Wall clock time and date at job start Tue Mar 31 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00297 * 2 1 4 4 C 1.50701 * 109.47006 * 288.19777 * 3 2 1 5 5 H 1.07994 * 120.00004 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99776 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99972 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99722 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46889 * 119.99891 * 8 6 4 11 11 H 1.48498 * 109.47020 * 239.99821 * 8 6 4 12 12 C 1.46903 * 111.00072 * 123.95759 * 2 1 3 13 13 H 1.09001 * 109.40098 * 184.06062 * 12 2 1 14 14 C 1.53070 * 109.39910 * 303.88853 * 12 2 1 15 15 C 1.53176 * 108.51503 * 169.01906 * 14 12 2 16 16 C 1.52922 * 108.62638 * 292.41306 * 15 14 12 17 17 N 1.45752 * 110.48631 * 50.74672 * 16 15 14 18 18 C 1.46508 * 117.94336 * 160.92395 * 17 16 15 19 19 C 1.53000 * 109.46980 * 270.02328 * 18 17 16 20 20 C 1.52999 * 109.47365 * 60.00119 * 19 18 17 21 21 C 1.52996 * 109.46671 * 180.02562 * 19 18 17 22 22 C 1.52995 * 109.47154 * 300.00057 * 19 18 17 23 23 C 1.33345 * 124.11025 * 340.94733 * 17 16 15 24 24 O 1.21282 * 118.24906 * 182.19612 * 23 17 16 25 25 H 1.09004 * 109.46469 * 303.13672 * 1 2 3 26 26 H 1.08996 * 109.47215 * 63.13337 * 1 2 3 27 27 H 1.08998 * 109.46967 * 183.14113 * 1 2 3 28 28 H 1.08995 * 109.47074 * 48.19661 * 3 2 1 29 29 H 1.09003 * 109.47328 * 168.19717 * 3 2 1 30 30 H 0.97007 * 119.99728 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.67037 * 288.67691 * 14 12 2 32 32 H 1.08998 * 109.67781 * 49.20503 * 14 12 2 33 33 H 1.09004 * 109.62588 * 172.67104 * 15 14 12 34 34 H 1.09000 * 109.75519 * 52.23548 * 15 14 12 35 35 H 1.09000 * 109.30024 * 290.43522 * 16 15 14 36 36 H 1.08997 * 109.13240 * 170.95920 * 16 15 14 37 37 H 1.09000 * 109.46736 * 30.02224 * 18 17 16 38 38 H 1.08995 * 109.46840 * 150.01998 * 18 17 16 39 39 H 1.09006 * 109.46993 * 59.99308 * 20 19 18 40 40 H 1.08993 * 109.47332 * 180.02562 * 20 19 18 41 41 H 1.08997 * 109.46851 * 300.00149 * 20 19 18 42 42 H 1.09000 * 109.47508 * 59.99926 * 21 19 18 43 43 H 1.09001 * 109.47215 * 180.02562 * 21 19 18 44 44 H 1.08999 * 109.47303 * 299.99720 * 21 19 18 45 45 H 1.09000 * 109.47355 * 60.00282 * 22 19 18 46 46 H 1.08998 * 109.47152 * 180.02562 * 22 19 18 47 47 H 1.09007 * 109.47213 * 300.00223 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7613 1.9994 -1.3498 5 1 1.2708 1.4359 -2.1297 6 6 2.1742 3.2929 -1.5893 7 7 2.7719 3.9788 -0.6396 8 14 1.8845 4.0710 -3.2626 9 1 1.1978 3.0975 -4.1490 10 1 1.0371 5.2805 -3.1060 11 1 3.1878 4.4540 -3.8627 12 6 1.9955 -0.7661 1.1375 13 1 3.0827 -0.6892 1.1537 14 6 1.4261 -0.1982 2.4400 15 6 1.7593 -1.1663 3.5794 16 6 0.9730 -2.4604 3.3664 17 7 1.1631 -2.9553 2.0087 18 6 0.8562 -4.3628 1.7417 19 6 2.1094 -5.2102 1.9702 20 6 2.5725 -5.0554 3.4202 21 6 1.7890 -6.6799 1.6907 22 6 3.2200 -4.7427 1.0275 23 6 1.5993 -2.2075 0.9945 24 8 1.6802 -2.7188 -0.1024 25 1 -0.3632 0.5618 0.8606 26 1 -0.3633 0.4644 -0.9167 27 1 -0.3633 -1.0261 0.0563 28 1 1.4863 1.9561 0.7660 29 1 3.0649 1.3501 0.2102 30 1 3.0621 4.8890 -0.8080 31 1 1.8753 0.7739 2.6438 32 1 0.3449 -0.0922 2.3525 33 1 1.4777 -0.7200 4.5332 34 1 2.8276 -1.3830 3.5782 35 1 -0.0869 -2.2699 3.5353 36 1 1.3215 -3.2111 4.0757 37 1 0.0650 -4.6958 2.4134 38 1 0.5263 -4.4730 0.7088 39 1 1.7812 -5.3884 4.0918 40 1 3.4656 -5.6587 3.5828 41 1 2.8008 -4.0083 3.6188 42 1 1.4594 -6.7899 0.6576 43 1 2.6817 -7.2838 1.8539 44 1 0.9977 -7.0133 2.3621 45 1 3.4484 -3.6956 1.2261 46 1 4.1127 -5.3467 1.1899 47 1 2.8901 -4.8530 -0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359609202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:36 Heat of formation + Delta-G solvation = -54.830798 kcal Electronic energy + Delta-G solvation = -24214.626642 eV Core-core repulsion = 21010.414885 eV Total energy + Delta-G solvation = -3204.211757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00250 -38.98961 -37.79603 -36.65098 -34.76578 -33.13146 -30.26873 -29.10873 -28.20930 -28.16777 -27.49488 -26.77534 -24.90153 -23.25194 -22.19649 -19.98339 -19.33581 -18.62440 -17.52102 -17.46058 -17.12613 -16.65997 -16.06857 -15.64648 -15.31691 -15.28034 -14.92122 -14.68407 -14.37836 -14.27222 -14.21957 -13.97269 -13.24108 -13.21755 -13.00312 -12.89437 -12.76202 -12.72799 -12.52023 -12.45197 -12.38100 -12.25690 -12.15830 -12.06658 -11.90651 -11.74594 -11.59149 -11.52399 -11.36047 -10.62163 -10.42860 -9.51908 -8.96473 -8.21556 -6.31186 1.38814 1.40080 1.53847 1.70796 2.04982 2.40354 3.10059 3.26816 3.62416 3.79452 3.81115 3.86935 3.94525 4.04524 4.07753 4.29199 4.39580 4.45432 4.51430 4.58051 4.63550 4.64666 4.76439 4.80347 4.83935 4.92084 4.94072 4.96414 5.00066 5.03197 5.07514 5.10027 5.15162 5.20734 5.23268 5.28322 5.34149 5.46148 5.53765 5.62924 5.67495 6.01501 6.26483 6.43800 6.64075 6.83280 7.33899 7.38317 8.88831 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.004188 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.298644 B = 6683.713470 C = 7103.887920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.537 5.537 3 C 0.217 3.783 4 C -0.526 4.526 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.071 3.929 13 H 0.084 0.916 14 C -0.152 4.152 15 C -0.123 4.123 16 C 0.103 3.897 17 N -0.596 5.596 18 C 0.116 3.884 19 C -0.080 4.080 20 C -0.141 4.141 21 C -0.134 4.134 22 C -0.127 4.127 23 C 0.527 3.473 24 O -0.567 6.567 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.055 0.945 28 H -0.020 1.020 29 H 0.001 0.999 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.055 0.945 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -18.377 14.413 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.261 5.261 3 C 0.091 3.909 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.203 1.203 12 C -0.041 4.041 13 H 0.102 0.898 14 C -0.191 4.191 15 C -0.161 4.161 16 C -0.018 4.018 17 N -0.329 5.329 18 C -0.006 4.006 19 C -0.082 4.082 20 C -0.198 4.198 21 C -0.191 4.191 22 C -0.185 4.185 23 C 0.315 3.685 24 O -0.446 6.446 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.073 0.927 28 H -0.002 1.002 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.969 -18.681 13.440 23.353 hybrid contribution 0.063 1.414 -0.513 1.505 sum -3.905 -17.267 12.927 21.921 Atomic orbital electron populations 1.22108 0.87640 0.99631 1.00520 1.61929 1.08150 1.15821 1.40163 1.19344 0.93245 0.82682 0.95613 1.21473 1.38277 0.98075 0.98632 0.92817 1.25824 0.94761 0.97506 1.01078 1.70065 1.41102 1.11269 1.34644 0.85374 0.78072 0.78182 0.79229 1.19407 1.19870 1.20270 1.21661 1.00263 0.91137 0.91081 0.89823 1.22288 1.01885 1.00100 0.94861 1.21805 1.01034 0.94315 0.98979 1.21867 1.01108 0.96866 0.81969 1.47365 1.64972 1.10763 1.09773 1.21694 0.97332 0.79377 1.02246 1.20925 0.94693 0.96021 0.96516 1.21997 1.01858 1.01913 0.94021 1.21764 1.02351 0.93445 1.01575 1.21780 0.98398 0.99475 0.98846 1.19830 0.76658 0.87954 0.84068 1.90655 1.54184 1.72796 1.26917 0.95230 0.92726 0.92666 1.00204 0.98093 0.92565 0.92169 0.90871 0.87001 0.91113 0.90364 0.87049 0.87597 0.92310 0.90398 0.92397 0.92600 0.93579 0.91881 0.90622 0.95412 0.92572 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.07 8.53 127.69 1.09 3.16 16 2 N -0.54 -25.38 4.43 -906.87 -4.02 -29.40 16 3 C 0.22 11.90 4.14 85.56 0.35 12.26 16 4 C -0.53 -31.30 8.64 25.60 0.22 -31.08 16 5 H 0.05 3.24 7.49 -2.91 -0.02 3.22 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 8 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 C 0.07 2.71 2.41 44.03 0.11 2.81 16 13 H 0.08 3.44 7.91 -2.39 -0.02 3.42 16 14 C -0.15 -4.57 4.64 30.68 0.14 -4.42 16 15 C -0.12 -2.38 6.02 30.63 0.18 -2.19 16 16 C 0.10 1.71 5.52 86.49 0.48 2.19 16 17 N -0.60 -14.64 2.39 -826.64 -1.97 -16.61 16 18 C 0.12 2.45 4.52 86.38 0.39 2.84 16 19 C -0.08 -1.52 0.84 -52.18 -0.04 -1.56 16 20 C -0.14 -1.97 7.17 71.98 0.52 -1.45 16 21 C -0.13 -2.01 8.47 71.98 0.61 -1.40 16 22 C -0.13 -3.37 7.11 71.98 0.51 -2.85 16 23 C 0.53 18.51 4.09 87.71 0.36 18.87 16 24 O -0.57 -24.55 13.96 -3.03 -0.04 -24.59 16 25 H 0.03 1.15 6.34 -2.39 -0.02 1.14 16 26 H 0.05 2.47 7.35 -2.39 -0.02 2.46 16 27 H 0.05 2.15 6.99 -2.39 -0.02 2.14 16 28 H -0.02 -1.12 7.45 -2.39 -0.02 -1.14 16 29 H 0.00 0.06 7.84 -2.39 -0.02 0.04 16 30 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.06 2.03 7.56 -2.38 -0.02 2.01 16 32 H 0.07 2.19 5.93 -2.39 -0.01 2.18 16 33 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.21 5.40 -2.39 -0.01 1.20 16 37 H 0.11 1.51 8.01 -2.39 -0.02 1.49 16 38 H 0.06 1.61 7.13 -2.39 -0.02 1.59 16 39 H 0.08 0.73 8.07 -2.38 -0.02 0.71 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.86 5.81 -2.39 -0.01 0.84 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.03 0.85 6.17 -2.39 -0.01 0.84 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.03 1.12 7.59 -2.38 -0.02 1.10 16 Total: -1.00 -73.08 348.93 2.58 -70.50 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.92 Total: 10.32 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.38 Total: -1.99 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.70 Total: -102.06 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.59 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.08 2.58 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359609202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.671 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds