Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.53785 * 113.61570 * 274.13670 * 4 3 2 6 6 C 1.53956 * 87.02052 * 220.04627 * 5 4 3 7 7 C 1.53777 * 87.11087 * 25.36196 * 6 5 4 8 8 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 9 9 O 1.21585 * 120.00914 * 179.97438 * 8 2 1 10 10 N 1.34781 * 119.99568 * 359.97438 * 8 2 1 11 11 C 1.46500 * 120.00006 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47327 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47005 * 299.99869 * 12 11 10 14 14 C 1.53006 * 109.46919 * 59.99556 * 12 11 10 15 15 C 1.53002 * 109.47491 * 179.97438 * 12 11 10 16 16 C 1.50693 * 109.47174 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00513 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99993 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46861 * 90.00280 * 20 18 16 22 22 H 1.48501 * 109.47285 * 209.99646 * 20 18 16 23 23 H 1.48495 * 109.47491 * 330.00342 * 20 18 16 24 24 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 25 25 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 26 26 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 27 27 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 28 28 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 29 29 H 1.09001 * 112.85054 * 45.33091 * 4 3 2 30 30 H 1.09000 * 113.61195 * 334.56762 * 5 4 3 31 31 H 1.09001 * 113.61520 * 105.46896 * 5 4 3 32 32 H 1.09005 * 113.53676 * 270.80967 * 6 5 4 33 33 H 1.08998 * 113.74180 * 139.94369 * 6 5 4 34 34 H 1.09011 * 113.61618 * 220.09268 * 7 6 5 35 35 H 1.09000 * 113.69499 * 89.19666 * 7 6 5 36 36 H 0.97002 * 119.99826 * 359.97438 * 10 8 2 37 37 H 1.09003 * 109.47193 * 299.99874 * 11 10 8 38 38 H 1.09001 * 109.47647 * 59.99787 * 11 10 8 39 39 H 1.09000 * 109.46838 * 59.99867 * 13 12 11 40 40 H 1.09001 * 109.47158 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47147 * 300.00164 * 13 12 11 42 42 H 1.09003 * 109.46709 * 60.00404 * 14 12 11 43 43 H 1.09003 * 109.47112 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47430 * 299.99991 * 14 12 11 45 45 H 1.08995 * 109.46900 * 300.00348 * 15 12 11 46 46 H 1.08998 * 109.46753 * 59.99779 * 15 12 11 47 47 H 0.97007 * 120.00231 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.7242 1.1027 -2.0572 6 6 3.9734 2.4785 -2.7017 7 6 3.1442 3.0793 -1.5545 8 6 2.1389 -1.1671 -0.0005 9 8 3.3548 -1.1671 -0.0010 10 7 1.4651 -2.3344 -0.0005 11 6 2.1976 -3.6030 -0.0005 12 6 1.2035 -4.7660 0.0001 13 6 0.3243 -4.6848 1.2497 14 6 0.3233 -4.6852 -1.2488 15 6 1.9685 -6.0911 -0.0005 16 6 0.9892 -7.2365 -0.0005 17 1 -0.0726 -7.0392 -0.0005 18 6 1.4488 -8.5364 -0.0016 19 7 2.7419 -8.7767 -0.0021 20 14 0.2350 -9.9563 -0.0009 21 1 -0.0881 -10.3319 -1.4008 22 1 0.8357 -11.1208 0.6979 23 1 -1.0075 -9.5450 0.7006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 1.5714 1.6133 -2.0769 30 1 4.4759 0.8239 -1.3187 31 1 3.5248 0.3109 -2.7793 32 1 3.5091 2.5907 -3.6815 33 1 5.0194 2.7849 -2.6914 34 1 2.4770 3.8811 -1.8713 35 1 3.7357 3.3426 -0.6777 36 1 0.4950 -2.3344 0.0002 37 1 2.8243 -3.6608 -0.8905 38 1 2.8243 -3.6608 0.8894 39 1 -0.2207 -3.7408 1.2497 40 1 -0.3842 -5.5130 1.2500 41 1 0.9514 -4.7422 2.1394 42 1 0.9496 -4.7431 -2.1390 43 1 -0.3847 -5.5140 -1.2486 44 1 -0.2218 -3.7413 -1.2488 45 1 2.5945 -6.1487 -0.8909 46 1 2.5958 -6.1488 0.8890 47 1 3.0653 -9.6912 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358687464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -25.945207 kcal Electronic energy + Delta-G solvation = -23048.970866 eV Core-core repulsion = 19846.011682 eV Total energy + Delta-G solvation = -3202.959184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23746 -38.69913 -37.14144 -35.21968 -33.52114 -32.03544 -29.07266 -27.16927 -26.68752 -26.49432 -25.79369 -25.47387 -23.34062 -22.37082 -19.77071 -19.47184 -18.60164 -17.41979 -16.43533 -16.17364 -15.89596 -15.43528 -14.63864 -14.55141 -14.15364 -14.02537 -13.78558 -13.15312 -13.06854 -12.98939 -12.79999 -12.48940 -12.45104 -12.14285 -12.05195 -12.00215 -11.51962 -11.12445 -11.00225 -10.84282 -10.80634 -10.62124 -10.47545 -10.37125 -10.27602 -10.23047 -9.87175 -9.85241 -9.17985 -8.90905 -8.80279 -8.37506 -8.34530 -5.98625 -3.99872 2.80278 3.31462 3.38507 3.40196 3.45247 4.12394 4.46187 4.52135 4.58066 4.63895 4.79335 4.93604 5.16656 5.26557 5.33453 5.36874 5.45267 5.49980 5.54619 5.58640 5.67383 5.70514 5.75907 5.77597 5.85862 6.05258 6.17159 6.19697 6.23822 6.30274 6.42711 6.44408 6.53575 6.63977 6.64573 6.85116 7.05004 7.09200 7.09385 7.17630 7.66262 7.78897 8.00206 8.17683 8.42200 8.85019 9.04990 9.63107 11.12849 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.003162 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.841655 B = 8852.598256 C = 9197.929237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.637 5.637 3 C 0.144 3.856 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.132 4.132 8 C 0.701 3.299 9 O -0.588 6.588 10 N -0.738 5.738 11 C 0.146 3.854 12 C -0.072 4.072 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.511 4.511 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 22.232 -1.571 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.375 5.375 3 C 0.021 3.979 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.184 4.184 7 C -0.171 4.171 8 C 0.403 3.597 9 O -0.466 6.466 10 N -0.395 5.395 11 C 0.023 3.977 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.001 4.001 16 C -0.549 4.549 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.837 22.050 -1.552 22.435 hybrid contribution -1.200 -0.910 -0.084 1.508 sum -5.037 21.140 -1.636 21.793 Atomic orbital electron populations 1.21685 0.80330 1.02762 1.01512 1.47013 1.05992 1.05209 1.79331 1.21337 0.97514 0.83253 0.95793 1.22974 0.98177 0.96392 0.97243 1.22900 0.97486 0.95742 0.99977 1.22873 1.00066 0.97605 0.97820 1.22864 0.99009 0.96039 0.99142 1.15942 0.85439 0.80378 0.77990 1.90889 1.11488 1.86195 1.58008 1.45528 1.09882 1.05008 1.79034 1.21469 0.94314 0.80322 1.01600 1.20914 0.95365 0.96035 0.94987 1.21746 0.99599 0.99546 0.97370 1.21746 0.99595 0.99558 0.97365 1.19081 0.94991 0.88510 0.97515 1.21183 0.92938 0.90543 1.50231 0.92284 1.25014 0.94962 0.98942 0.95588 1.69968 1.12458 1.20073 1.50881 0.86654 0.81356 0.82313 0.78009 1.20793 1.21346 1.19965 0.92953 0.91549 0.91079 0.91026 0.89771 0.89592 0.89277 0.92106 0.90648 0.91652 0.91754 0.90055 0.77053 0.92091 0.92113 0.95475 0.91485 0.93362 0.93383 0.91507 0.95424 0.96329 0.96317 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.25 59.84 0.61 1.29 16 2 N -0.64 -7.58 2.87 -187.36 -0.54 -8.12 16 3 C 0.14 1.50 5.28 -4.04 -0.02 1.48 16 4 C -0.13 -1.26 3.96 -89.81 -0.36 -1.61 16 5 C -0.12 -1.45 7.02 -25.82 -0.18 -1.63 16 6 C -0.15 -1.33 8.09 -25.83 -0.21 -1.54 16 7 C -0.13 -1.07 7.65 -25.92 -0.20 -1.27 16 8 C 0.70 11.15 8.28 -86.92 -0.72 10.43 16 9 O -0.59 -11.43 15.01 5.29 0.08 -11.35 16 10 N -0.74 -11.30 4.83 -65.22 -0.31 -11.62 16 11 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 12 C -0.07 -1.39 0.54 -154.50 -0.08 -1.48 16 13 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 16 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 17 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 26 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 27 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 28 H 0.08 1.03 7.15 -51.93 -0.37 0.66 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.20 7.64 -51.93 -0.40 0.81 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.39 5.15 3.89 -40.82 -0.16 5.00 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -31.08 363.29 -9.04 -40.11 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.40 Total: 2.18 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.05 Total: -7.10 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.12 Total: -45.52 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.08 -9.04 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.168 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds