Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00150 * 2 1 4 4 C 1.52999 * 109.46691 * 270.00045 * 3 2 1 5 5 C 1.53006 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.49663 * 243.74292 * 5 4 3 7 7 C 1.53002 * 117.49643 * 175.08260 * 5 4 3 8 8 C 1.34780 * 120.00367 * 179.97438 * 2 1 3 9 9 O 1.21580 * 120.00232 * 180.02562 * 8 2 1 10 10 N 1.34784 * 119.99657 * 359.97438 * 8 2 1 11 11 C 1.46501 * 119.99881 * 180.02562 * 10 8 2 12 12 C 1.52992 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47083 * 299.99972 * 12 11 10 14 14 C 1.53006 * 109.47279 * 59.99948 * 12 11 10 15 15 C 1.52996 * 109.47096 * 180.02562 * 12 11 10 16 16 C 1.50705 * 109.47264 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99774 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00034 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00393 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47456 * 89.99803 * 20 18 16 22 22 H 1.48497 * 109.47302 * 210.00350 * 20 18 16 23 23 H 1.48501 * 109.46641 * 330.00234 * 20 18 16 24 24 H 1.09002 * 109.47045 * 90.00532 * 1 2 3 25 25 H 1.09000 * 109.47114 * 210.00242 * 1 2 3 26 26 H 1.08997 * 109.47404 * 330.00153 * 1 2 3 27 27 H 1.08993 * 109.47068 * 149.99463 * 3 2 1 28 28 H 1.09000 * 109.46872 * 29.99674 * 3 2 1 29 29 H 1.08993 * 109.47839 * 59.99891 * 4 3 2 30 30 H 1.09000 * 109.47160 * 299.99453 * 4 3 2 31 31 H 1.09002 * 115.55153 * 29.41498 * 5 4 3 32 32 H 1.08998 * 117.49856 * 0.02562 * 6 5 4 33 33 H 1.09000 * 117.49861 * 145.02337 * 6 5 4 34 34 H 1.08993 * 117.50251 * 214.97577 * 7 5 4 35 35 H 1.09003 * 117.49715 * 0.02562 * 7 5 4 36 36 H 0.97003 * 119.99530 * 0.02562 * 10 8 2 37 37 H 1.09005 * 109.46842 * 300.00140 * 11 10 8 38 38 H 1.08991 * 109.46974 * 60.00039 * 11 10 8 39 39 H 1.08996 * 109.47494 * 60.00298 * 13 12 11 40 40 H 1.09000 * 109.46920 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46957 * 299.99736 * 13 12 11 42 42 H 1.08997 * 109.47123 * 59.99789 * 14 12 11 43 43 H 1.09000 * 109.47043 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47120 * 299.99592 * 14 12 11 45 45 H 1.09003 * 109.47083 * 299.99266 * 15 12 11 46 46 H 1.08994 * 109.47619 * 59.99674 * 15 12 11 47 47 H 0.96992 * 120.00766 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4425 6 6 2.5157 4.2557 -2.0431 7 6 3.6709 3.5894 -2.7947 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0016 11 6 2.1976 -3.6032 0.0027 12 6 1.2034 -4.7660 0.0031 13 6 0.3233 -4.6841 1.2520 14 6 0.3242 -4.6858 -1.2466 15 6 1.9683 -6.0910 0.0049 16 6 0.9890 -7.2365 0.0047 17 1 -0.0728 -7.0392 0.0038 18 6 1.4486 -8.5364 0.0067 19 7 0.5941 -9.5361 0.0070 20 14 3.2852 -8.8778 0.0090 21 1 3.7705 -8.9665 1.4096 22 1 3.5511 -10.1611 -0.6893 23 1 3.9941 -7.7769 -0.6916 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1498 1.1384 0.5139 28 1 1.6084 2.0284 0.5138 29 1 1.5002 1.8407 -1.9564 30 1 3.0416 0.9507 -1.9563 31 1 3.8702 3.2017 -0.5858 32 1 1.5096 4.1143 -2.4378 33 1 2.7078 5.2244 -1.5818 34 1 4.6224 4.1200 -2.8275 35 1 3.4245 3.0097 -3.6843 36 1 0.4950 -2.3344 0.0016 37 1 2.8242 -3.6616 -0.8873 38 1 2.8242 -3.6601 0.8927 39 1 -0.2218 -3.7402 1.2512 40 1 -0.3854 -5.5124 1.2520 41 1 0.9496 -4.7413 2.1422 42 1 0.9511 -4.7441 -2.1363 43 1 -0.3844 -5.5141 -1.2460 44 1 -0.2209 -3.7420 -1.2474 45 1 2.5956 -6.1497 -0.8846 46 1 2.5944 -6.1480 0.8953 47 1 0.9173 -10.4505 0.0080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358745809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -38.823018 kcal Electronic energy + Delta-G solvation = -22630.250752 eV Core-core repulsion = 19426.733144 eV Total energy + Delta-G solvation = -3203.517608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34047 -39.07053 -38.39901 -36.51370 -35.24259 -34.01370 -31.57387 -29.68649 -27.98941 -27.84718 -27.32782 -25.01014 -23.80355 -23.19303 -21.37630 -20.99473 -19.92588 -18.93599 -18.71857 -17.41841 -17.00559 -16.32437 -16.25363 -15.67179 -15.57310 -15.40198 -15.07290 -14.85480 -14.38281 -14.32786 -14.17266 -14.12813 -13.73792 -13.32089 -13.06367 -12.92778 -12.83973 -12.60462 -12.42772 -12.30409 -12.28826 -12.15210 -12.06709 -11.77162 -11.51569 -11.35972 -11.22305 -11.08713 -10.90287 -10.78582 -10.70038 -10.16820 -9.47592 -8.22036 -6.21893 1.35964 1.38900 1.49044 1.68978 2.15477 2.39420 2.91037 3.04148 3.13392 3.78348 3.92111 4.01108 4.03005 4.06635 4.15607 4.17916 4.31913 4.39629 4.57922 4.62155 4.64454 4.71611 4.74661 4.76633 4.80828 4.90949 4.95092 5.00768 5.03765 5.05973 5.09447 5.10989 5.28147 5.29706 5.36609 5.40557 5.40843 5.51163 5.56984 5.60905 5.69650 5.76852 5.94756 6.38517 6.84600 6.98992 7.40837 7.57729 8.93423 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003002 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.273113 B = 9324.563242 C = 9722.574255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.632 5.632 3 C 0.137 3.863 4 C -0.095 4.095 5 C -0.159 4.159 6 C -0.166 4.166 7 C -0.192 4.192 8 C 0.695 3.305 9 O -0.638 6.638 10 N -0.727 5.727 11 C 0.157 3.843 12 C -0.057 4.057 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.004 4.004 16 C -0.500 4.500 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.933 3.067 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.408 0.592 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.014 0.986 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 27.966 -1.548 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.368 5.368 3 C 0.014 3.986 4 C -0.134 4.134 5 C -0.178 4.178 6 C -0.202 4.202 7 C -0.229 4.229 8 C 0.396 3.604 9 O -0.520 6.520 10 N -0.385 5.385 11 C 0.033 3.967 12 C -0.057 4.057 13 C -0.180 4.180 14 C -0.179 4.179 15 C -0.042 4.042 16 C -0.538 4.538 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.340 27.781 -1.540 27.826 hybrid contribution 0.493 -1.115 -0.090 1.223 sum 0.153 26.666 -1.629 26.716 Atomic orbital electron populations 1.22012 0.77449 1.04625 1.02988 1.47126 1.07828 1.04181 1.77697 1.21410 0.97240 0.83238 0.96709 1.21428 0.99695 0.94909 0.97331 1.22206 1.03579 0.94184 0.97811 1.23125 0.97239 0.96677 1.03202 1.23040 0.99882 1.04563 0.95409 1.16163 0.84941 0.81453 0.77817 1.90870 1.13818 1.87063 1.60208 1.45203 1.10385 1.03893 1.79005 1.21112 0.93775 0.81289 1.00565 1.20551 0.95315 0.92942 0.96935 1.21691 0.99149 1.01068 0.96042 1.21682 0.99136 1.01055 0.96031 1.19571 0.95529 0.92968 0.96132 1.21351 0.94161 0.90095 1.48195 0.92790 1.25812 1.01608 0.96487 0.95119 1.70031 1.36095 0.99400 1.53695 0.85917 0.81648 0.77806 0.78834 1.19721 1.21446 1.17699 0.91604 0.90997 0.88084 0.92147 0.87386 0.90776 0.94365 0.87566 0.88149 0.87703 0.88314 0.89356 0.75318 0.93300 0.93103 0.91475 0.93389 0.93699 0.93839 0.93380 0.91491 0.96784 0.96862 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.25 127.77 1.31 2.16 16 2 N -0.63 -13.04 2.87 -864.92 -2.49 -15.52 16 3 C 0.14 2.47 5.41 86.38 0.47 2.93 16 4 C -0.09 -1.68 5.82 30.60 0.18 -1.50 16 5 C -0.16 -2.36 5.73 -10.79 -0.06 -2.43 16 6 C -0.17 -1.86 10.18 30.62 0.31 -1.55 16 7 C -0.19 -2.73 10.26 30.62 0.31 -2.41 16 8 C 0.70 20.69 8.28 179.05 1.48 22.17 16 9 O -0.64 -24.86 15.92 -3.97 -0.06 -24.92 16 10 N -0.73 -19.94 4.82 -478.54 -2.31 -22.25 16 11 C 0.16 5.29 4.56 86.38 0.39 5.69 16 12 C -0.06 -2.05 0.54 -52.18 -0.03 -2.07 16 13 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 14 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 15 C 0.00 -0.19 3.11 29.85 0.09 -0.09 16 16 C -0.50 -27.18 8.21 25.60 0.21 -26.97 16 17 H 0.05 3.14 5.92 -2.91 -0.02 3.12 16 18 C 0.01 0.34 5.47 84.65 0.46 0.81 16 19 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 20 Si 0.93 44.78 27.47 68.60 1.88 46.67 16 21 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.25 -11.56 6.54 99.48 0.65 -10.90 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.82 6.36 -2.39 -0.02 0.80 16 26 H 0.10 0.69 7.89 -2.39 -0.02 0.67 16 27 H 0.06 1.39 7.42 -2.39 -0.02 1.38 16 28 H 0.11 1.23 7.89 -2.39 -0.02 1.21 16 29 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.55 8.08 -2.39 -0.02 1.54 16 32 H 0.10 0.99 8.03 -2.39 -0.02 0.98 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.41 8.89 3.89 -92.71 -0.36 8.52 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 40 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 44 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 45 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 46 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 47 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -71.02 366.38 4.13 -66.89 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.51 Total: 17.76 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 6.29 Total: -10.27 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.49 Total: -96.13 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.06 Total: -24.92 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -71.02 4.13 -66.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358745809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.066 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds