Wall clock time and date at job start Tue Mar 31 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00297 * 2 1 4 4 C 1.50701 * 109.47006 * 288.19777 * 3 2 1 5 5 H 1.07994 * 120.00004 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99776 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99972 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99722 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46889 * 119.99891 * 8 6 4 11 11 H 1.48498 * 109.47020 * 239.99821 * 8 6 4 12 12 C 1.46903 * 111.00072 * 123.95759 * 2 1 3 13 13 H 1.09001 * 109.40098 * 184.06062 * 12 2 1 14 14 C 1.53070 * 109.39910 * 303.88853 * 12 2 1 15 15 C 1.53176 * 108.51503 * 169.01906 * 14 12 2 16 16 C 1.52922 * 108.62638 * 292.41306 * 15 14 12 17 17 N 1.45752 * 110.48631 * 50.74672 * 16 15 14 18 18 C 1.46508 * 117.94336 * 160.92395 * 17 16 15 19 19 C 1.53000 * 109.46980 * 270.02328 * 18 17 16 20 20 C 1.52999 * 109.47365 * 60.00119 * 19 18 17 21 21 C 1.52996 * 109.46671 * 180.02562 * 19 18 17 22 22 C 1.52995 * 109.47154 * 300.00057 * 19 18 17 23 23 C 1.33345 * 124.11025 * 340.94733 * 17 16 15 24 24 O 1.21282 * 118.24906 * 182.19612 * 23 17 16 25 25 H 1.09004 * 109.46469 * 303.13672 * 1 2 3 26 26 H 1.08996 * 109.47215 * 63.13337 * 1 2 3 27 27 H 1.08998 * 109.46967 * 183.14113 * 1 2 3 28 28 H 1.08995 * 109.47074 * 48.19661 * 3 2 1 29 29 H 1.09003 * 109.47328 * 168.19717 * 3 2 1 30 30 H 0.97007 * 119.99728 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.67037 * 288.67691 * 14 12 2 32 32 H 1.08998 * 109.67781 * 49.20503 * 14 12 2 33 33 H 1.09004 * 109.62588 * 172.67104 * 15 14 12 34 34 H 1.09000 * 109.75519 * 52.23548 * 15 14 12 35 35 H 1.09000 * 109.30024 * 290.43522 * 16 15 14 36 36 H 1.08997 * 109.13240 * 170.95920 * 16 15 14 37 37 H 1.09000 * 109.46736 * 30.02224 * 18 17 16 38 38 H 1.08995 * 109.46840 * 150.01998 * 18 17 16 39 39 H 1.09006 * 109.46993 * 59.99308 * 20 19 18 40 40 H 1.08993 * 109.47332 * 180.02562 * 20 19 18 41 41 H 1.08997 * 109.46851 * 300.00149 * 20 19 18 42 42 H 1.09000 * 109.47508 * 59.99926 * 21 19 18 43 43 H 1.09001 * 109.47215 * 180.02562 * 21 19 18 44 44 H 1.08999 * 109.47303 * 299.99720 * 21 19 18 45 45 H 1.09000 * 109.47355 * 60.00282 * 22 19 18 46 46 H 1.08998 * 109.47152 * 180.02562 * 22 19 18 47 47 H 1.09007 * 109.47213 * 300.00223 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7613 1.9994 -1.3498 5 1 1.2708 1.4359 -2.1297 6 6 2.1742 3.2929 -1.5893 7 7 2.7719 3.9788 -0.6396 8 14 1.8845 4.0710 -3.2626 9 1 1.1978 3.0975 -4.1490 10 1 1.0371 5.2805 -3.1060 11 1 3.1878 4.4540 -3.8627 12 6 1.9955 -0.7661 1.1375 13 1 3.0827 -0.6892 1.1537 14 6 1.4261 -0.1982 2.4400 15 6 1.7593 -1.1663 3.5794 16 6 0.9730 -2.4604 3.3664 17 7 1.1631 -2.9553 2.0087 18 6 0.8562 -4.3628 1.7417 19 6 2.1094 -5.2102 1.9702 20 6 2.5725 -5.0554 3.4202 21 6 1.7890 -6.6799 1.6907 22 6 3.2200 -4.7427 1.0275 23 6 1.5993 -2.2075 0.9945 24 8 1.6802 -2.7188 -0.1024 25 1 -0.3632 0.5618 0.8606 26 1 -0.3633 0.4644 -0.9167 27 1 -0.3633 -1.0261 0.0563 28 1 1.4863 1.9561 0.7660 29 1 3.0649 1.3501 0.2102 30 1 3.0621 4.8890 -0.8080 31 1 1.8753 0.7739 2.6438 32 1 0.3449 -0.0922 2.3525 33 1 1.4777 -0.7200 4.5332 34 1 2.8276 -1.3830 3.5782 35 1 -0.0869 -2.2699 3.5353 36 1 1.3215 -3.2111 4.0757 37 1 0.0650 -4.6958 2.4134 38 1 0.5263 -4.4730 0.7088 39 1 1.7812 -5.3884 4.0918 40 1 3.4656 -5.6587 3.5828 41 1 2.8008 -4.0083 3.6188 42 1 1.4594 -6.7899 0.6576 43 1 2.6817 -7.2838 1.8539 44 1 0.9977 -7.0133 2.3621 45 1 3.4484 -3.6956 1.2261 46 1 4.1127 -5.3467 1.1899 47 1 2.8901 -4.8530 -0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359609202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:36 Heat of formation + Delta-G solvation = -34.271330 kcal Electronic energy + Delta-G solvation = -24213.735116 eV Core-core repulsion = 21010.414885 eV Total energy + Delta-G solvation = -3203.320231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76669 -37.70985 -36.43690 -35.42579 -32.76182 -31.78416 -28.84670 -27.48691 -27.27156 -27.04766 -26.52001 -25.16285 -23.23955 -22.13203 -20.46004 -19.02991 -18.18155 -16.65618 -16.29904 -16.17027 -15.72181 -15.01230 -14.42519 -14.29640 -14.24484 -14.17352 -13.52775 -13.48563 -13.19569 -13.03461 -12.86043 -12.29914 -12.21503 -12.02733 -11.78243 -11.65371 -11.60236 -11.21701 -11.09923 -11.03628 -10.99178 -10.93370 -10.73757 -10.68876 -10.61721 -10.56602 -10.42523 -9.89561 -9.29483 -8.99570 -8.43968 -8.40334 -7.18742 -6.00401 -4.00709 3.07485 3.17325 3.33991 3.41338 3.48078 4.45419 4.65787 4.70020 4.76494 4.83974 4.86908 4.90175 5.00961 5.24891 5.34271 5.35733 5.42292 5.45339 5.47275 5.58131 5.61709 5.66930 5.70687 5.84544 5.89077 5.89783 5.95680 5.98288 5.99416 6.09413 6.14420 6.20456 6.25367 6.30083 6.48929 6.51637 6.67684 6.74311 7.21530 7.29510 7.68452 7.85262 8.07691 8.17492 8.53411 8.65358 9.07748 9.63389 11.10372 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.004188 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.298644 B = 6683.713470 C = 7103.887920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.514 5.514 3 C 0.195 3.805 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.077 3.923 13 H 0.102 0.898 14 C -0.161 4.161 15 C -0.131 4.131 16 C 0.109 3.891 17 N -0.608 5.608 18 C 0.119 3.881 19 C -0.084 4.084 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.132 4.132 23 C 0.524 3.476 24 O -0.523 6.523 25 H 0.017 0.983 26 H 0.073 0.927 27 H 0.042 0.958 28 H -0.004 1.004 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -16.950 12.315 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.238 5.238 3 C 0.071 3.929 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.036 4.036 13 H 0.120 0.880 14 C -0.200 4.200 15 C -0.169 4.169 16 C -0.014 4.014 17 N -0.343 5.343 18 C -0.004 4.004 19 C -0.085 4.085 20 C -0.201 4.201 21 C -0.196 4.196 22 C -0.189 4.189 23 C 0.312 3.688 24 O -0.397 6.397 25 H 0.035 0.965 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.014 0.986 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.805 -17.227 11.284 20.784 hybrid contribution -0.329 1.017 0.098 1.073 sum -3.134 -16.210 11.382 20.053 Atomic orbital electron populations 1.22237 0.88837 0.98956 1.00998 1.62134 1.06934 1.17711 1.36989 1.19777 0.95106 0.80870 0.97178 1.21208 1.37755 0.97365 0.97785 0.91717 1.24970 0.95363 0.97147 0.97147 1.69965 1.40685 1.10785 1.32657 0.86438 0.77867 0.79030 0.84100 1.19599 1.21173 1.21019 1.21638 1.01164 0.90162 0.90596 0.87981 1.22417 1.02548 0.99999 0.95065 1.21799 1.00664 0.94894 0.99580 1.21540 0.99881 0.96546 0.83436 1.47370 1.67065 1.10386 1.09439 1.21510 0.95729 0.80381 1.02820 1.20940 0.96433 0.95239 0.95908 1.22024 1.00721 1.02060 0.95339 1.21798 1.01274 0.94811 1.01672 1.21836 0.96675 1.00788 0.99625 1.20187 0.76424 0.88552 0.83664 1.90670 1.51886 1.72199 1.24914 0.96480 0.90792 0.93934 0.98596 0.95315 0.93044 0.90248 0.90858 0.90237 0.91158 0.92354 0.90432 0.91237 0.89542 0.92964 0.92922 0.91961 0.92412 0.92596 0.92864 0.92833 0.93732 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 8.53 60.07 0.51 1.30 16 2 N -0.51 -11.59 4.43 -237.99 -1.05 -12.65 16 3 C 0.20 5.09 4.14 -4.98 -0.02 5.06 16 4 C -0.50 -14.41 8.64 -34.44 -0.30 -14.71 16 5 H 0.06 1.88 7.49 -52.49 -0.39 1.49 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.08 1.42 2.41 -69.08 -0.17 1.25 16 13 H 0.10 1.95 7.91 -51.93 -0.41 1.54 16 14 C -0.16 -2.43 4.64 -26.60 -0.12 -2.56 16 15 C -0.13 -1.43 6.02 -26.68 -0.16 -1.59 16 16 C 0.11 1.11 5.52 -4.49 -0.02 1.09 16 17 N -0.61 -7.97 2.39 -174.96 -0.42 -8.39 16 18 C 0.12 1.38 4.52 -4.04 -0.02 1.36 16 19 C -0.08 -0.88 0.84 -154.51 -0.13 -1.01 16 20 C -0.14 -1.29 7.17 37.16 0.27 -1.02 16 21 C -0.14 -1.21 8.47 37.16 0.31 -0.89 16 22 C -0.13 -1.72 7.11 37.15 0.26 -1.46 16 23 C 0.52 9.03 4.09 -11.87 -0.05 8.99 16 24 O -0.52 -10.80 13.96 5.56 0.08 -10.72 16 25 H 0.02 0.33 6.34 -51.93 -0.33 0.00 16 26 H 0.07 1.62 7.35 -51.93 -0.38 1.23 16 27 H 0.04 0.82 6.99 -51.93 -0.36 0.45 16 28 H 0.00 -0.10 7.45 -51.93 -0.39 -0.49 16 29 H 0.03 0.80 7.84 -51.93 -0.41 0.39 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.08 1.30 7.56 -51.92 -0.39 0.91 16 32 H 0.07 1.13 5.93 -51.93 -0.31 0.82 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.63 5.40 -51.93 -0.28 0.35 16 37 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.09 1.20 7.13 -51.93 -0.37 0.82 16 39 H 0.05 0.39 8.07 -51.93 -0.42 -0.03 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.59 5.81 -51.93 -0.30 0.29 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.80 6.17 -51.93 -0.32 0.48 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.96 7.59 -51.92 -0.39 0.57 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -31.84 348.93 -8.54 -40.38 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.39 Total: -2.17 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.27 Total: -2.72 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.74 Total: -47.05 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.84 -8.54 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359609202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.113 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds