Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.53785 * 113.61570 * 274.13670 * 4 3 2 6 6 C 1.53956 * 87.02052 * 220.04627 * 5 4 3 7 7 C 1.53777 * 87.11087 * 25.36196 * 6 5 4 8 8 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 9 9 O 1.21585 * 120.00914 * 179.97438 * 8 2 1 10 10 N 1.34781 * 119.99568 * 359.97438 * 8 2 1 11 11 C 1.46500 * 120.00006 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47327 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47005 * 299.99869 * 12 11 10 14 14 C 1.53006 * 109.46919 * 59.99556 * 12 11 10 15 15 C 1.53002 * 109.47491 * 179.97438 * 12 11 10 16 16 C 1.50693 * 109.47174 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00513 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99993 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46861 * 90.00280 * 20 18 16 22 22 H 1.48501 * 109.47285 * 209.99646 * 20 18 16 23 23 H 1.48495 * 109.47491 * 330.00342 * 20 18 16 24 24 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 25 25 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 26 26 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 27 27 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 28 28 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 29 29 H 1.09001 * 112.85054 * 45.33091 * 4 3 2 30 30 H 1.09000 * 113.61195 * 334.56762 * 5 4 3 31 31 H 1.09001 * 113.61520 * 105.46896 * 5 4 3 32 32 H 1.09005 * 113.53676 * 270.80967 * 6 5 4 33 33 H 1.08998 * 113.74180 * 139.94369 * 6 5 4 34 34 H 1.09011 * 113.61618 * 220.09268 * 7 6 5 35 35 H 1.09000 * 113.69499 * 89.19666 * 7 6 5 36 36 H 0.97002 * 119.99826 * 359.97438 * 10 8 2 37 37 H 1.09003 * 109.47193 * 299.99874 * 11 10 8 38 38 H 1.09001 * 109.47647 * 59.99787 * 11 10 8 39 39 H 1.09000 * 109.46838 * 59.99867 * 13 12 11 40 40 H 1.09001 * 109.47158 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47147 * 300.00164 * 13 12 11 42 42 H 1.09003 * 109.46709 * 60.00404 * 14 12 11 43 43 H 1.09003 * 109.47112 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47430 * 299.99991 * 14 12 11 45 45 H 1.08995 * 109.46900 * 300.00348 * 15 12 11 46 46 H 1.08998 * 109.46753 * 59.99779 * 15 12 11 47 47 H 0.97007 * 120.00231 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.7242 1.1027 -2.0572 6 6 3.9734 2.4785 -2.7017 7 6 3.1442 3.0793 -1.5545 8 6 2.1389 -1.1671 -0.0005 9 8 3.3548 -1.1671 -0.0010 10 7 1.4651 -2.3344 -0.0005 11 6 2.1976 -3.6030 -0.0005 12 6 1.2035 -4.7660 0.0001 13 6 0.3243 -4.6848 1.2497 14 6 0.3233 -4.6852 -1.2488 15 6 1.9685 -6.0911 -0.0005 16 6 0.9892 -7.2365 -0.0005 17 1 -0.0726 -7.0392 -0.0005 18 6 1.4488 -8.5364 -0.0016 19 7 2.7419 -8.7767 -0.0021 20 14 0.2350 -9.9563 -0.0009 21 1 -0.0881 -10.3319 -1.4008 22 1 0.8357 -11.1208 0.6979 23 1 -1.0075 -9.5450 0.7006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 1.5714 1.6133 -2.0769 30 1 4.4759 0.8239 -1.3187 31 1 3.5248 0.3109 -2.7793 32 1 3.5091 2.5907 -3.6815 33 1 5.0194 2.7849 -2.6914 34 1 2.4770 3.8811 -1.8713 35 1 3.7357 3.3426 -0.6777 36 1 0.4950 -2.3344 0.0002 37 1 2.8243 -3.6608 -0.8905 38 1 2.8243 -3.6608 0.8894 39 1 -0.2207 -3.7408 1.2497 40 1 -0.3842 -5.5130 1.2500 41 1 0.9514 -4.7422 2.1394 42 1 0.9496 -4.7431 -2.1390 43 1 -0.3847 -5.5140 -1.2486 44 1 -0.2218 -3.7413 -1.2488 45 1 2.5945 -6.1487 -0.8909 46 1 2.5958 -6.1488 0.8890 47 1 3.0653 -9.6912 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358687464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = -43.668119 kcal Electronic energy + Delta-G solvation = -23049.739389 eV Core-core repulsion = 19846.011682 eV Total energy + Delta-G solvation = -3203.727707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38397 -39.66435 -38.62236 -36.29403 -35.19766 -33.84962 -29.99163 -29.02811 -27.96449 -27.82676 -26.94131 -26.35678 -24.91279 -23.63702 -21.00609 -20.27490 -19.97998 -18.73976 -18.34900 -17.41966 -16.93166 -16.52117 -16.31328 -15.74587 -15.41271 -15.34308 -15.01362 -14.58985 -14.36074 -14.13472 -13.94998 -13.85416 -13.64271 -13.30300 -13.18294 -12.88101 -12.81809 -12.71412 -12.58580 -12.33933 -12.31823 -12.21779 -11.96334 -11.58457 -11.53358 -11.35055 -11.17460 -11.04596 -10.95213 -10.84117 -10.50815 -10.11699 -9.40025 -8.13211 -6.21260 1.43049 1.43665 1.54023 1.72739 2.21378 2.44863 3.06269 3.21225 3.72074 3.83226 3.85962 3.98038 4.01650 4.09572 4.22363 4.31044 4.45035 4.49619 4.64480 4.68687 4.73170 4.75208 4.79459 4.87302 4.92053 4.93418 4.96514 5.03218 5.09103 5.11793 5.12191 5.13545 5.37708 5.40216 5.49869 5.50127 5.54467 5.59330 5.62833 5.66280 5.80829 5.90446 5.99217 6.31332 6.93596 7.04176 7.46520 7.63607 8.99491 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.003162 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.841655 B = 8852.598256 C = 9197.929237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.630 5.630 3 C 0.141 3.859 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.118 4.118 8 C 0.694 3.306 9 O -0.632 6.632 10 N -0.727 5.727 11 C 0.162 3.838 12 C -0.064 4.064 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.041 3.959 16 C -0.513 4.513 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.940 5.940 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.258 1.258 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.407 0.593 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.067 0.933 45 H -0.016 1.016 46 H -0.015 1.015 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 24.517 -1.546 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.367 5.367 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.176 4.176 6 C -0.179 4.179 7 C -0.156 4.156 8 C 0.395 3.605 9 O -0.514 6.514 10 N -0.385 5.385 11 C 0.037 3.963 12 C -0.064 4.064 13 C -0.176 4.176 14 C -0.176 4.176 15 C 0.003 3.997 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.581 5.581 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.182 1.182 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.373 24.384 -1.528 25.520 hybrid contribution -0.068 -1.562 -0.102 1.567 sum -7.440 22.822 -1.629 24.059 Atomic orbital electron populations 1.21995 0.77568 1.04540 1.02898 1.47097 1.07702 1.04128 1.77753 1.21498 0.97092 0.83283 0.96319 1.22957 0.97349 0.97137 0.96715 1.22880 0.98603 0.96587 0.99488 1.22881 1.00762 0.95524 0.98697 1.22805 0.98651 0.95487 0.98656 1.16176 0.85049 0.81416 0.77861 1.90868 1.13709 1.86954 1.59824 1.45186 1.10274 1.03832 1.79198 1.21013 0.93892 0.81730 0.99636 1.20712 0.95388 0.93181 0.97165 1.21669 0.98972 1.01362 0.95622 1.21671 0.98973 1.01354 0.95632 1.18960 0.94611 0.91851 0.94283 1.21590 0.93810 0.90959 1.48714 0.90793 1.25968 0.96668 1.02178 0.95471 1.70132 1.14761 1.20578 1.52609 0.85527 0.79300 0.78477 0.78230 1.20165 1.21621 1.18201 0.91693 0.91116 0.88063 0.87331 0.92289 0.88813 0.92007 0.94616 0.89686 0.91417 0.89490 0.89593 0.75363 0.94305 0.94141 0.91380 0.92402 0.94504 0.94651 0.92360 0.91406 0.99733 0.99633 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.25 127.77 1.31 2.22 16 2 N -0.63 -13.64 2.87 -864.93 -2.49 -16.13 16 3 C 0.14 2.64 5.28 86.38 0.46 3.10 16 4 C -0.12 -2.17 3.96 -10.27 -0.04 -2.21 16 5 C -0.14 -3.31 7.02 31.18 0.22 -3.09 16 6 C -0.14 -2.41 8.09 31.18 0.25 -2.15 16 7 C -0.12 -1.60 7.65 31.12 0.24 -1.36 16 8 C 0.69 21.80 8.28 179.05 1.48 23.28 16 9 O -0.63 -25.61 15.01 -3.98 -0.06 -25.67 16 10 N -0.73 -21.52 4.83 -478.53 -2.31 -23.83 16 11 C 0.16 6.12 4.56 86.38 0.39 6.52 16 12 C -0.06 -2.47 0.54 -52.18 -0.03 -2.49 16 13 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 14 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 15 C 0.04 2.10 4.04 29.85 0.12 2.22 16 16 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16 17 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 19 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.85 6.36 -2.38 -0.02 0.83 16 26 H 0.10 0.72 7.89 -2.39 -0.02 0.70 16 27 H 0.11 1.26 7.89 -2.39 -0.02 1.24 16 28 H 0.06 1.43 7.15 -2.39 -0.02 1.41 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.81 7.64 -2.39 -0.02 1.79 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.41 9.45 3.89 -92.71 -0.36 9.09 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 40 H 0.06 2.07 6.62 -2.39 -0.02 2.06 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 2.09 6.61 -2.39 -0.02 2.08 16 44 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 45 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 46 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 47 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -71.94 363.29 4.24 -67.70 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.57 Total: 17.85 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 6.22 Total: -8.22 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.51 Total: -97.37 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.94 4.24 -67.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.028 kcal (2) G-P(sol) polarization free energy of solvation -71.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds