700 18 6 0.5992 1.3173 4.6033 19 6 1.4890 2.5761 4.5323 20 6 2.0660 2.8681 5.8535 21 6 2.9906 1.7796 6.3901 22 6 2.1683 0.7236 7.0866 23 6 1.7923 -0.3929 6.0956 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 2.8621 -1.8822 -4.7335 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2494 35 1 0.9937 0.7580 2.3564 36 1 0.0261 1.2312 3.6801 37 1 -0.0845 1.4043 5.4477 38 1 0.8895 3.4254 4.2048 39 1 2.2937 2.4082 3.8164 40 1 1.2510 3.0108 6.5632 41 1 2.6292 3.7989 5.7872 42 1 3.6952 2.2171 7.0974 43 1 3.5383 1.3275 5.5633 44 1 1.2594 1.1763 7.4829 45 1 2.7460 0.2988 7.9076 46 1 0.9495 -0.9546 6.4984 47 1 2.6432 -1.0649 5.9821 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358687166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -69.851736 kcal Electronic energy + Delta-G solvation = -23604.060375 eV Core-core repulsion = 20399.197261 eV Total energy + Delta-G solvation = -3204.863114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66972 -39.25727 -38.29162 -35.45090 -34.75057 -34.00119 -33.10976 -29.15009 -28.17714 -27.96650 -27.16284 -26.16383 -24.82103 -22.74519 -21.38156 -20.63736 -19.83888 -18.80130 -18.34906 -17.60948 -16.88987 -16.52596 -15.94942 -15.84946 -15.64574 -15.15401 -15.06692 -14.77918 -14.43690 -14.23616 -14.06766 -13.92273 -13.76706 -13.52125 -13.10258 -12.82363 -12.74493 -12.58839 -12.52333 -12.32624 -12.21502 -11.98965 -11.82471 -11.62375 -11.54099 -11.50444 -11.31604 -11.17657 -10.95861 -10.85049 -10.49464 -10.17532 -9.43624 -8.12464 -6.20709 1.43594 1.45976 1.53092 1.69413 2.14837 2.45523 3.01565 3.21832 3.76360 3.92525 3.97389 4.03742 4.07132 4.09261 4.21968 4.22525 4.39476 4.57489 4.68563 4.70055 4.72583 4.75024 4.78036 4.87674 4.95898 4.97423 5.05911 5.11490 5.12153 5.24713 5.27932 5.29835 5.38818 5.40681 5.49301 5.50057 5.51059 5.54130 5.59621 5.72196 5.80854 5.90657 5.94792 6.31699 6.93803 7.01704 7.47083 7.57827 9.00042 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033292 B = 0.003561 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.851640 B = 7860.558613 C = 8246.081760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.119 4.119 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.160 3.840 14 N -0.724 5.724 15 C 0.691 3.309 16 O -0.643 6.643 17 N -0.614 5.614 18 C 0.104 3.896 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.120 4.120 23 C 0.124 3.876 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.066 0.934 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.259 0.741 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 11.811 22.352 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.035 3.965 14 N -0.382 5.382 15 C 0.393 3.607 16 O -0.526 6.526 17 N -0.350 5.350 18 C -0.019 4.019 19 C -0.179 4.179 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.158 4.158 23 C 0.002 3.998 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.907 11.020 22.336 25.598 hybrid contribution 0.179 -0.077 -1.401 1.415 sum -5.728 10.943 20.935 24.307 Atomic orbital electron populations 1.21675 0.93480 1.00959 1.01559 1.20707 0.96784 0.96298 0.92610 1.21667 0.99803 0.94604 1.01537 1.18956 0.94222 0.94195 0.92300 1.21561 1.30497 1.12160 0.90992 0.90774 1.25962 0.95639 0.95845 1.02762 1.70121 1.38770 1.25025 1.24156 0.85583 0.78994 0.78750 0.78217 1.19069 1.21794 1.19049 1.21053 0.97294 0.94975 0.83178 1.45210 1.56075 1.33373 1.03528 1.16277 0.80061 0.82712 0.81691 1.90860 1.45168 1.30051 1.86507 1.46947 1.53759 1.29892 1.04436 1.21678 0.92839 0.83493 1.03854 1.21253 0.99840 0.98458 0.98310 1.20419 0.99485 0.98175 0.97094 1.21068 0.98384 0.96657 0.99510 1.21756 1.01319 0.95633 0.97116 1.21796 1.00661 0.96550 0.80793 0.91462 0.92291 0.94469 0.94626 0.92301 0.91479 0.99700 0.99632 0.93182 0.94230 0.94063 0.75237 0.90468 0.87548 0.88452 0.93878 0.90273 0.92198 0.91077 0.94827 0.89402 0.89638 0.91082 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -27.65 7.65 25.60 0.20 -27.46 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 C 0.16 6.08 4.56 86.38 0.39 6.48 16 14 N -0.72 -21.83 4.79 -478.52 -2.29 -24.12 16 15 C 0.69 22.40 8.22 179.06 1.47 23.87 16 16 O -0.64 -27.18 15.62 -4.01 -0.06 -27.25 16 17 N -0.61 -13.92 2.25 -837.28 -1.88 -15.80 16 18 C 0.10 1.54 5.10 87.18 0.44 1.98 16 19 C -0.14 -1.91 5.72 29.20 0.17 -1.74 16 20 C -0.11 -1.39 5.15 28.62 0.15 -1.24 16 21 C -0.12 -1.81 5.51 29.76 0.16 -1.65 16 22 C -0.12 -1.56 5.71 30.22 0.17 -1.39 16 23 C 0.12 2.48 6.11 86.49 0.53 3.01 16 24 H 0.07 1.73 6.86 -2.38 -0.02 1.71 16 25 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 29 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 30 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.26 15.14 8.31 -92.72 -0.77 14.37 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.41 9.75 3.77 -92.71 -0.35 9.40 16 36 H 0.08 1.08 6.21 -2.39 -0.01 1.07 16 37 H 0.11 1.04 8.06 -2.39 -0.02 1.02 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.67 7.36 -2.38 -0.02 0.65 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.03 0.75 7.48 -2.39 -0.02 0.73 16 44 H 0.09 0.78 7.32 -2.39 -0.02 0.76 16 45 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.57 6.95 -2.38 -0.02 1.55 16 Total: -1.00 -71.88 352.47 4.05 -67.83 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.58 Total: 16.27 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.40 Total: -5.18 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -3.89 Total: -97.28 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.88 4.05 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.022 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds