Wall clock time and date at job start Tue Mar 31 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00292 * 2 1 4 4 C 1.50698 * 109.47402 * 71.64084 * 3 2 1 5 5 H 1.08000 * 120.00088 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00278 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99597 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00376 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47259 * 89.99536 * 8 6 4 10 10 H 1.48496 * 109.47187 * 210.00251 * 8 6 4 11 11 H 1.48505 * 109.46682 * 329.99878 * 8 6 4 12 12 C 1.46891 * 110.99969 * 236.04098 * 2 1 3 13 13 H 1.08998 * 109.33584 * 178.52640 * 12 2 1 14 14 C 1.53070 * 109.40063 * 58.73936 * 12 2 1 15 15 C 1.53350 * 108.42317 * 190.97053 * 14 12 2 16 16 C 1.52915 * 108.67505 * 67.53291 * 15 14 12 17 17 N 1.45754 * 110.49048 * 309.24377 * 16 15 14 18 18 C 1.46498 * 117.95227 * 199.07954 * 17 16 15 19 19 C 1.52994 * 109.47328 * 89.99615 * 18 17 16 20 20 C 1.52998 * 109.47250 * 60.00211 * 19 18 17 21 21 C 1.53003 * 109.47307 * 300.00422 * 19 18 17 22 22 C 1.52997 * 109.47320 * 180.02562 * 19 18 17 23 23 C 1.33362 * 124.10262 * 19.35168 * 17 16 15 24 24 O 1.21282 * 118.24525 * 177.49680 * 23 17 16 25 25 H 1.08990 * 109.47104 * 183.95758 * 1 2 3 26 26 H 1.09003 * 109.46857 * 303.95973 * 1 2 3 27 27 H 1.08997 * 109.46888 * 63.95672 * 1 2 3 28 28 H 1.08999 * 109.47170 * 191.64503 * 3 2 1 29 29 H 1.09001 * 109.47011 * 311.64254 * 3 2 1 30 30 H 0.96996 * 120.00108 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.67431 * 71.23817 * 14 12 2 32 32 H 1.08999 * 109.70011 * 310.71784 * 14 12 2 33 33 H 1.09001 * 109.60726 * 307.77146 * 15 14 12 34 34 H 1.09006 * 109.59981 * 187.28536 * 15 14 12 35 35 H 1.09001 * 109.30133 * 188.93235 * 16 15 14 36 36 H 1.09004 * 109.30487 * 69.55558 * 16 15 14 37 37 H 1.09002 * 109.46487 * 329.99996 * 18 17 16 38 38 H 1.09005 * 109.46995 * 210.00039 * 18 17 16 39 39 H 1.09000 * 109.47442 * 299.99889 * 20 19 18 40 40 H 1.08997 * 109.47664 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47301 * 59.99939 * 20 19 18 42 42 H 1.09001 * 109.47138 * 180.02562 * 21 19 18 43 43 H 1.09009 * 109.46696 * 299.99922 * 21 19 18 44 44 H 1.08999 * 109.47293 * 59.99499 * 21 19 18 45 45 H 1.09008 * 109.47316 * 300.00263 * 22 19 18 46 46 H 1.09001 * 109.47255 * 59.99547 * 22 19 18 47 47 H 1.09001 * 109.47763 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7579 2.0008 1.3485 5 1 1.2653 1.4382 2.1277 6 6 2.1692 3.2949 1.5874 7 7 2.7685 3.9802 0.6383 8 14 1.8752 4.0749 3.2591 9 1 3.0382 3.8058 4.1423 10 1 1.7046 5.5412 3.0981 11 1 0.6488 3.4975 3.8658 12 6 1.9955 -0.7660 -1.1374 13 1 3.0847 -0.7265 -1.1261 14 6 1.4782 -0.1575 -2.4433 15 6 1.8061 -1.1211 -3.5903 16 6 0.9715 -2.3906 -3.4170 17 7 1.1113 -2.9123 -2.0632 18 6 0.7507 -4.3123 -1.8262 19 6 1.9799 -5.1984 -2.0373 20 6 3.0818 -4.7832 -1.0604 21 6 2.4840 -5.0376 -3.4729 22 6 1.6031 -6.6605 -1.7903 23 6 1.5421 -2.1936 -1.0257 24 8 1.5738 -2.7225 0.0652 25 1 -0.3633 -1.0251 0.0709 26 1 -0.3633 0.5741 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0654 1.3498 -0.2074 29 1 1.4883 1.9553 -0.7680 30 1 3.0582 4.8905 0.8064 31 1 1.9650 0.8017 -2.6193 32 1 0.3993 -0.0155 -2.3804 33 1 2.8661 -1.3738 -3.5640 34 1 1.5633 -0.6511 -4.5434 35 1 1.3085 -3.1433 -4.1297 36 1 -0.0769 -2.1615 -3.6083 37 1 -0.0343 -4.6080 -2.5222 38 1 0.3915 -4.4267 -0.8034 39 1 3.3502 -3.7416 -1.2367 40 1 3.9574 -5.4148 -1.2104 41 1 2.7227 -4.8977 -0.0376 42 1 3.3595 -5.6693 -3.6234 43 1 1.6990 -5.3335 -4.1689 44 1 2.7524 -3.9960 -3.6493 45 1 1.2437 -6.7754 -0.7677 46 1 0.8182 -6.9561 -2.4865 47 1 2.4787 -7.2919 -1.9412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359609200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:32 Heat of formation + Delta-G solvation = -33.910714 kcal Electronic energy + Delta-G solvation = -24219.196813 eV Core-core repulsion = 21015.892219 eV Total energy + Delta-G solvation = -3203.304594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76793 -37.71493 -36.43372 -35.42442 -32.75921 -31.77531 -28.84608 -27.48798 -27.27638 -27.04476 -26.51612 -25.14967 -23.25266 -22.13563 -20.44475 -19.02909 -18.18779 -16.64911 -16.30266 -16.16334 -15.72815 -15.00370 -14.42492 -14.30566 -14.23523 -14.18343 -13.55029 -13.48956 -13.19796 -13.02006 -12.85440 -12.29382 -12.21585 -12.02921 -11.78515 -11.65705 -11.60995 -11.20568 -11.09890 -11.01902 -10.99186 -10.92460 -10.74035 -10.68808 -10.60724 -10.57183 -10.41980 -9.90082 -9.29714 -9.00395 -8.44238 -8.39883 -7.18167 -6.00405 -4.00817 3.07121 3.16963 3.35595 3.41101 3.45978 4.45247 4.65683 4.69779 4.76650 4.84137 4.86978 4.90467 5.00588 5.25232 5.34154 5.35643 5.42369 5.45227 5.47238 5.57993 5.61596 5.66814 5.70397 5.84522 5.88959 5.89627 5.95599 5.98605 5.99380 6.13347 6.14858 6.17724 6.26091 6.29911 6.49589 6.53366 6.67417 6.76337 7.21745 7.30165 7.68034 7.84934 8.07851 8.17777 8.53450 8.64798 9.07306 9.63185 11.10340 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.004181 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.652622 B = 6695.089037 C = 7116.504628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.514 5.514 3 C 0.195 3.805 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.077 3.923 13 H 0.103 0.897 14 C -0.162 4.162 15 C -0.131 4.131 16 C 0.109 3.891 17 N -0.608 5.608 18 C 0.119 3.881 19 C -0.084 4.084 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.138 4.138 23 C 0.524 3.476 24 O -0.523 6.523 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.029 0.971 29 H -0.004 1.004 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -16.786 -12.429 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.238 5.238 3 C 0.071 3.929 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.035 4.035 13 H 0.120 0.880 14 C -0.201 4.201 15 C -0.169 4.169 16 C -0.014 4.014 17 N -0.342 5.342 18 C -0.005 4.005 19 C -0.085 4.085 20 C -0.189 4.189 21 C -0.201 4.201 22 C -0.196 4.196 23 C 0.312 3.688 24 O -0.397 6.397 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.847 -17.068 -11.405 20.724 hybrid contribution -0.328 1.005 -0.085 1.060 sum -3.175 -16.063 -11.490 20.003 Atomic orbital electron populations 1.22285 0.88861 0.99809 1.00464 1.62157 1.06971 1.17682 1.36944 1.19760 0.95100 0.80929 0.97138 1.21170 1.37833 0.97342 0.97884 0.91772 1.24968 0.95368 0.97125 0.97130 1.69952 1.40584 1.10866 1.32682 0.86485 0.78721 0.78062 0.84085 1.20614 1.21382 1.19836 1.21644 1.01070 0.90190 0.90641 0.87957 1.22444 1.02745 0.99945 0.94967 1.21824 1.00368 0.95089 0.99629 1.21536 0.99921 0.96384 0.83551 1.47368 1.66726 1.11333 1.08808 1.21510 0.95579 0.80433 1.02932 1.20938 0.96427 0.95197 0.95947 1.21831 0.96830 1.00906 0.99358 1.22027 1.00636 1.02062 0.95422 1.21799 1.01165 0.94889 1.01702 1.20187 0.76615 0.88448 0.83530 1.90670 1.52617 1.70608 1.25847 0.93671 0.90575 0.96639 0.95328 0.98596 0.92983 0.90166 0.90843 0.91155 0.90223 0.90418 0.92397 0.91244 0.89532 0.92828 0.93718 0.91756 0.92923 0.92971 0.91949 0.92418 0.92859 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 8.75 60.07 0.53 1.23 16 2 N -0.51 -11.60 4.44 -237.99 -1.06 -12.66 16 3 C 0.20 5.08 4.06 -4.98 -0.02 5.06 16 4 C -0.50 -14.43 8.53 -34.44 -0.29 -14.72 16 5 H 0.06 1.86 7.50 -52.49 -0.39 1.47 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.42 2.43 -69.08 -0.17 1.25 16 13 H 0.10 1.95 7.97 -51.93 -0.41 1.53 16 14 C -0.16 -2.46 4.63 -26.51 -0.12 -2.58 16 15 C -0.13 -1.44 6.02 -26.59 -0.16 -1.60 16 16 C 0.11 1.12 5.52 -4.49 -0.02 1.09 16 17 N -0.61 -7.97 2.38 -174.95 -0.42 -8.39 16 18 C 0.12 1.38 4.52 -4.05 -0.02 1.36 16 19 C -0.08 -0.88 0.84 -154.51 -0.13 -1.01 16 20 C -0.13 -1.71 7.12 37.16 0.26 -1.45 16 21 C -0.14 -1.28 7.16 37.16 0.27 -1.02 16 22 C -0.14 -1.21 8.47 37.16 0.31 -0.89 16 23 C 0.52 9.03 4.13 -11.86 -0.05 8.98 16 24 O -0.52 -10.77 13.77 5.56 0.08 -10.69 16 25 H 0.04 0.89 6.96 -51.93 -0.36 0.53 16 26 H 0.08 1.68 7.17 -51.93 -0.37 1.31 16 27 H 0.02 0.30 6.05 -51.93 -0.31 -0.02 16 28 H 0.03 0.79 7.88 -51.93 -0.41 0.38 16 29 H 0.00 -0.10 7.46 -51.93 -0.39 -0.49 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 1.33 7.50 -51.93 -0.39 0.94 16 32 H 0.07 1.15 5.85 -51.93 -0.30 0.84 16 33 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.64 5.41 -51.93 -0.28 0.36 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 39 H 0.05 0.80 6.19 -51.93 -0.32 0.48 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.95 7.60 -51.93 -0.39 0.56 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.39 8.07 -51.92 -0.42 -0.03 16 44 H 0.06 0.59 5.81 -51.93 -0.30 0.29 16 45 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -31.73 348.37 -8.51 -40.24 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.37 Total: -1.97 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.29 Total: -2.81 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.74 Total: -47.03 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.73 -8.51 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359609200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.330 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds