Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46839 * 111.00092 * 45.78796 * 5 4 3 7 7 C 1.53039 * 109.52305 * 185.83868 * 6 5 4 8 8 C 1.53125 * 109.27890 * 300.81995 * 7 6 5 9 9 N 1.46503 * 109.57343 * 177.58914 * 8 7 6 10 10 C 1.34768 * 119.99979 * 85.28716 * 9 8 7 11 11 O 1.21281 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99878 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46958 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.46925 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99948 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47210 * 90.00247 * 18 16 14 20 20 H 1.48497 * 109.47022 * 209.99895 * 18 16 14 21 21 H 1.48497 * 109.47298 * 329.99964 * 18 16 14 22 22 C 1.53118 * 109.15877 * 57.65365 * 8 7 6 23 23 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 32 32 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 33 33 H 1.09001 * 109.46400 * 305.85111 * 6 5 4 34 34 H 1.08995 * 109.46502 * 65.82322 * 6 5 4 35 35 H 1.08994 * 109.50793 * 180.87369 * 7 6 5 36 36 H 1.09003 * 109.50071 * 60.75960 * 7 6 5 37 37 H 1.08991 * 109.52310 * 297.74805 * 8 7 6 38 38 H 0.97001 * 119.99996 * 265.28350 * 9 8 7 39 39 H 1.08996 * 109.47267 * 299.99741 * 12 10 9 40 40 H 1.08997 * 109.47145 * 60.00192 * 12 10 9 41 41 H 1.09001 * 109.47571 * 300.00068 * 13 12 10 42 42 H 1.08999 * 109.47341 * 60.00157 * 13 12 10 43 43 H 0.97000 * 120.00247 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.49987 * 182.40758 * 22 8 7 45 45 H 1.09004 * 109.50544 * 62.28642 * 22 8 7 46 46 H 1.09005 * 109.46090 * 294.18098 * 23 5 4 47 47 H 1.09009 * 109.46391 * 54.14781 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.3342 3.6417 0.9833 7 6 3.7668 5.1041 0.8553 8 6 5.2759 5.2075 1.0931 9 7 5.7067 6.5965 0.9154 10 6 5.6227 7.4647 1.9428 11 8 5.1901 7.0963 3.0142 12 6 6.0664 8.8933 1.7602 13 6 5.8670 9.6604 3.0688 14 6 6.3112 11.0889 2.8864 15 1 6.6968 11.4169 1.9324 16 6 6.2254 11.9771 3.9375 17 7 5.7564 11.5776 5.0994 18 14 6.7754 13.7479 3.7112 19 1 5.6266 14.5678 3.2493 20 1 7.2751 14.2801 5.0043 21 1 7.8616 13.8035 2.7001 22 6 6.0056 4.3128 0.0872 23 6 5.5081 2.8735 0.2375 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9337 0.9286 0.8892 32 1 3.9330 0.9287 -0.8908 33 1 2.2625 3.5627 0.8005 34 1 3.5585 3.2832 1.9879 35 1 3.2397 5.7057 1.5957 36 1 3.5302 5.4673 -0.1448 37 1 5.5083 4.8809 2.1066 38 1 6.0524 6.8912 0.0583 39 1 7.1205 8.9138 1.4835 40 1 5.4748 9.3595 0.9724 41 1 4.8128 9.6399 3.3451 42 1 6.4583 9.1943 3.8570 43 1 5.6957 12.2025 5.8388 44 1 7.0779 4.3491 0.2790 45 1 5.8042 4.6636 -0.9250 46 1 5.7222 2.5185 1.2457 47 1 6.0154 2.2364 -0.4871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360103499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = -90.287005 kcal Electronic energy + Delta-G solvation = -22099.443811 eV Core-core repulsion = 18893.694557 eV Total energy + Delta-G solvation = -3205.749253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09852 -39.79729 -36.97499 -35.56802 -35.21007 -33.24451 -32.25922 -31.92976 -29.23483 -27.69219 -25.44042 -24.41968 -23.58658 -22.74052 -21.62482 -21.24143 -20.67221 -18.79794 -17.63345 -17.39841 -16.66651 -16.52343 -16.39247 -16.29136 -15.94305 -15.27073 -14.99168 -14.75761 -14.59304 -14.25956 -14.16621 -13.97079 -13.82627 -13.24354 -13.17849 -13.12641 -12.81647 -12.52074 -12.45604 -12.32105 -12.19258 -12.06533 -11.91824 -11.80951 -11.65131 -11.56730 -11.49922 -11.31190 -11.30386 -10.66275 -10.57283 -10.00530 -9.30475 -8.18199 -6.32421 1.41888 1.44924 1.55871 1.73425 2.25475 2.44988 2.88490 3.14585 3.67898 3.79664 3.95365 4.01437 4.09071 4.09963 4.21211 4.25860 4.37379 4.43616 4.50210 4.52763 4.56595 4.63020 4.63609 4.67558 4.73564 4.86609 4.92762 4.94952 4.98697 5.04538 5.09391 5.13403 5.15004 5.25824 5.28906 5.39563 5.47065 5.48422 5.59195 5.63162 5.85433 6.06906 6.13355 6.17562 6.66000 6.86297 7.37185 7.39450 8.94527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.002450 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.082134 B =11426.260623 C =11861.984016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.056 3.944 5 N -0.541 5.541 6 C 0.059 3.941 7 C -0.122 4.122 8 C 0.141 3.859 9 N -0.714 5.714 10 C 0.511 3.489 11 O -0.591 6.591 12 C -0.120 4.120 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.255 1.255 22 C -0.111 4.111 23 C 0.059 3.941 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.021 0.979 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.416 0.584 39 H 0.105 0.895 40 H 0.104 0.896 41 H -0.019 1.019 42 H -0.019 1.019 43 H 0.263 0.737 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.027 0.973 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -23.253 -17.076 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.160 4.160 4 C -0.071 4.071 5 N -0.266 5.266 6 C -0.069 4.069 7 C -0.161 4.161 8 C 0.036 3.964 9 N -0.366 5.366 10 C 0.300 3.700 11 O -0.471 6.471 12 C -0.159 4.159 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.149 4.149 23 C -0.069 4.069 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.254 0.746 39 H 0.123 0.877 40 H 0.122 0.878 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.045 0.955 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.227 -23.273 -16.622 28.910 hybrid contribution 0.268 0.759 1.284 1.515 sum -3.959 -22.514 -15.338 27.528 Atomic orbital electron populations 1.21773 0.95606 1.01968 1.01753 1.21466 0.96112 0.95911 1.02328 1.21758 0.94322 0.97584 1.02300 1.22197 0.95603 0.88089 1.01239 1.62077 1.04032 1.11235 1.49207 1.22079 0.99689 0.92185 0.92978 1.21904 0.95489 0.96466 1.02199 1.21017 0.94453 0.81367 0.99542 1.45972 1.65908 1.10110 1.14638 1.21342 0.76447 0.88870 0.83365 1.90647 1.47651 1.79973 1.28788 1.21639 1.03519 0.89810 1.00961 1.18685 0.94640 0.94132 0.92083 1.21730 1.42449 0.95606 0.98288 0.90521 1.26174 0.95285 1.04439 0.94764 1.70184 1.47286 1.37135 1.03238 0.85292 0.78954 0.78100 0.77716 1.19686 1.21200 1.17839 1.21802 0.99871 0.93774 0.99478 1.22084 0.87950 0.96674 1.00229 0.92118 0.93254 0.92570 0.91135 0.92191 0.91257 0.92443 0.95120 0.89371 0.89041 0.96103 0.93982 0.89988 0.93083 0.74626 0.87724 0.87791 1.00106 1.00074 0.92874 0.89760 0.88974 0.95462 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.32 5.93 30.59 0.18 -1.14 16 3 C -0.12 -1.62 4.46 30.59 0.14 -1.49 16 4 C 0.06 0.78 5.27 86.30 0.46 1.24 16 5 N -0.54 -9.35 4.81 -896.35 -4.31 -13.66 16 6 C 0.06 1.24 4.85 86.33 0.42 1.66 16 7 C -0.12 -3.04 5.68 30.65 0.17 -2.86 16 8 C 0.14 3.59 2.52 45.07 0.11 3.70 16 9 N -0.71 -19.61 5.08 -442.16 -2.25 -21.86 16 10 C 0.51 20.22 7.80 87.66 0.68 20.90 16 11 O -0.59 -29.80 15.64 -3.03 -0.05 -29.84 16 12 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 13 C 0.04 2.40 4.26 29.85 0.13 2.53 16 14 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.55 5.46 84.66 0.46 -0.09 16 17 N -0.94 -60.36 13.29 21.45 0.28 -60.08 16 18 Si 0.98 44.74 29.54 68.60 2.03 46.77 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 22 C -0.11 -1.88 5.57 30.64 0.17 -1.71 16 23 C 0.06 0.94 5.42 86.32 0.47 1.41 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.87 6.21 -2.39 -0.01 0.86 16 31 H 0.03 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.76 5.81 -2.39 -0.01 1.75 16 34 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 38 H 0.42 8.23 8.61 -92.71 -0.80 7.43 16 39 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 42 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.10 1.19 8.12 -2.38 -0.02 1.17 16 Total: -1.00 -76.50 370.35 0.33 -76.17 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.11 Total: 15.10 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.51 Total: -12.60 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -6.27 Total: -95.59 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.05 Total: -29.84 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -76.50 0.33 -76.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360103499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds