Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.52997 * 109.47102 * 175.00036 * 3 2 1 5 5 C 1.53003 * 109.46797 * 184.99964 * 4 3 2 6 6 N 1.46498 * 109.47251 * 295.00186 * 3 2 1 7 7 C 1.46505 * 119.99877 * 299.99976 * 6 3 2 8 8 C 1.52997 * 109.46850 * 263.40445 * 7 6 3 9 9 C 1.34775 * 120.00235 * 119.99789 * 6 3 2 10 10 O 1.21588 * 119.99730 * 355.17316 * 9 6 3 11 11 N 1.34774 * 120.00112 * 174.90149 * 9 6 3 12 12 C 1.46498 * 120.00220 * 184.77695 * 11 9 6 13 13 C 1.52996 * 109.47342 * 175.00782 * 12 11 9 14 14 C 1.50700 * 115.55241 * 305.85933 * 13 12 11 15 15 H 1.08007 * 119.99720 * 144.21616 * 14 13 12 16 16 C 1.37868 * 120.00106 * 324.22493 * 14 13 12 17 17 N 1.31520 * 120.00071 * 2.33759 * 16 14 13 18 18 Si 1.86804 * 120.00289 * 182.33969 * 16 14 13 19 19 H 1.48498 * 109.47216 * 89.99756 * 18 16 14 20 20 H 1.48496 * 109.47394 * 210.00211 * 18 16 14 21 21 H 1.48503 * 109.46857 * 330.00013 * 18 16 14 22 22 C 1.53003 * 117.50038 * 160.18660 * 13 12 11 23 23 C 1.53007 * 117.49590 * 91.52938 * 13 12 11 24 24 H 1.08998 * 109.46693 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46773 * 299.99659 * 1 2 3 26 26 H 1.08998 * 109.46758 * 59.99862 * 1 2 3 27 27 H 1.09002 * 109.47110 * 240.00052 * 2 1 3 28 28 H 1.08998 * 109.46758 * 120.00138 * 2 1 3 29 29 H 1.09001 * 109.46752 * 54.99908 * 3 2 1 30 30 H 1.09000 * 109.47149 * 305.00059 * 4 3 2 31 31 H 1.08991 * 109.47030 * 64.99993 * 4 3 2 32 32 H 1.08993 * 109.47626 * 300.00180 * 5 4 3 33 33 H 1.08999 * 109.46772 * 60.00462 * 5 4 3 34 34 H 1.09002 * 109.46973 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46779 * 23.40406 * 7 6 3 36 36 H 1.09003 * 109.47002 * 143.40533 * 7 6 3 37 37 H 1.09004 * 109.47151 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47062 * 299.99535 * 8 7 6 39 39 H 1.08997 * 109.47168 * 59.99810 * 8 7 6 40 40 H 0.96997 * 120.00069 * 4.78590 * 11 9 6 41 41 H 1.09001 * 109.47551 * 295.01513 * 12 11 9 42 42 H 1.09010 * 109.46529 * 55.01302 * 12 11 9 43 43 H 0.96998 * 120.00239 * 185.00849 * 17 16 14 44 44 H 1.09000 * 117.50082 * 0.02562 * 22 13 12 45 45 H 1.08997 * 117.49820 * 145.02155 * 22 13 12 46 46 H 1.08999 * 117.49705 * 214.97679 * 23 13 12 47 47 H 1.08993 * 117.49580 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6525 2.0975 -1.2518 7 6 2.1140 1.5590 -2.5337 8 6 3.3609 2.3205 -2.9876 9 6 0.8715 3.1955 -1.2241 10 8 0.4164 3.5914 -0.1683 11 7 0.5993 3.8578 -2.3659 12 6 -0.1619 5.1089 -2.3234 13 6 -0.2240 5.7160 -3.7264 14 6 1.1058 5.9225 -4.4047 15 1 1.1959 5.7789 -5.4714 16 6 2.2073 6.2945 -3.6637 17 7 2.1086 6.4244 -2.3587 18 14 3.8400 6.6141 -4.5133 19 1 3.9256 8.0456 -4.8987 20 1 4.9529 6.2833 -3.5874 21 1 3.9394 5.7673 -5.7291 22 6 -1.3256 6.7406 -4.0046 23 6 -1.4156 5.3367 -4.6081 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6054 1.9815 0.8418 30 1 3.8571 0.8800 1.0113 31 1 4.0029 0.9836 -0.7596 32 1 3.7723 3.4493 -0.6344 33 1 3.6264 3.3456 1.1365 34 1 5.1508 2.8863 0.3411 35 1 2.3555 0.5024 -2.4181 36 1 1.3273 1.6724 -3.2797 37 1 3.7040 1.9202 -3.9416 38 1 3.1193 3.3772 -3.1032 39 1 4.1475 2.2072 -2.2416 40 1 0.9072 3.5062 -3.2158 41 1 -1.1730 4.9073 -1.9696 42 1 0.3273 5.8089 -1.6459 43 1 2.8622 6.7559 -1.8459 44 1 -2.0059 6.9825 -3.1881 45 1 -1.0887 7.5638 -4.6786 46 1 -1.2377 5.2370 -5.6788 47 1 -2.1548 4.6544 -4.1887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359088034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = -16.054812 kcal Electronic energy + Delta-G solvation = -24708.680210 eV Core-core repulsion = 21506.149906 eV Total energy + Delta-G solvation = -3202.530304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.76944 -37.18601 -36.14590 -33.88105 -32.36494 -32.03291 -31.86300 -29.70762 -26.50087 -25.65478 -24.82685 -23.03392 -21.78650 -21.25274 -20.60235 -19.21646 -18.54747 -17.70368 -16.07162 -15.96617 -15.15332 -14.72992 -14.29402 -13.96581 -13.76206 -13.61947 -13.49396 -13.18698 -12.99979 -12.77405 -12.45425 -12.29444 -12.12916 -11.67726 -11.43213 -11.41928 -11.35957 -11.07832 -10.96046 -10.76914 -10.69074 -10.56140 -10.52277 -10.49378 -10.31101 -10.20905 -9.64646 -9.13268 -8.91631 -8.79525 -8.25137 -8.13191 -7.54542 -5.95679 -4.15290 3.21245 3.30756 3.31468 3.41195 4.19978 4.30921 4.74213 4.90827 5.15996 5.21694 5.24037 5.26523 5.42641 5.51775 5.57145 5.62282 5.65712 5.72520 5.87370 6.01324 6.04154 6.07055 6.13151 6.17346 6.18957 6.22876 6.28016 6.35743 6.44228 6.52496 6.58541 6.64380 6.65228 6.78735 6.80260 6.93611 7.06798 7.24571 7.29979 7.61756 7.77968 7.90027 8.05995 8.36075 8.81461 9.07134 9.47549 9.64572 10.93430 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.007048 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.215651 B = 3971.926827 C = 4897.095916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.158 3.842 4 C -0.132 4.132 5 C -0.151 4.151 6 N -0.626 5.626 7 C 0.113 3.887 8 C -0.185 4.185 9 C 0.708 3.292 10 O -0.608 6.608 11 N -0.701 5.701 12 C 0.183 3.817 13 C 0.038 3.962 14 C -0.495 4.495 15 H 0.059 0.941 16 C 0.079 3.921 17 N -0.860 5.860 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.198 4.198 23 C -0.213 4.213 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.393 0.607 41 H 0.012 0.988 42 H 0.112 0.888 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -11.681 1.888 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.053 3.947 4 C -0.170 4.170 5 C -0.208 4.208 6 N -0.364 5.364 7 C -0.011 4.011 8 C -0.243 4.243 9 C 0.409 3.591 10 O -0.488 6.488 11 N -0.352 5.352 12 C 0.059 3.941 13 C 0.037 3.963 14 C -0.533 4.533 15 H 0.077 0.923 16 C -0.126 4.126 17 N -0.496 5.496 18 Si 0.712 3.288 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.237 4.237 23 C -0.251 4.251 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.227 0.773 41 H 0.030 0.970 42 H 0.130 0.870 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.992 -11.353 2.831 11.869 hybrid contribution 1.082 0.177 -1.061 1.526 sum 3.074 -11.176 1.770 11.725 Atomic orbital electron populations 1.21660 0.95475 1.00467 1.02588 1.21906 0.96675 0.96818 1.01669 1.20899 0.93592 0.92301 0.87886 1.21939 0.95753 0.97883 1.01435 1.21760 0.99482 0.96401 1.03170 1.47052 1.53863 1.29789 1.05743 1.21285 0.96538 0.97688 0.85556 1.22470 0.98229 1.02953 1.00670 1.15840 0.79052 0.79461 0.84739 1.90799 1.58106 1.69636 1.30292 1.44911 1.58483 1.25118 1.06728 1.20900 0.91110 0.84453 0.97604 1.19259 0.88881 0.96093 0.92074 1.20457 0.91349 1.47896 0.93565 0.92330 1.24937 0.98312 0.94755 0.94586 1.69889 1.31301 1.43637 1.04780 0.86710 0.83801 0.78806 0.79452 1.20685 1.21136 1.19839 1.22925 1.05817 0.92288 1.02678 1.22948 1.04706 0.98495 0.98923 0.93525 0.92681 0.92577 0.92050 0.91536 0.88277 0.91802 0.91875 0.91400 0.92871 0.93675 0.90983 0.91414 0.92449 0.90560 0.92128 0.77272 0.96955 0.86994 0.92837 0.91518 0.90301 0.90757 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.80 37.16 0.36 -1.50 16 2 C -0.13 -1.57 5.36 -26.73 -0.14 -1.71 16 3 C 0.16 2.32 2.02 -67.93 -0.14 2.18 16 4 C -0.13 -1.70 4.91 -26.73 -0.13 -1.84 16 5 C -0.15 -2.31 9.20 37.16 0.34 -1.97 16 6 N -0.63 -10.43 1.29 -171.80 -0.22 -10.66 16 7 C 0.11 1.60 4.94 -4.04 -0.02 1.58 16 8 C -0.18 -2.77 9.15 37.16 0.34 -2.43 16 9 C 0.71 15.08 8.21 -86.92 -0.71 14.36 16 10 O -0.61 -15.12 15.69 5.29 0.08 -15.03 16 11 N -0.70 -15.24 4.77 -65.23 -0.31 -15.55 16 12 C 0.18 4.40 4.61 -4.04 -0.02 4.38 16 13 C 0.04 0.89 2.02 -155.66 -0.31 0.57 16 14 C -0.50 -12.44 8.43 -34.44 -0.29 -12.73 16 15 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 16 C 0.08 1.99 5.30 -17.82 -0.09 1.89 16 17 N -0.86 -22.64 10.23 55.43 0.57 -22.07 16 18 Si 0.88 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 23 C -0.21 -4.47 9.92 -26.69 -0.26 -4.73 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 27 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.73 6.91 -51.93 -0.36 1.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.76 6.23 -51.93 -0.32 0.44 16 32 H 0.07 1.25 6.37 -51.93 -0.33 0.92 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 36 H 0.07 0.96 6.88 -51.93 -0.36 0.61 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.44 7.44 -51.93 -0.39 1.06 16 39 H 0.06 0.88 4.96 -51.93 -0.26 0.62 16 40 H 0.39 8.15 5.48 -40.82 -0.22 7.92 16 41 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 42 H 0.11 3.08 5.93 -51.92 -0.31 2.77 16 43 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -27.71 361.27 -9.04 -36.75 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -8.23 Total: 12.78 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.35 Total: -6.58 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.03 Total: -48.27 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.71 -9.04 -36.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359088034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.695 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds