Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00150 * 2 1 4 4 C 1.52999 * 109.46691 * 270.00045 * 3 2 1 5 5 C 1.53006 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.49663 * 243.74292 * 5 4 3 7 7 C 1.53002 * 117.49643 * 175.08260 * 5 4 3 8 8 C 1.34780 * 120.00367 * 179.97438 * 2 1 3 9 9 O 1.21580 * 120.00232 * 180.02562 * 8 2 1 10 10 N 1.34784 * 119.99657 * 359.97438 * 8 2 1 11 11 C 1.46501 * 119.99881 * 180.02562 * 10 8 2 12 12 C 1.52992 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47083 * 299.99972 * 12 11 10 14 14 C 1.53006 * 109.47279 * 59.99948 * 12 11 10 15 15 C 1.52996 * 109.47096 * 180.02562 * 12 11 10 16 16 C 1.50705 * 109.47264 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99774 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00034 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00393 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47456 * 89.99803 * 20 18 16 22 22 H 1.48497 * 109.47302 * 210.00350 * 20 18 16 23 23 H 1.48501 * 109.46641 * 330.00234 * 20 18 16 24 24 H 1.09002 * 109.47045 * 90.00532 * 1 2 3 25 25 H 1.09000 * 109.47114 * 210.00242 * 1 2 3 26 26 H 1.08997 * 109.47404 * 330.00153 * 1 2 3 27 27 H 1.08993 * 109.47068 * 149.99463 * 3 2 1 28 28 H 1.09000 * 109.46872 * 29.99674 * 3 2 1 29 29 H 1.08993 * 109.47839 * 59.99891 * 4 3 2 30 30 H 1.09000 * 109.47160 * 299.99453 * 4 3 2 31 31 H 1.09002 * 115.55153 * 29.41498 * 5 4 3 32 32 H 1.08998 * 117.49856 * 0.02562 * 6 5 4 33 33 H 1.09000 * 117.49861 * 145.02337 * 6 5 4 34 34 H 1.08993 * 117.50251 * 214.97577 * 7 5 4 35 35 H 1.09003 * 117.49715 * 0.02562 * 7 5 4 36 36 H 0.97003 * 119.99530 * 0.02562 * 10 8 2 37 37 H 1.09005 * 109.46842 * 300.00140 * 11 10 8 38 38 H 1.08991 * 109.46974 * 60.00039 * 11 10 8 39 39 H 1.08996 * 109.47494 * 60.00298 * 13 12 11 40 40 H 1.09000 * 109.46920 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46957 * 299.99736 * 13 12 11 42 42 H 1.08997 * 109.47123 * 59.99789 * 14 12 11 43 43 H 1.09000 * 109.47043 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47120 * 299.99592 * 14 12 11 45 45 H 1.09003 * 109.47083 * 299.99266 * 15 12 11 46 46 H 1.08994 * 109.47619 * 59.99674 * 15 12 11 47 47 H 0.96992 * 120.00766 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4425 6 6 2.5157 4.2557 -2.0431 7 6 3.6709 3.5894 -2.7947 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0016 11 6 2.1976 -3.6032 0.0027 12 6 1.2034 -4.7660 0.0031 13 6 0.3233 -4.6841 1.2520 14 6 0.3242 -4.6858 -1.2466 15 6 1.9683 -6.0910 0.0049 16 6 0.9890 -7.2365 0.0047 17 1 -0.0728 -7.0392 0.0038 18 6 1.4486 -8.5364 0.0067 19 7 0.5941 -9.5361 0.0070 20 14 3.2852 -8.8778 0.0090 21 1 3.7705 -8.9665 1.4096 22 1 3.5511 -10.1611 -0.6893 23 1 3.9941 -7.7769 -0.6916 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1498 1.1384 0.5139 28 1 1.6084 2.0284 0.5138 29 1 1.5002 1.8407 -1.9564 30 1 3.0416 0.9507 -1.9563 31 1 3.8702 3.2017 -0.5858 32 1 1.5096 4.1143 -2.4378 33 1 2.7078 5.2244 -1.5818 34 1 4.6224 4.1200 -2.8275 35 1 3.4245 3.0097 -3.6843 36 1 0.4950 -2.3344 0.0016 37 1 2.8242 -3.6616 -0.8873 38 1 2.8242 -3.6601 0.8927 39 1 -0.2218 -3.7402 1.2512 40 1 -0.3854 -5.5124 1.2520 41 1 0.9496 -4.7413 2.1422 42 1 0.9511 -4.7441 -2.1363 43 1 -0.3844 -5.5141 -1.2460 44 1 -0.2209 -3.7420 -1.2474 45 1 2.5956 -6.1497 -0.8846 46 1 2.5944 -6.1480 0.8953 47 1 0.9173 -10.4505 0.0080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358745809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -20.468024 kcal Electronic energy + Delta-G solvation = -22629.454820 eV Core-core repulsion = 19426.733144 eV Total energy + Delta-G solvation = -3202.721675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19133 -38.04033 -37.28991 -35.49901 -33.70036 -32.14753 -30.70224 -27.81851 -26.90632 -26.54827 -26.16325 -23.81892 -22.65811 -22.14476 -20.71535 -19.80817 -18.62521 -17.52049 -16.82299 -16.30353 -16.17520 -15.35831 -14.75200 -14.55439 -14.24878 -14.12918 -13.73198 -13.63860 -13.28848 -13.23020 -12.80573 -12.57605 -12.44335 -12.24612 -12.21142 -11.85558 -11.62146 -11.34641 -11.23026 -11.10767 -10.99840 -10.61952 -10.60254 -10.45796 -10.13887 -10.02713 -9.95307 -9.73318 -9.49675 -8.98093 -8.93882 -8.52586 -8.49123 -6.03262 -4.00453 2.70675 3.32910 3.33649 3.40862 3.45494 3.51767 4.05170 4.42799 4.46964 4.62962 4.65410 4.83993 4.94127 5.07306 5.17631 5.29582 5.33123 5.35850 5.39374 5.42407 5.46477 5.56703 5.60788 5.65835 5.76677 5.80538 5.86800 6.10092 6.13348 6.14057 6.18849 6.34701 6.44230 6.53389 6.60697 6.75542 6.90909 6.99161 7.02417 7.06307 7.22283 7.38679 7.79130 8.07537 8.53721 8.73897 9.00670 9.59574 11.09446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003002 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.273113 B = 9324.563242 C = 9722.574255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.639 5.639 3 C 0.139 3.861 4 C -0.105 4.105 5 C -0.148 4.148 6 C -0.182 4.182 7 C -0.181 4.181 8 C 0.701 3.299 9 O -0.592 6.592 10 N -0.737 5.737 11 C 0.143 3.857 12 C -0.063 4.063 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.395 0.605 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 25.119 -1.663 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.376 5.376 3 C 0.015 3.985 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.219 4.219 7 C -0.218 4.218 8 C 0.402 3.598 9 O -0.470 6.470 10 N -0.393 5.393 11 C 0.020 3.980 12 C -0.063 4.063 13 C -0.185 4.185 14 C -0.184 4.184 15 C -0.040 4.040 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.544 5.544 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.189 1.189 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.191 24.886 -1.653 24.942 hybrid contribution 0.422 -0.316 -0.044 0.529 sum 0.613 24.571 -1.697 24.637 Atomic orbital electron populations 1.21712 0.80079 1.02926 1.01655 1.47036 1.06196 1.05167 1.79251 1.21273 0.97647 0.83219 0.96348 1.21565 0.99639 0.95203 0.97955 1.22238 1.02848 0.94133 0.97452 1.23056 0.97343 0.96925 1.04603 1.22965 0.98892 1.04151 0.95805 1.15953 0.85376 0.80447 0.77975 1.90900 1.11607 1.86288 1.58207 1.45486 1.09992 1.04876 1.78973 1.21496 0.94355 0.80585 1.01593 1.20694 0.95217 0.94724 0.95689 1.21767 0.99743 1.00079 0.96898 1.21759 0.99730 1.00093 0.96867 1.19592 0.96037 0.91795 0.96583 1.21076 0.94374 0.88986 1.50343 0.90411 1.24999 0.97359 0.96367 0.94746 1.69899 1.34074 0.98975 1.51418 0.86857 0.86630 0.77768 0.78518 1.20380 1.21532 1.18943 0.92810 0.91435 0.90931 0.89811 0.90784 0.91915 0.90956 0.87623 0.88900 0.88992 0.88866 0.88847 0.76819 0.92062 0.92066 0.95219 0.90899 0.93379 0.93394 0.90912 0.95178 0.96317 0.96760 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.25 59.84 0.61 1.25 16 2 N -0.64 -7.35 2.87 -187.35 -0.54 -7.89 16 3 C 0.14 1.38 5.41 -4.04 -0.02 1.36 16 4 C -0.10 -1.00 5.82 -26.73 -0.16 -1.15 16 5 C -0.15 -1.21 5.73 -90.61 -0.52 -1.73 16 6 C -0.18 -1.27 10.18 -26.69 -0.27 -1.54 16 7 C -0.18 -1.40 10.26 -26.69 -0.27 -1.68 16 8 C 0.70 10.91 8.28 -86.91 -0.72 10.19 16 9 O -0.59 -11.51 15.92 5.30 0.08 -11.43 16 10 N -0.74 -10.86 4.82 -65.23 -0.31 -11.17 16 11 C 0.14 2.49 4.56 -4.04 -0.02 2.47 16 12 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 13 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 16 C -0.51 -13.65 8.21 -34.44 -0.28 -13.93 16 17 H 0.08 2.20 5.92 -52.49 -0.31 1.88 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 20 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.53 6.36 -51.93 -0.33 0.19 16 26 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 27 H 0.08 0.99 7.42 -51.93 -0.39 0.60 16 28 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 29 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.39 4.96 3.89 -40.82 -0.16 4.80 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 44 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -31.84 366.38 -8.85 -40.69 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.39 Total: 2.02 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.32 Total: -8.19 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.08 Total: -45.55 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.84 -8.85 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358745809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.222 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds