Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47343 * 2 1 4 4 C 1.53002 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46866 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.46863 * 55.00097 * 5 4 3 7 7 C 1.53001 * 109.46642 * 175.00404 * 5 4 3 8 8 N 1.46499 * 109.47147 * 294.99923 * 5 4 3 9 9 C 1.46493 * 120.00057 * 300.00350 * 8 5 4 10 10 C 1.34775 * 119.99964 * 120.00072 * 8 5 4 11 11 O 1.21591 * 119.99608 * 4.85950 * 10 8 5 12 12 N 1.34769 * 120.00304 * 184.86179 * 10 8 5 13 13 C 1.46501 * 120.00069 * 185.02914 * 12 10 8 14 14 C 1.53003 * 109.47237 * 184.99271 * 13 12 10 15 15 C 1.50701 * 115.54810 * 54.06235 * 14 13 12 16 16 H 1.08000 * 120.00061 * 215.59009 * 15 14 13 17 17 C 1.37883 * 120.00055 * 35.31624 * 15 14 13 18 18 N 1.31515 * 119.99573 * 355.89515 * 17 15 14 19 19 Si 1.86798 * 120.00000 * 175.89490 * 17 15 14 20 20 H 1.48496 * 109.47159 * 60.00252 * 19 17 15 21 21 H 1.48502 * 109.46759 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47285 * 299.99771 * 19 17 15 23 23 C 1.52998 * 117.50318 * 199.73388 * 14 13 12 24 24 C 1.52995 * 117.50020 * 268.39728 * 14 13 12 25 25 H 1.08994 * 109.47127 * 300.00056 * 1 2 3 26 26 H 1.08996 * 109.46843 * 60.00211 * 1 2 3 27 27 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47404 * 239.99796 * 2 1 3 29 29 H 1.09008 * 109.47065 * 120.00193 * 2 1 3 30 30 H 1.09007 * 109.47409 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47075 * 300.00243 * 3 2 1 32 32 H 1.08994 * 109.46968 * 60.00173 * 4 3 2 33 33 H 1.08996 * 109.47216 * 299.99887 * 4 3 2 34 34 H 1.08995 * 109.47742 * 60.00231 * 7 5 4 35 35 H 1.09000 * 109.46447 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47041 * 299.99199 * 7 5 4 37 37 H 1.09000 * 109.47263 * 274.19289 * 9 8 5 38 38 H 1.08997 * 109.47752 * 34.19461 * 9 8 5 39 39 H 1.09005 * 109.47046 * 154.19084 * 9 8 5 40 40 H 0.97006 * 119.99958 * 5.03155 * 12 10 8 41 41 H 1.08997 * 109.47070 * 64.99835 * 13 12 10 42 42 H 1.08998 * 109.47009 * 304.99068 * 13 12 10 43 43 H 0.96996 * 119.99483 * 184.99303 * 18 17 15 44 44 H 1.09001 * 117.50127 * 215.00398 * 23 14 13 45 45 H 1.09000 * 117.49678 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49971 * 359.97129 * 24 14 13 47 47 H 1.09006 * 117.50209 * 144.97269 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4244 0.8413 7 6 5.6049 2.8867 0.1263 8 7 3.6931 3.5392 -1.2524 9 6 4.1550 2.9999 -2.5337 10 6 2.9120 4.6372 -1.2257 11 8 2.6014 5.1365 -0.1614 12 7 2.4752 5.1817 -2.3785 13 6 1.7191 6.4363 -2.3558 14 6 1.2392 6.7683 -3.7702 15 6 0.4555 5.6829 -4.4621 16 1 0.5611 5.5355 -5.5267 17 6 -0.3922 4.8742 -3.7349 18 7 -0.4563 4.9964 -2.4270 19 14 -1.4495 3.6053 -4.6076 20 1 -0.5764 2.6486 -5.3338 21 1 -2.2665 2.8705 -3.6086 22 1 -2.3466 4.2885 -5.5738 23 6 0.8464 8.2181 -4.0609 24 6 2.1450 7.6466 -4.6355 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.0399 2.3473 -0.7150 35 1 5.9681 3.9144 0.1263 36 1 5.8929 2.4000 1.0581 37 1 5.1409 3.4039 -2.7637 38 1 4.2133 1.9133 -2.4708 39 1 3.4545 3.2812 -3.3200 40 1 2.6615 4.7429 -3.2233 41 1 2.3592 7.2397 -1.9914 42 1 0.8583 6.3298 -1.6957 43 1 -0.9971 4.3804 -1.9084 44 1 0.0210 8.3869 -4.7526 45 1 0.9302 8.9356 -3.2446 46 1 3.0826 7.9884 -4.1971 47 1 2.1743 7.4393 -5.7053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359074080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -18.375959 kcal Electronic energy + Delta-G solvation = -24002.981909 eV Core-core repulsion = 20800.350953 eV Total energy + Delta-G solvation = -3202.630956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.54989 -37.14403 -36.21079 -34.48410 -33.13907 -32.17185 -31.20161 -28.73588 -26.54511 -25.82732 -25.10742 -23.89103 -21.27702 -20.96126 -20.63366 -19.21936 -18.61570 -17.65573 -16.06770 -15.89714 -15.27657 -14.88595 -14.65046 -14.09978 -13.98809 -13.58471 -13.37862 -13.27008 -12.87359 -12.62017 -12.48523 -12.23886 -12.21621 -12.00864 -11.77600 -11.55922 -11.34779 -11.14805 -11.04452 -10.90735 -10.72145 -10.52293 -10.49353 -10.35518 -10.30932 -10.19723 -9.65091 -9.13801 -8.93664 -8.79549 -8.25064 -8.16228 -7.55781 -5.92639 -4.14420 3.23000 3.31216 3.32123 3.40984 4.17246 4.32028 4.72270 4.87023 5.11750 5.13775 5.19642 5.34113 5.43267 5.43919 5.48185 5.52335 5.60942 5.77023 5.78830 5.85185 5.92961 5.97470 6.01000 6.06005 6.10492 6.14431 6.29810 6.31014 6.35557 6.40374 6.53052 6.59881 6.64881 6.67864 6.79033 6.92370 7.04249 7.20984 7.29429 7.62363 7.74679 7.88813 8.07062 8.36601 8.81750 9.05158 9.48449 9.62553 10.94688 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.006881 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.119008 B = 4068.147370 C = 5493.168865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.127 4.127 5 C 0.154 3.846 6 H 0.099 0.901 7 C -0.158 4.158 8 N -0.634 5.634 9 C 0.083 3.917 10 C 0.704 3.296 11 O -0.605 6.605 12 N -0.700 5.700 13 C 0.183 3.817 14 C 0.038 3.962 15 C -0.500 4.500 16 H 0.058 0.942 17 C 0.077 3.923 18 N -0.858 5.858 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.392 0.608 41 H 0.011 0.989 42 H 0.114 0.886 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 -8.485 2.773 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.165 4.165 5 C 0.049 3.951 6 H 0.117 0.883 7 C -0.216 4.216 8 N -0.373 5.373 9 C -0.061 4.061 10 C 0.406 3.594 11 O -0.485 6.485 12 N -0.352 5.352 13 C 0.059 3.941 14 C 0.037 3.963 15 C -0.537 4.537 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.494 5.494 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.238 4.238 24 C -0.250 4.250 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.228 0.772 41 H 0.030 0.970 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.112 -8.113 3.702 12.055 hybrid contribution -0.500 -0.900 -1.094 1.502 sum 7.611 -9.012 2.608 12.081 Atomic orbital electron populations 1.21767 0.96041 1.00928 1.02316 1.21501 0.95862 0.97250 1.01104 1.21554 0.94743 0.96018 1.03223 1.21968 0.96415 0.96487 1.01674 1.20820 0.93888 0.92616 0.87765 0.88259 1.22124 0.96013 1.02075 1.01422 1.46965 1.54467 1.29819 1.06047 1.21578 0.99315 0.99110 0.86124 1.15858 0.78777 0.79779 0.85006 1.90806 1.63635 1.64328 1.29747 1.44915 1.57021 1.26805 1.06441 1.20892 0.94773 0.80959 0.97499 1.19248 0.95781 0.89216 0.92060 1.20416 1.23743 1.15540 0.94000 0.92356 1.24984 0.96095 0.96949 0.94828 1.69873 1.38937 1.36036 1.04523 0.86699 0.80809 0.81367 0.79359 1.20341 1.21253 1.20238 1.22934 0.97476 1.00656 1.02718 1.22941 0.93262 1.09681 0.99120 0.92756 0.92526 0.93300 0.92557 0.92630 0.92019 0.91255 0.92020 0.91526 0.92762 0.92424 0.92073 0.93567 0.91827 0.91058 0.77211 0.97043 0.86842 0.92692 0.90293 0.91500 0.91435 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.74 5.10 -26.73 -0.14 -1.88 16 4 C -0.13 -1.60 4.64 -26.73 -0.12 -1.72 16 5 C 0.15 2.25 2.64 -67.93 -0.18 2.07 16 6 H 0.10 1.72 6.91 -51.93 -0.36 1.36 16 7 C -0.16 -1.86 9.19 37.16 0.34 -1.52 16 8 N -0.63 -10.71 2.21 -179.67 -0.40 -11.10 16 9 C 0.08 1.14 9.52 59.84 0.57 1.71 16 10 C 0.70 15.28 8.27 -86.93 -0.72 14.57 16 11 O -0.61 -15.33 15.66 5.29 0.08 -15.25 16 12 N -0.70 -15.42 4.90 -65.23 -0.32 -15.74 16 13 C 0.18 4.42 4.62 -4.04 -0.02 4.41 16 14 C 0.04 0.90 2.04 -155.66 -0.32 0.58 16 15 C -0.50 -12.72 8.43 -34.44 -0.29 -13.01 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.08 1.97 5.31 -17.82 -0.09 1.87 16 18 N -0.86 -23.03 10.11 55.43 0.56 -22.47 16 19 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.20 -4.40 9.96 -26.69 -0.27 -4.67 16 24 C -0.21 -4.46 9.92 -26.70 -0.26 -4.72 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 32 H 0.06 0.72 6.48 -51.93 -0.34 0.38 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 39 H 0.07 1.06 5.94 -51.93 -0.31 0.75 16 40 H 0.39 8.21 5.68 -40.82 -0.23 7.97 16 41 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 42 H 0.11 3.16 5.90 -51.93 -0.31 2.85 16 43 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -28.55 370.12 -9.36 -37.91 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.56 Total: 11.45 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.29 Total: -5.61 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.16 Total: -49.32 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.55 -9.36 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359074080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.537 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds