Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47343 * 2 1 4 4 C 1.53002 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46866 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.46863 * 55.00097 * 5 4 3 7 7 C 1.53001 * 109.46642 * 175.00404 * 5 4 3 8 8 N 1.46499 * 109.47147 * 294.99923 * 5 4 3 9 9 C 1.46493 * 120.00057 * 300.00350 * 8 5 4 10 10 C 1.34775 * 119.99964 * 120.00072 * 8 5 4 11 11 O 1.21591 * 119.99608 * 4.85950 * 10 8 5 12 12 N 1.34769 * 120.00304 * 184.86179 * 10 8 5 13 13 C 1.46501 * 120.00069 * 185.02914 * 12 10 8 14 14 C 1.53003 * 109.47237 * 184.99271 * 13 12 10 15 15 C 1.50701 * 115.54810 * 54.06235 * 14 13 12 16 16 H 1.08000 * 120.00061 * 215.59009 * 15 14 13 17 17 C 1.37883 * 120.00055 * 35.31624 * 15 14 13 18 18 N 1.31515 * 119.99573 * 355.89515 * 17 15 14 19 19 Si 1.86798 * 120.00000 * 175.89490 * 17 15 14 20 20 H 1.48496 * 109.47159 * 60.00252 * 19 17 15 21 21 H 1.48502 * 109.46759 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47285 * 299.99771 * 19 17 15 23 23 C 1.52998 * 117.50318 * 199.73388 * 14 13 12 24 24 C 1.52995 * 117.50020 * 268.39728 * 14 13 12 25 25 H 1.08994 * 109.47127 * 300.00056 * 1 2 3 26 26 H 1.08996 * 109.46843 * 60.00211 * 1 2 3 27 27 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47404 * 239.99796 * 2 1 3 29 29 H 1.09008 * 109.47065 * 120.00193 * 2 1 3 30 30 H 1.09007 * 109.47409 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47075 * 300.00243 * 3 2 1 32 32 H 1.08994 * 109.46968 * 60.00173 * 4 3 2 33 33 H 1.08996 * 109.47216 * 299.99887 * 4 3 2 34 34 H 1.08995 * 109.47742 * 60.00231 * 7 5 4 35 35 H 1.09000 * 109.46447 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47041 * 299.99199 * 7 5 4 37 37 H 1.09000 * 109.47263 * 274.19289 * 9 8 5 38 38 H 1.08997 * 109.47752 * 34.19461 * 9 8 5 39 39 H 1.09005 * 109.47046 * 154.19084 * 9 8 5 40 40 H 0.97006 * 119.99958 * 5.03155 * 12 10 8 41 41 H 1.08997 * 109.47070 * 64.99835 * 13 12 10 42 42 H 1.08998 * 109.47009 * 304.99068 * 13 12 10 43 43 H 0.96996 * 119.99483 * 184.99303 * 18 17 15 44 44 H 1.09001 * 117.50127 * 215.00398 * 23 14 13 45 45 H 1.09000 * 117.49678 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49971 * 359.97129 * 24 14 13 47 47 H 1.09006 * 117.50209 * 144.97269 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4244 0.8413 7 6 5.6049 2.8867 0.1263 8 7 3.6931 3.5392 -1.2524 9 6 4.1550 2.9999 -2.5337 10 6 2.9120 4.6372 -1.2257 11 8 2.6014 5.1365 -0.1614 12 7 2.4752 5.1817 -2.3785 13 6 1.7191 6.4363 -2.3558 14 6 1.2392 6.7683 -3.7702 15 6 0.4555 5.6829 -4.4621 16 1 0.5611 5.5355 -5.5267 17 6 -0.3922 4.8742 -3.7349 18 7 -0.4563 4.9964 -2.4270 19 14 -1.4495 3.6053 -4.6076 20 1 -0.5764 2.6486 -5.3338 21 1 -2.2665 2.8705 -3.6086 22 1 -2.3466 4.2885 -5.5738 23 6 0.8464 8.2181 -4.0609 24 6 2.1450 7.6466 -4.6355 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.0399 2.3473 -0.7150 35 1 5.9681 3.9144 0.1263 36 1 5.8929 2.4000 1.0581 37 1 5.1409 3.4039 -2.7637 38 1 4.2133 1.9133 -2.4708 39 1 3.4545 3.2812 -3.3200 40 1 2.6615 4.7429 -3.2233 41 1 2.3592 7.2397 -1.9914 42 1 0.8583 6.3298 -1.6957 43 1 -0.9971 4.3804 -1.9084 44 1 0.0210 8.3869 -4.7526 45 1 0.9302 8.9356 -3.2446 46 1 3.0826 7.9884 -4.1971 47 1 2.1743 7.4393 -5.7053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359074080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = -32.719100 kcal Electronic energy + Delta-G solvation = -24003.603875 eV Core-core repulsion = 20800.350953 eV Total energy + Delta-G solvation = -3203.252922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10318 -38.78465 -37.74036 -35.75599 -34.81833 -34.11568 -32.51254 -29.78840 -27.96705 -27.59305 -26.89684 -25.00932 -22.98739 -22.24337 -21.85324 -21.10011 -20.07561 -19.25619 -17.89843 -17.29861 -16.80006 -16.58483 -16.11917 -15.71416 -15.22462 -15.09403 -14.87090 -14.65261 -14.24834 -14.15411 -13.73929 -13.53960 -13.33672 -13.28533 -13.24860 -13.13728 -12.88199 -12.77422 -12.57780 -12.31548 -12.20170 -12.02282 -11.99580 -11.64869 -11.49599 -11.43930 -11.42755 -10.96514 -10.82806 -10.64072 -10.13963 -9.77880 -9.16580 -7.89386 -6.17059 1.40138 1.43876 1.49702 1.96987 2.40826 2.49359 3.02651 3.39654 3.67459 3.75766 4.02335 4.10985 4.26865 4.28460 4.32706 4.39341 4.42363 4.55974 4.58042 4.68587 4.75704 4.79251 4.81951 4.83917 4.90320 4.93031 4.95174 4.97007 5.06478 5.09297 5.12046 5.19932 5.25023 5.32145 5.37817 5.41428 5.50919 5.54534 5.62387 5.85975 6.01763 6.06282 6.24431 6.40374 6.84065 7.38027 7.47761 7.93272 8.93939 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.006881 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.119008 B = 4068.147370 C = 5493.168865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.115 4.115 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.063 0.937 7 C -0.147 4.147 8 N -0.627 5.627 9 C 0.079 3.921 10 C 0.697 3.303 11 O -0.651 6.651 12 N -0.697 5.697 13 C 0.196 3.804 14 C 0.007 3.993 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.037 3.963 18 N -0.882 5.882 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.276 1.276 23 C -0.200 4.200 24 C -0.184 4.184 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.398 0.602 41 H 0.007 0.993 42 H 0.074 0.926 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 -10.546 1.678 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.153 4.153 4 C -0.154 4.154 5 C 0.042 3.958 6 H 0.081 0.919 7 C -0.205 4.205 8 N -0.365 5.365 9 C -0.064 4.064 10 C 0.399 3.601 11 O -0.535 6.535 12 N -0.350 5.350 13 C 0.071 3.929 14 C 0.007 3.993 15 C -0.541 4.541 16 H 0.076 0.924 17 C -0.165 4.165 18 N -0.518 5.518 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.201 1.201 23 C -0.239 4.239 24 C -0.221 4.221 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.234 0.766 41 H 0.025 0.975 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.141 -10.208 2.566 14.616 hybrid contribution -1.117 -0.228 -0.738 1.357 sum 9.025 -10.436 1.829 13.918 Atomic orbital electron populations 1.21791 0.96938 1.01843 1.00695 1.21472 0.95072 0.95623 1.02837 1.21490 0.96750 0.97046 0.99985 1.21926 0.94293 0.95171 1.04014 1.21043 0.96054 0.93190 0.85499 0.91916 1.22040 0.93073 1.01783 1.03649 1.47033 1.52983 1.28222 1.08260 1.21798 0.99794 1.00853 0.83954 1.16104 0.79140 0.80806 0.84086 1.90763 1.65438 1.66080 1.31220 1.44764 1.56906 1.26413 1.06894 1.20519 0.93367 0.81855 0.97197 1.19286 0.97915 0.89860 0.92270 1.20612 1.23682 1.15894 0.93957 0.92355 1.25572 0.97062 0.98703 0.95168 1.70090 1.39576 1.36496 1.05631 0.85845 0.79416 0.79610 0.78144 1.19063 1.22194 1.20095 1.22955 0.98406 0.99500 1.03038 1.22926 0.93184 1.06736 0.99228 0.93516 0.95083 0.91045 0.91244 0.90217 0.94532 0.95364 0.89944 0.88617 0.90589 0.94010 0.89669 0.91270 0.88982 0.92464 0.76568 0.97481 0.90838 0.93784 0.90417 0.90773 0.89851 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.11 -2.62 5.93 30.59 0.18 -2.44 16 3 C -0.11 -3.40 5.10 30.59 0.16 -3.24 16 4 C -0.12 -2.64 4.64 30.60 0.14 -2.50 16 5 C 0.15 4.15 2.64 45.00 0.12 4.27 16 6 H 0.06 2.26 6.91 -2.39 -0.02 2.24 16 7 C -0.15 -3.07 9.19 71.98 0.66 -2.41 16 8 N -0.63 -21.06 2.21 -840.63 -1.86 -22.92 16 9 C 0.08 2.00 9.52 127.77 1.22 3.22 16 10 C 0.70 31.35 8.27 179.06 1.48 32.84 16 11 O -0.65 -34.94 15.66 -4.00 -0.06 -35.00 16 12 N -0.70 -31.58 4.90 -478.54 -2.34 -33.92 16 13 C 0.20 9.80 4.62 86.38 0.40 10.20 16 14 C 0.01 0.35 2.04 -52.93 -0.11 0.25 16 15 C -0.50 -25.68 8.43 25.60 0.22 -25.47 16 16 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 17 C 0.04 1.94 5.31 84.66 0.45 2.39 16 18 N -0.88 -49.29 10.11 21.45 0.22 -49.07 16 19 Si 0.94 42.00 29.54 68.60 2.03 44.02 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.20 -8.73 9.96 30.62 0.30 -8.43 16 24 C -0.18 -7.38 9.92 30.62 0.30 -7.08 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.03 1.05 7.75 -2.39 -0.02 1.03 16 32 H 0.08 1.58 6.48 -2.39 -0.02 1.56 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.82 6.35 -2.39 -0.02 1.81 16 39 H 0.06 1.63 5.94 -2.38 -0.01 1.62 16 40 H 0.40 16.82 5.68 -92.70 -0.53 16.29 16 41 H 0.01 0.35 8.09 -2.39 -0.02 0.33 16 42 H 0.07 4.32 5.90 -2.39 -0.01 4.31 16 43 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 44 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 45 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -65.22 370.12 4.61 -60.61 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.40 Total: 38.00 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.23 Total: -1.72 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.99 Total: -105.91 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.06 Total: -35.00 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.22 4.61 -60.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359074080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.889 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds