Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 C 1.53007 * 109.46873 * 119.99798 * 2 1 3 5 5 N 1.46896 * 109.47044 * 62.09146 * 4 2 1 6 6 C 1.46845 * 111.00094 * 176.27001 * 5 4 2 7 7 C 1.53040 * 109.51855 * 174.15476 * 6 5 4 8 8 C 1.53126 * 109.27183 * 59.18822 * 7 6 5 9 9 N 1.46504 * 109.51772 * 182.37568 * 8 7 6 10 10 C 1.34778 * 119.99872 * 204.99777 * 9 8 7 11 11 O 1.21275 * 120.00066 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99741 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.46809 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47126 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00084 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00332 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00323 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99816 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46891 * 90.00422 * 18 16 14 20 20 H 1.48506 * 109.47299 * 210.00364 * 18 16 14 21 21 H 1.48502 * 109.47244 * 330.00457 * 18 16 14 22 22 C 1.53120 * 109.16175 * 302.34483 * 8 7 6 23 23 C 1.46856 * 110.99091 * 52.06908 * 5 4 2 24 24 H 1.08999 * 109.46990 * 60.00051 * 1 2 3 25 25 H 1.08996 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46897 * 300.00274 * 1 2 3 27 27 H 1.08998 * 109.46897 * 239.99726 * 2 1 3 28 28 H 1.08996 * 109.46694 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46875 * 299.99467 * 3 2 1 30 30 H 1.08999 * 109.47121 * 59.99622 * 3 2 1 31 31 H 1.09002 * 109.46979 * 302.09549 * 4 2 1 32 32 H 1.08998 * 109.46863 * 182.08986 * 4 2 1 33 33 H 1.08999 * 109.46034 * 54.14736 * 6 5 4 34 34 H 1.09003 * 109.46253 * 294.17238 * 6 5 4 35 35 H 1.08992 * 109.50390 * 179.12434 * 7 6 5 36 36 H 1.08997 * 109.50142 * 299.25226 * 7 6 5 37 37 H 1.09003 * 109.52559 * 62.25507 * 8 7 6 38 38 H 0.97003 * 120.00001 * 25.00103 * 9 8 7 39 39 H 1.09003 * 109.47389 * 300.00148 * 12 10 9 40 40 H 1.08999 * 109.46950 * 60.00327 * 12 10 9 41 41 H 1.08997 * 109.47363 * 299.99511 * 13 12 10 42 42 H 1.08998 * 109.47680 * 60.00217 * 13 12 10 43 43 H 0.97003 * 120.00263 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.50317 * 177.59988 * 22 8 7 45 45 H 1.08999 * 109.50451 * 297.71664 * 22 8 7 46 46 H 1.09002 * 109.47013 * 65.83192 * 23 5 4 47 47 H 1.08992 * 109.45369 * 305.85474 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5920 -2.1200 1.2244 6 6 2.1369 -2.8676 2.3648 7 6 1.5358 -4.2748 2.3880 8 6 1.8731 -4.9901 1.0767 9 7 1.2524 -6.3171 1.0694 10 6 1.7776 -7.3026 0.3148 11 8 2.7644 -7.0910 -0.3578 12 6 1.1388 -8.6675 0.3068 13 6 1.9251 -9.5931 -0.6235 14 6 1.2859 -10.9579 -0.6320 15 1 0.4070 -11.1463 -0.0333 16 6 1.8238 -11.9663 -1.4032 17 7 1.2663 -13.1574 -1.4102 18 14 3.3445 -11.6407 -2.4381 19 1 4.5601 -11.9413 -1.6398 20 1 3.3174 -12.5071 -3.6440 21 1 3.3648 -10.2151 -2.8532 22 6 1.3370 -4.1664 -0.0975 23 6 1.9438 -2.7624 -0.0485 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6463 -0.2295 2.1389 32 1 3.1294 -0.6889 1.2683 33 1 1.8865 -2.3504 3.2910 34 1 3.2206 -2.9370 2.2692 35 1 1.9521 -4.8346 3.2254 36 1 0.4535 -4.2063 2.4972 37 1 2.9544 -5.0933 0.9857 38 1 0.4633 -6.4865 1.6076 39 1 1.1448 -9.0774 1.3168 40 1 0.1107 -8.5853 -0.0458 41 1 1.9194 -9.1835 -1.6335 42 1 2.9531 -9.6753 -0.2705 43 1 1.6445 -13.8667 -1.9531 44 1 1.6112 -4.6489 -1.0356 45 1 0.2515 -4.0963 -0.0273 46 1 3.0283 -2.8324 -0.1327 47 1 1.5530 -2.1688 -0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359908501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = -61.902618 kcal Electronic energy + Delta-G solvation = -22489.715783 eV Core-core repulsion = 19285.197369 eV Total energy + Delta-G solvation = -3204.518414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03847 -38.82008 -36.37749 -34.14912 -33.44908 -31.59142 -31.07658 -30.72258 -27.41117 -26.73748 -25.50322 -23.58380 -23.01121 -21.10308 -20.42500 -19.82500 -19.42035 -17.20293 -16.73770 -15.95055 -15.71680 -15.39231 -15.28102 -14.92787 -14.50778 -14.09729 -13.91996 -13.78039 -13.35485 -13.18493 -12.76758 -12.63317 -12.55180 -12.53105 -12.40454 -12.12828 -11.57836 -11.42566 -11.38781 -11.27459 -11.19575 -11.02486 -10.94397 -10.67371 -10.50792 -10.13466 -10.02040 -9.76462 -9.20041 -9.12951 -8.81037 -8.56187 -8.49169 -6.01541 -4.00073 3.16152 3.38908 3.44859 3.46595 3.56618 3.60372 4.39006 4.52306 4.54987 4.60272 4.74551 4.82901 4.88134 5.02945 5.14742 5.20546 5.23645 5.32374 5.33978 5.35096 5.37573 5.41780 5.47968 5.57926 5.59040 5.63771 5.68583 5.75377 5.80983 5.87629 5.99945 6.02829 6.11952 6.12603 6.13610 6.22956 6.70978 6.73738 6.81725 6.83809 7.38808 7.45997 7.79438 7.85397 8.52221 8.70729 9.01821 9.61645 11.11306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035286 B = 0.002776 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.325861 B =10084.490870 C =10367.572935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.147 4.147 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.060 3.940 7 C -0.122 4.122 8 C 0.144 3.856 9 N -0.738 5.738 10 C 0.511 3.489 11 O -0.542 6.542 12 C -0.123 4.123 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.126 4.126 23 C 0.053 3.947 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.398 0.602 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 28.615 7.662 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 C -0.205 4.205 4 C -0.067 4.067 5 N -0.261 5.261 6 C -0.068 4.068 7 C -0.160 4.160 8 C 0.039 3.961 9 N -0.390 5.390 10 C 0.299 3.701 11 O -0.418 6.418 12 C -0.163 4.163 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.165 4.165 23 C -0.075 4.075 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.699 28.561 7.132 29.446 hybrid contribution 1.285 -0.044 -0.317 1.324 sum 0.586 28.517 6.815 29.326 Atomic orbital electron populations 1.21733 0.94302 1.02686 1.00898 1.21265 0.97060 0.95724 0.97937 1.21817 1.00787 0.95926 1.01925 1.22171 0.97334 0.88473 0.98764 1.62004 1.59768 1.01674 1.02609 1.21999 0.96828 0.93889 0.94092 1.21850 1.02310 0.94787 0.97098 1.20899 0.98517 0.82254 0.94478 1.46228 1.32826 1.10776 1.49182 1.21531 0.83846 0.86896 0.77809 1.90640 1.26251 1.83234 1.41689 1.21667 1.01078 0.90300 1.03217 1.19358 0.95443 0.94095 0.94706 1.21126 1.13920 0.93414 1.27765 0.90941 1.24976 0.97064 0.94888 0.96367 1.69911 1.40962 1.02382 1.41034 0.86792 0.83605 0.79005 0.80123 1.20275 1.21462 1.18536 1.21983 1.01302 0.93914 0.99311 1.22173 0.98173 0.95120 0.92074 0.93450 0.91401 0.93013 0.90893 0.92893 0.92469 0.92639 0.90715 0.95074 0.90444 0.94715 0.90858 0.90474 0.90115 0.76791 0.89701 0.89632 0.95870 0.96346 0.92740 0.90847 0.90950 0.94824 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.99 37.16 0.33 -0.67 16 2 C -0.10 -0.71 2.44 -90.61 -0.22 -0.93 16 3 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 4 C 0.06 0.45 4.54 -3.82 -0.02 0.44 16 5 N -0.54 -4.70 4.09 -234.67 -0.96 -5.66 16 6 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 7 C -0.12 -1.10 5.57 -26.65 -0.15 -1.25 16 8 C 0.14 1.73 2.52 -67.80 -0.17 1.56 16 9 N -0.74 -9.86 5.08 -53.68 -0.27 -10.13 16 10 C 0.51 9.32 7.80 -10.99 -0.09 9.24 16 11 O -0.54 -12.05 15.64 5.56 0.09 -11.96 16 12 C -0.12 -2.40 5.64 -27.89 -0.16 -2.55 16 13 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 14 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 15 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 18 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 22 C -0.13 -1.47 5.68 -26.65 -0.15 -1.62 16 23 C 0.05 0.52 4.99 -3.83 -0.02 0.50 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.57 7.59 -51.93 -0.39 0.18 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.56 6.06 -51.93 -0.31 0.25 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 38 H 0.40 4.20 8.61 -40.82 -0.35 3.85 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 42 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.76 5.72 -51.93 -0.30 0.47 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -33.24 365.06 -9.24 -42.48 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.86 Total: -2.01 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.84 Total: -8.90 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.46 Total: -43.24 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.24 -9.24 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359908501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.425 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds