Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46839 * 111.00092 * 45.78796 * 5 4 3 7 7 C 1.53039 * 109.52305 * 185.83868 * 6 5 4 8 8 C 1.53125 * 109.27890 * 300.81995 * 7 6 5 9 9 N 1.46503 * 109.57343 * 177.58914 * 8 7 6 10 10 C 1.34768 * 119.99979 * 85.28716 * 9 8 7 11 11 O 1.21281 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99878 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46958 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.46925 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99948 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47210 * 90.00247 * 18 16 14 20 20 H 1.48497 * 109.47022 * 209.99895 * 18 16 14 21 21 H 1.48497 * 109.47298 * 329.99964 * 18 16 14 22 22 C 1.53118 * 109.15877 * 57.65365 * 8 7 6 23 23 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 32 32 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 33 33 H 1.09001 * 109.46400 * 305.85111 * 6 5 4 34 34 H 1.08995 * 109.46502 * 65.82322 * 6 5 4 35 35 H 1.08994 * 109.50793 * 180.87369 * 7 6 5 36 36 H 1.09003 * 109.50071 * 60.75960 * 7 6 5 37 37 H 1.08991 * 109.52310 * 297.74805 * 8 7 6 38 38 H 0.97001 * 119.99996 * 265.28350 * 9 8 7 39 39 H 1.08996 * 109.47267 * 299.99741 * 12 10 9 40 40 H 1.08997 * 109.47145 * 60.00192 * 12 10 9 41 41 H 1.09001 * 109.47571 * 300.00068 * 13 12 10 42 42 H 1.08999 * 109.47341 * 60.00157 * 13 12 10 43 43 H 0.97000 * 120.00247 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.49987 * 182.40758 * 22 8 7 45 45 H 1.09004 * 109.50544 * 62.28642 * 22 8 7 46 46 H 1.09005 * 109.46090 * 294.18098 * 23 5 4 47 47 H 1.09009 * 109.46391 * 54.14781 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.3342 3.6417 0.9833 7 6 3.7668 5.1041 0.8553 8 6 5.2759 5.2075 1.0931 9 7 5.7067 6.5965 0.9154 10 6 5.6227 7.4647 1.9428 11 8 5.1901 7.0963 3.0142 12 6 6.0664 8.8933 1.7602 13 6 5.8670 9.6604 3.0688 14 6 6.3112 11.0889 2.8864 15 1 6.6968 11.4169 1.9324 16 6 6.2254 11.9771 3.9375 17 7 5.7564 11.5776 5.0994 18 14 6.7754 13.7479 3.7112 19 1 5.6266 14.5678 3.2493 20 1 7.2751 14.2801 5.0043 21 1 7.8616 13.8035 2.7001 22 6 6.0056 4.3128 0.0872 23 6 5.5081 2.8735 0.2375 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9337 0.9286 0.8892 32 1 3.9330 0.9287 -0.8908 33 1 2.2625 3.5627 0.8005 34 1 3.5585 3.2832 1.9879 35 1 3.2397 5.7057 1.5957 36 1 3.5302 5.4673 -0.1448 37 1 5.5083 4.8809 2.1066 38 1 6.0524 6.8912 0.0583 39 1 7.1205 8.9138 1.4835 40 1 5.4748 9.3595 0.9724 41 1 4.8128 9.6399 3.3451 42 1 6.4583 9.1943 3.8570 43 1 5.6957 12.2025 5.8388 44 1 7.0779 4.3491 0.2790 45 1 5.8042 4.6636 -0.9250 46 1 5.7222 2.5185 1.2457 47 1 6.0154 2.2364 -0.4871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360103499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = -67.537072 kcal Electronic energy + Delta-G solvation = -22098.457299 eV Core-core repulsion = 18893.694557 eV Total energy + Delta-G solvation = -3204.762742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90248 -38.61110 -36.07086 -34.29002 -33.41301 -31.76208 -31.09678 -30.66923 -28.42554 -25.85572 -24.38110 -23.49482 -22.43501 -21.39470 -20.86735 -20.09414 -19.36546 -16.87895 -16.53674 -15.99948 -15.60906 -15.38102 -15.19779 -14.85935 -14.51333 -14.40128 -13.98074 -13.68316 -13.46872 -13.28926 -12.97820 -12.56814 -12.43708 -12.21234 -12.12639 -11.75672 -11.52963 -11.38245 -11.36634 -11.14565 -11.09750 -10.94734 -10.91028 -10.65311 -10.55713 -10.51489 -9.92536 -9.63225 -9.13975 -8.95939 -8.70530 -8.52599 -8.29980 -5.94194 -3.98437 3.30595 3.34602 3.40325 3.42998 3.55654 3.64793 4.45769 4.49194 4.58761 4.64392 4.73023 4.84434 4.90393 5.03553 5.08605 5.18376 5.28790 5.30653 5.37597 5.40631 5.41732 5.44083 5.51420 5.55896 5.61962 5.64451 5.74827 5.76415 5.84096 5.92628 5.94814 5.99073 6.12126 6.25918 6.28404 6.31247 6.82147 6.86651 6.87805 6.93755 7.76741 7.89237 7.96811 8.09700 8.41329 8.84585 9.10495 9.64905 11.16770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.002450 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.082134 B =11426.260623 C =11861.984016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.052 3.948 7 C -0.127 4.127 8 C 0.144 3.856 9 N -0.740 5.740 10 C 0.510 3.490 11 O -0.536 6.536 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.122 4.122 23 C 0.060 3.940 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.397 0.603 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.035 0.965 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -23.013 -13.961 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.076 4.076 7 C -0.166 4.166 8 C 0.039 3.961 9 N -0.393 5.393 10 C 0.299 3.701 11 O -0.411 6.411 12 C -0.171 4.171 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.161 4.161 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.252 -23.002 -13.427 27.147 hybrid contribution 0.611 0.765 0.317 1.029 sum -4.641 -22.237 -13.110 26.228 Atomic orbital electron populations 1.21764 0.95706 1.01560 1.01978 1.21490 0.96040 0.96674 1.01926 1.21804 0.94647 0.96927 1.02948 1.22134 0.95317 0.89083 1.00683 1.62039 1.03815 1.10411 1.50165 1.22190 0.98974 0.93222 0.93178 1.21995 0.96255 0.95497 1.02834 1.20878 0.93532 0.81975 0.99756 1.46261 1.67698 1.10148 1.15163 1.21553 0.76821 0.88596 0.83168 1.90658 1.44928 1.79191 1.26367 1.21864 1.01355 0.89661 1.04177 1.18893 0.98207 0.93220 0.89718 1.21237 1.42770 0.95076 0.97402 0.92608 1.25034 0.95403 0.98761 0.95270 1.69999 1.45797 1.35076 1.01998 0.86585 0.78862 0.85028 0.77431 1.20681 1.21246 1.19902 1.21851 0.99770 0.94300 1.00143 1.22010 0.88082 0.96849 0.99876 0.92822 0.92703 0.92645 0.91991 0.92179 0.90991 0.91457 0.94978 0.90767 0.89878 0.94747 0.90748 0.91027 0.90111 0.76989 0.90322 0.90293 0.95869 0.95879 0.92976 0.90866 0.90545 0.94648 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.92 16 3 C -0.13 -0.92 4.46 -26.73 -0.12 -1.04 16 4 C 0.06 0.44 5.27 -3.82 -0.02 0.42 16 5 N -0.54 -5.15 4.81 -234.67 -1.13 -6.28 16 6 C 0.05 0.56 4.85 -3.84 -0.02 0.54 16 7 C -0.13 -1.58 5.68 -26.65 -0.15 -1.73 16 8 C 0.14 1.86 2.52 -67.80 -0.17 1.69 16 9 N -0.74 -10.55 5.08 -53.69 -0.27 -10.82 16 10 C 0.51 9.93 7.80 -10.99 -0.09 9.85 16 11 O -0.54 -12.77 15.64 5.56 0.09 -12.69 16 12 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.12 -1.19 5.57 -26.65 -0.15 -1.33 16 23 C 0.06 0.55 5.42 -3.83 -0.02 0.53 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.53 6.21 -51.93 -0.32 0.21 16 31 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 38 H 0.40 4.48 8.61 -40.82 -0.35 4.13 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.59 8.12 -51.92 -0.42 0.17 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -33.47 370.35 -10.16 -43.63 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.93 Total: -0.93 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.21 Total: -8.35 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.66 Total: -44.08 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.47 -10.16 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360103499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.906 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds