Wall clock time and date at job start Tue Mar 31 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46964 * 2 1 4 4 C 1.52992 * 109.47368 * 120.00105 * 2 1 3 5 5 N 1.46900 * 109.47131 * 174.99767 * 4 2 1 6 6 C 1.47443 * 111.00227 * 290.12352 * 5 4 2 7 7 C 1.54312 * 107.23612 * 236.74273 * 6 5 4 8 8 C 1.55142 * 103.17714 * 337.62814 * 7 6 5 9 9 H 1.08996 * 110.99420 * 277.65160 * 8 7 6 10 10 C 1.53001 * 110.99002 * 153.82761 * 8 7 6 11 11 N 1.46511 * 109.46864 * 66.45903 * 10 8 7 12 12 C 1.34769 * 120.00230 * 179.97438 * 11 10 8 13 13 O 1.21292 * 119.99775 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00319 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.47426 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47108 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99587 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00504 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99556 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47575 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47156 * 120.00075 * 20 18 16 23 23 H 1.48503 * 109.47307 * 239.99566 * 20 18 16 24 24 C 1.47844 * 110.99982 * 169.28196 * 5 4 2 25 25 H 1.09002 * 109.46727 * 299.99979 * 1 2 3 26 26 H 1.08992 * 109.47363 * 59.99592 * 1 2 3 27 27 H 1.09001 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47034 * 240.00473 * 2 1 3 29 29 H 1.09002 * 109.46859 * 60.00365 * 3 2 1 30 30 H 1.08997 * 109.46889 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47030 * 299.99907 * 3 2 1 32 32 H 1.08998 * 109.47419 * 55.00134 * 4 2 1 33 33 H 1.08999 * 109.47551 * 294.99924 * 4 2 1 34 34 H 1.08997 * 109.88254 * 117.33308 * 6 5 4 35 35 H 1.09003 * 109.88840 * 356.15438 * 6 5 4 36 36 H 1.09002 * 110.70596 * 96.10119 * 7 6 5 37 37 H 1.09005 * 110.70742 * 219.16269 * 7 6 5 38 38 H 1.08998 * 109.47295 * 186.45297 * 10 8 7 39 39 H 1.08993 * 109.47685 * 306.46005 * 10 8 7 40 40 H 0.97005 * 119.99554 * 359.97438 * 11 10 8 41 41 H 1.09001 * 109.47391 * 300.00844 * 14 12 11 42 42 H 1.09007 * 109.47051 * 60.00347 * 14 12 11 43 43 H 1.08997 * 109.46932 * 300.00662 * 15 14 12 44 44 H 1.08998 * 109.46474 * 60.00122 * 15 14 12 45 45 H 0.96993 * 120.00207 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.37744 * 265.19940 * 24 5 4 47 47 H 1.09007 * 110.37325 * 27.42750 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5041 -0.8267 1.1902 6 6 3.9240 -1.7736 0.1410 7 6 4.7952 -2.8513 0.8197 8 6 5.2924 -2.1444 2.1081 9 1 6.1575 -1.5152 1.8992 10 6 5.6102 -3.1633 3.2044 11 7 6.7592 -3.9761 2.7974 12 6 7.2216 -4.9450 3.6120 13 8 6.6862 -5.1444 4.6819 14 6 8.4030 -5.7815 3.1931 15 6 8.7218 -6.7994 4.2900 16 6 9.9037 -7.6355 3.8713 17 1 10.3801 -7.4581 2.9184 18 6 10.3768 -8.6266 4.7048 19 7 9.7970 -8.8422 5.8654 20 14 11.8413 -9.6634 4.1855 21 1 12.3088 -9.2242 2.8462 22 1 12.9394 -9.4978 5.1714 23 1 11.4404 -11.0921 4.1265 24 6 4.0549 -1.2832 2.4840 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6056 -1.7198 1.2951 33 1 1.7518 -0.1584 2.1369 34 1 4.5052 -1.2512 -0.6188 35 1 3.0477 -2.2367 -0.3128 36 1 4.1987 -3.7293 1.0675 37 1 5.6356 -3.1255 0.1819 38 1 5.8460 -2.6389 4.1304 39 1 4.7462 -3.8087 3.3622 40 1 7.1871 -3.8168 1.9415 41 1 8.1668 -6.3062 2.2674 42 1 9.2671 -5.1362 3.0346 43 1 8.9582 -6.2743 5.2154 44 1 7.8579 -7.4447 4.4489 45 1 10.1300 -9.5392 6.4519 46 1 4.3574 -0.4293 3.0903 47 1 3.3199 -1.8854 3.0181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360312857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:04 Heat of formation + Delta-G solvation = -66.234999 kcal Electronic energy + Delta-G solvation = -21851.584759 eV Core-core repulsion = 18646.878479 eV Total energy + Delta-G solvation = -3204.706280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87338 -38.88359 -36.35819 -34.37593 -33.43019 -31.56685 -30.77697 -29.64530 -27.42471 -26.76691 -25.51352 -24.23480 -21.88303 -21.33158 -20.89506 -19.71712 -19.43257 -16.93844 -16.74091 -16.17651 -15.58812 -15.52482 -15.11536 -14.68516 -14.55940 -14.37523 -14.01140 -13.62675 -13.33953 -13.07191 -13.05107 -12.68298 -12.55703 -12.22335 -12.12846 -12.06140 -11.69552 -11.38200 -11.23559 -11.17138 -11.13919 -11.01362 -10.94585 -10.87561 -10.81487 -10.56997 -9.94846 -9.65403 -9.16245 -8.99499 -8.76536 -8.61305 -8.31487 -5.95418 -3.99741 3.28372 3.32954 3.39555 3.42710 3.47629 3.66786 4.28751 4.40375 4.48538 4.53195 4.55928 4.64251 4.86285 4.98861 5.11434 5.13815 5.16612 5.28962 5.30488 5.39502 5.39757 5.40682 5.48342 5.55186 5.57018 5.61519 5.66823 5.67591 5.78311 5.84677 5.91597 5.98795 6.08171 6.08433 6.24607 6.26146 6.64212 6.72082 6.78970 6.91197 7.75709 7.87646 7.91167 8.08334 8.39833 8.80744 9.09298 9.63782 11.15590 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052546 B = 0.002221 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.741707 B =12602.795461 C =12780.786209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.138 4.138 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.042 3.958 7 C -0.139 4.139 8 C -0.107 4.107 9 H 0.091 0.909 10 C 0.130 3.870 11 N -0.743 5.743 12 C 0.509 3.491 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.051 3.949 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.083 0.917 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 19.750 -14.007 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.074 4.074 5 N -0.251 5.251 6 C -0.086 4.086 7 C -0.177 4.177 8 C -0.127 4.127 9 H 0.109 0.891 10 C 0.006 3.994 11 N -0.397 5.397 12 C 0.297 3.703 13 O -0.411 6.411 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.078 4.078 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.368 19.985 -13.160 28.991 hybrid contribution 0.597 -1.332 -0.451 1.528 sum -15.771 18.653 -13.612 27.963 Atomic orbital electron populations 1.21835 0.95238 1.01627 1.01910 1.21118 0.95009 0.97242 0.97783 1.21715 1.02191 0.94839 1.00750 1.22372 0.87402 0.98947 0.98715 1.63579 1.09787 1.47276 1.04410 1.22849 0.98627 0.92148 0.94957 1.22873 1.00040 0.98158 0.96654 1.22610 0.98686 0.96459 0.94916 0.89070 1.21136 0.89522 0.92163 0.96605 1.46169 1.33815 1.37121 1.22619 1.21560 0.85383 0.79451 0.83887 1.90671 1.59294 1.68299 1.22879 1.21861 0.93696 0.98429 1.03012 1.18903 0.96647 0.92233 0.92336 1.21269 1.14435 1.17058 1.03697 0.92541 1.25037 0.97086 0.97375 0.94984 1.70008 1.40817 1.32370 1.09650 0.86530 0.82642 0.80192 0.78556 1.19755 1.21024 1.21035 1.23058 0.95136 0.98070 0.91491 0.92635 0.92502 0.92882 0.91303 0.93186 0.91459 0.93542 0.94688 0.90846 0.90505 0.92679 0.91131 0.90481 0.91643 0.91976 0.76981 0.90306 0.90263 0.95828 0.95859 0.93013 0.89849 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.62 2.89 -90.62 -0.26 -0.88 16 3 C -0.14 -0.93 9.08 37.16 0.34 -0.59 16 4 C 0.05 0.40 3.92 -3.83 -0.02 0.39 16 5 N -0.53 -4.34 4.61 -230.94 -1.07 -5.40 16 6 C 0.04 0.33 6.13 -2.84 -0.02 0.31 16 7 C -0.14 -1.14 6.10 -24.91 -0.15 -1.30 16 8 C -0.11 -0.95 3.12 -88.22 -0.28 -1.23 16 9 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 10 C 0.13 1.58 5.14 -4.04 -0.02 1.56 16 11 N -0.74 -10.28 5.41 -60.29 -0.33 -10.61 16 12 C 0.51 9.86 7.83 -10.99 -0.09 9.77 16 13 O -0.54 -12.85 15.98 5.55 0.09 -12.76 16 14 C -0.13 -2.66 5.64 -27.88 -0.16 -2.81 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.05 0.43 6.17 -2.04 -0.01 0.42 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.03 0.27 7.96 -51.93 -0.41 -0.14 16 33 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.41 6.94 -51.93 -0.36 0.05 16 36 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 40 H 0.40 4.31 8.34 -40.82 -0.34 3.97 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.44 7.72 -51.93 -0.40 0.04 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -33.53 374.10 -9.79 -43.32 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -9.00 Total: -2.24 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.85 Total: -7.81 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.65 Total: -42.92 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.53 -9.79 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.912 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds