Wall clock time and date at job start Tue Mar 31 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.52997 * 109.47102 * 175.00036 * 3 2 1 5 5 C 1.53003 * 109.46797 * 184.99964 * 4 3 2 6 6 N 1.46498 * 109.47251 * 295.00186 * 3 2 1 7 7 C 1.46505 * 119.99877 * 299.99976 * 6 3 2 8 8 C 1.52997 * 109.46850 * 263.40445 * 7 6 3 9 9 C 1.34775 * 120.00235 * 119.99789 * 6 3 2 10 10 O 1.21588 * 119.99730 * 355.17316 * 9 6 3 11 11 N 1.34774 * 120.00112 * 174.90149 * 9 6 3 12 12 C 1.46498 * 120.00220 * 184.77695 * 11 9 6 13 13 C 1.52996 * 109.47342 * 175.00782 * 12 11 9 14 14 C 1.50700 * 115.55241 * 305.85933 * 13 12 11 15 15 H 1.08007 * 119.99720 * 144.21616 * 14 13 12 16 16 C 1.37868 * 120.00106 * 324.22493 * 14 13 12 17 17 N 1.31520 * 120.00071 * 2.33759 * 16 14 13 18 18 Si 1.86804 * 120.00289 * 182.33969 * 16 14 13 19 19 H 1.48498 * 109.47216 * 89.99756 * 18 16 14 20 20 H 1.48496 * 109.47394 * 210.00211 * 18 16 14 21 21 H 1.48503 * 109.46857 * 330.00013 * 18 16 14 22 22 C 1.53003 * 117.50038 * 160.18660 * 13 12 11 23 23 C 1.53007 * 117.49590 * 91.52938 * 13 12 11 24 24 H 1.08998 * 109.46693 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46773 * 299.99659 * 1 2 3 26 26 H 1.08998 * 109.46758 * 59.99862 * 1 2 3 27 27 H 1.09002 * 109.47110 * 240.00052 * 2 1 3 28 28 H 1.08998 * 109.46758 * 120.00138 * 2 1 3 29 29 H 1.09001 * 109.46752 * 54.99908 * 3 2 1 30 30 H 1.09000 * 109.47149 * 305.00059 * 4 3 2 31 31 H 1.08991 * 109.47030 * 64.99993 * 4 3 2 32 32 H 1.08993 * 109.47626 * 300.00180 * 5 4 3 33 33 H 1.08999 * 109.46772 * 60.00462 * 5 4 3 34 34 H 1.09002 * 109.46973 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46779 * 23.40406 * 7 6 3 36 36 H 1.09003 * 109.47002 * 143.40533 * 7 6 3 37 37 H 1.09004 * 109.47151 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47062 * 299.99535 * 8 7 6 39 39 H 1.08997 * 109.47168 * 59.99810 * 8 7 6 40 40 H 0.96997 * 120.00069 * 4.78590 * 11 9 6 41 41 H 1.09001 * 109.47551 * 295.01513 * 12 11 9 42 42 H 1.09010 * 109.46529 * 55.01302 * 12 11 9 43 43 H 0.96998 * 120.00239 * 185.00849 * 17 16 14 44 44 H 1.09000 * 117.50082 * 0.02562 * 22 13 12 45 45 H 1.08997 * 117.49820 * 145.02155 * 22 13 12 46 46 H 1.08999 * 117.49705 * 214.97679 * 23 13 12 47 47 H 1.08993 * 117.49580 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6525 2.0975 -1.2518 7 6 2.1140 1.5590 -2.5337 8 6 3.3609 2.3205 -2.9876 9 6 0.8715 3.1955 -1.2241 10 8 0.4164 3.5914 -0.1683 11 7 0.5993 3.8578 -2.3659 12 6 -0.1619 5.1089 -2.3234 13 6 -0.2240 5.7160 -3.7264 14 6 1.1058 5.9225 -4.4047 15 1 1.1959 5.7789 -5.4714 16 6 2.2073 6.2945 -3.6637 17 7 2.1086 6.4244 -2.3587 18 14 3.8400 6.6141 -4.5133 19 1 3.9256 8.0456 -4.8987 20 1 4.9529 6.2833 -3.5874 21 1 3.9394 5.7673 -5.7291 22 6 -1.3256 6.7406 -4.0046 23 6 -1.4156 5.3367 -4.6081 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6054 1.9815 0.8418 30 1 3.8571 0.8800 1.0113 31 1 4.0029 0.9836 -0.7596 32 1 3.7723 3.4493 -0.6344 33 1 3.6264 3.3456 1.1365 34 1 5.1508 2.8863 0.3411 35 1 2.3555 0.5024 -2.4181 36 1 1.3273 1.6724 -3.2797 37 1 3.7040 1.9202 -3.9416 38 1 3.1193 3.3772 -3.1032 39 1 4.1475 2.2072 -2.2416 40 1 0.9072 3.5062 -3.2158 41 1 -1.1730 4.9073 -1.9696 42 1 0.3273 5.8089 -1.6459 43 1 2.8622 6.7559 -1.8459 44 1 -2.0059 6.9825 -3.1881 45 1 -1.0887 7.5638 -4.6786 46 1 -1.2377 5.2370 -5.6788 47 1 -2.1548 4.6544 -4.1887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359088034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:49 Heat of formation + Delta-G solvation = -29.389856 kcal Electronic energy + Delta-G solvation = -24709.258460 eV Core-core repulsion = 21506.149906 eV Total energy + Delta-G solvation = -3203.108555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26773 -38.83653 -37.75572 -35.35200 -34.17471 -33.63725 -33.02749 -31.00280 -28.03743 -27.44232 -26.45838 -24.27554 -22.97982 -22.84864 -21.99366 -21.08291 -19.96787 -19.26006 -17.89197 -17.37640 -16.78365 -16.40470 -15.90169 -15.39531 -15.16829 -15.02878 -14.94554 -14.62788 -14.38983 -14.08966 -13.89062 -13.63575 -13.47427 -13.32990 -13.20761 -12.95246 -12.63847 -12.52970 -12.50136 -12.30461 -12.07825 -12.02262 -11.95594 -11.69902 -11.62321 -11.50613 -11.40702 -10.93735 -10.77397 -10.63760 -10.12069 -9.74647 -9.14416 -7.89908 -6.15038 1.39828 1.44615 1.51347 1.97075 2.42205 2.56022 3.04562 3.40208 3.68298 3.80656 4.10419 4.14092 4.17984 4.30174 4.36130 4.45865 4.49739 4.56222 4.57004 4.61841 4.75250 4.79517 4.83018 4.84934 4.95258 4.96969 5.02887 5.04069 5.11620 5.14069 5.14995 5.19621 5.29595 5.31593 5.38471 5.45764 5.54500 5.55992 5.63259 5.90665 6.02185 6.09105 6.30668 6.42083 6.85793 7.41890 7.49801 7.97212 8.96133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.007048 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.215651 B = 3971.926827 C = 4897.095916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.151 3.849 4 C -0.122 4.122 5 C -0.148 4.148 6 N -0.617 5.617 7 C 0.110 3.890 8 C -0.178 4.178 9 C 0.702 3.298 10 O -0.652 6.652 11 N -0.698 5.698 12 C 0.197 3.803 13 C 0.010 3.990 14 C -0.500 4.500 15 H 0.057 0.943 16 C 0.044 3.956 17 N -0.882 5.882 18 Si 0.937 3.063 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.262 1.262 22 C -0.200 4.200 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.004 0.996 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -14.431 0.712 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.047 3.953 4 C -0.160 4.160 5 C -0.205 4.205 6 N -0.353 5.353 7 C -0.012 4.012 8 C -0.237 4.237 9 C 0.404 3.596 10 O -0.536 6.536 11 N -0.350 5.350 12 C 0.072 3.928 13 C 0.009 3.991 14 C -0.538 4.538 15 H 0.075 0.925 16 C -0.158 4.158 17 N -0.519 5.519 18 Si 0.764 3.236 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.186 1.186 22 C -0.238 4.238 23 C -0.224 4.224 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.055 -14.144 1.621 14.561 hybrid contribution 0.735 1.037 -0.672 1.438 sum 3.790 -13.107 0.949 13.677 Atomic orbital electron populations 1.21638 0.96568 1.01378 1.00428 1.21870 0.95567 0.94590 1.04002 1.21109 0.94898 0.93591 0.85688 1.21910 0.93993 0.96395 1.03706 1.21716 1.00666 0.97724 1.00421 1.47083 1.52273 1.28263 1.07718 1.21520 0.96090 0.99522 0.84096 1.22396 0.98702 1.00315 1.02241 1.16065 0.79351 0.80417 0.83790 1.90757 1.59959 1.71203 1.31707 1.44740 1.58528 1.24517 1.07189 1.20514 0.90316 0.84672 0.97270 1.19292 0.89434 0.98089 0.92302 1.20606 0.92149 1.47606 0.93415 0.92510 1.25463 1.00746 0.94710 0.94856 1.70084 1.31389 1.44568 1.05833 0.85877 0.80605 0.78351 0.78757 1.21083 1.21723 1.18634 1.22945 1.05054 0.92831 1.02995 1.22934 1.02777 0.97640 0.99026 0.90972 0.94662 0.94999 0.89786 0.88911 0.91883 0.88838 0.89923 0.95022 0.94878 0.91728 0.86965 0.91511 0.89965 0.94975 0.91639 0.76709 0.97769 0.90825 0.93753 0.90884 0.90367 0.89653 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.80 71.98 0.71 -2.75 16 2 C -0.12 -2.50 5.36 30.60 0.16 -2.33 16 3 C 0.15 4.26 2.02 44.99 0.09 4.35 16 4 C -0.12 -2.85 4.91 30.59 0.15 -2.70 16 5 C -0.15 -4.51 9.20 71.98 0.66 -3.84 16 6 N -0.62 -20.34 1.29 -815.72 -1.05 -21.40 16 7 C 0.11 2.88 4.94 86.38 0.43 3.31 16 8 C -0.18 -5.05 9.15 71.98 0.66 -4.39 16 9 C 0.70 31.01 8.21 179.06 1.47 32.48 16 10 O -0.65 -34.31 15.69 -3.99 -0.06 -34.38 16 11 N -0.70 -31.30 4.77 -478.54 -2.28 -33.58 16 12 C 0.20 9.84 4.61 86.38 0.40 10.24 16 13 C 0.01 0.45 2.02 -52.93 -0.11 0.35 16 14 C -0.50 -25.23 8.43 25.60 0.22 -25.01 16 15 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 16 C 0.04 2.27 5.30 84.65 0.45 2.72 16 17 N -0.88 -48.27 10.23 21.44 0.22 -48.05 16 18 Si 0.94 41.31 29.54 68.60 2.03 43.33 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 22 C -0.20 -8.71 9.96 30.62 0.30 -8.41 16 23 C -0.19 -7.56 9.92 30.62 0.30 -7.26 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.03 0.91 7.75 -2.39 -0.02 0.89 16 27 H 0.08 1.39 6.51 -2.39 -0.02 1.37 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.06 2.27 6.91 -2.39 -0.02 2.25 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.65 6.23 -2.39 -0.01 1.64 16 32 H 0.03 1.18 6.37 -2.39 -0.02 1.16 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 2.08 6.36 -2.39 -0.02 2.06 16 36 H 0.07 1.78 6.88 -2.39 -0.02 1.77 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.03 1.20 7.44 -2.38 -0.02 1.18 16 39 H 0.06 1.76 4.96 -2.39 -0.01 1.75 16 40 H 0.40 16.75 5.48 -92.71 -0.51 16.24 16 41 H 0.00 0.21 8.09 -2.39 -0.02 0.19 16 42 H 0.07 4.29 5.93 -2.38 -0.01 4.27 16 43 H 0.25 13.79 8.32 -92.71 -0.77 13.02 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 47 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -63.60 361.27 5.17 -58.43 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.43 Total: 38.89 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.89 Total: -3.25 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.12 Total: -103.03 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.06 Total: -34.38 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -63.60 5.17 -58.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359088034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.039 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds