Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 N 1.46894 * 109.47317 * 184.99601 * 4 2 1 6 6 C 1.47448 * 110.99954 * 69.87113 * 5 4 2 7 7 C 1.54322 * 107.23223 * 123.25700 * 6 5 4 8 8 C 1.55137 * 103.01838 * 22.29040 * 7 6 5 9 9 H 1.08996 * 110.99667 * 82.47171 * 8 7 6 10 10 C 1.52998 * 110.98867 * 206.25396 * 8 7 6 11 11 N 1.46501 * 109.47158 * 293.54225 * 10 8 7 12 12 C 1.34781 * 120.00065 * 179.97438 * 11 10 8 13 13 O 1.21278 * 120.00143 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99750 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.46982 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46982 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00434 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99691 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47034 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47260 * 119.99838 * 20 18 16 23 23 H 1.48499 * 109.47003 * 240.00045 * 20 18 16 24 24 C 1.47845 * 111.00582 * 190.71538 * 5 4 2 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 33 33 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 34 34 H 1.08994 * 109.89072 * 242.66815 * 6 5 4 35 35 H 1.08999 * 109.88626 * 3.85424 * 6 5 4 36 36 H 1.09006 * 110.69997 * 140.66785 * 7 6 5 37 37 H 1.09002 * 110.70567 * 263.90272 * 7 6 5 38 38 H 1.09002 * 109.47517 * 53.54108 * 10 8 7 39 39 H 1.09001 * 109.47533 * 173.54403 * 10 8 7 40 40 H 0.97000 * 119.99729 * 0.02562 * 11 10 8 41 41 H 1.08996 * 109.47352 * 300.00139 * 14 12 11 42 42 H 1.09006 * 109.47178 * 60.00199 * 14 12 11 43 43 H 1.08996 * 109.47400 * 300.00366 * 15 14 12 44 44 H 1.09006 * 109.46793 * 60.00220 * 15 14 12 45 45 H 0.96997 * 119.99927 * 180.02562 * 19 18 16 46 46 H 1.09005 * 110.36991 * 332.46605 * 24 5 4 47 47 H 1.09001 * 110.37269 * 94.80485 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 3.9240 -1.7734 -0.1412 7 6 4.7952 -2.8512 -0.8201 8 6 5.2883 -2.1414 -2.1085 9 1 6.1539 -1.5124 -1.9010 10 6 5.6040 -3.1579 -3.2076 11 7 6.7546 -3.9706 -2.8053 12 6 7.2150 -4.9384 -3.6226 13 8 6.6769 -5.1362 -4.6914 14 6 8.3982 -5.7746 -3.2085 15 6 8.7132 -6.7919 -4.3071 16 6 9.8969 -7.6278 -3.8932 17 1 10.3763 -7.4514 -2.9416 18 6 10.3679 -8.6178 -4.7294 19 7 9.7845 -8.8322 -5.8884 20 14 11.8346 -9.6544 -4.2161 21 1 12.3062 -9.2164 -2.8778 22 1 11.4347 -11.0832 -4.1574 23 1 12.9295 -9.4870 -5.2053 24 6 4.0549 -1.2830 -2.4844 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6055 -1.7197 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 4.5052 -1.2511 0.6186 35 1 3.0478 -2.2366 0.3124 36 1 5.6373 -3.1231 -0.1836 37 1 4.1987 -3.7292 -1.0680 38 1 4.7401 -3.8038 -3.3642 39 1 5.8368 -2.6317 -4.1333 40 1 7.1847 -3.8126 -1.9503 41 1 9.2624 -5.1291 -3.0519 42 1 8.1651 -6.3007 -2.2826 43 1 7.8490 -7.4374 -4.4632 44 1 8.9462 -6.2662 -5.2331 45 1 10.1156 -9.5289 -6.4765 46 1 3.3205 -1.8868 -3.0176 47 1 4.3573 -0.4290 -3.0905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360312858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -66.243216 kcal Electronic energy + Delta-G solvation = -21855.259393 eV Core-core repulsion = 18650.552756 eV Total energy + Delta-G solvation = -3204.706637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89164 -38.88603 -36.36625 -34.37542 -33.43037 -31.56852 -30.77687 -29.66159 -27.42406 -26.76589 -25.51130 -24.23026 -21.88819 -21.32892 -20.89483 -19.71760 -19.43074 -16.94111 -16.74650 -16.17894 -15.58763 -15.52499 -15.11374 -14.68402 -14.55873 -14.37508 -14.01449 -13.62814 -13.33899 -13.07248 -13.05073 -12.68298 -12.55579 -12.22312 -12.12771 -12.06032 -11.69985 -11.38703 -11.23509 -11.17358 -11.13956 -11.01270 -10.94587 -10.87316 -10.81631 -10.56994 -9.94852 -9.65400 -9.16243 -8.99500 -8.76466 -8.61237 -8.31492 -5.95440 -3.99722 3.28434 3.32970 3.39564 3.42739 3.47909 3.66958 4.28608 4.40729 4.48533 4.53160 4.56176 4.64291 4.86388 4.98754 5.12128 5.13993 5.16709 5.29046 5.30513 5.39493 5.39835 5.40701 5.48371 5.55121 5.57065 5.61550 5.66828 5.67471 5.78351 5.84741 5.91612 5.98844 6.08220 6.08450 6.24620 6.26219 6.64205 6.72173 6.79079 6.91223 7.75720 7.87641 7.91230 8.08315 8.39859 8.80788 9.09319 9.63770 11.15562 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052600 B = 0.002222 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.188866 B =12596.217941 C =12773.846463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.138 4.138 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.042 3.958 7 C -0.139 4.139 8 C -0.108 4.108 9 H 0.091 0.909 10 C 0.130 3.870 11 N -0.743 5.743 12 C 0.509 3.491 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.050 3.950 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.050 0.950 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.121 19.721 14.066 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.074 4.074 5 N -0.251 5.251 6 C -0.086 4.086 7 C -0.177 4.177 8 C -0.127 4.127 9 H 0.109 0.891 10 C 0.006 3.994 11 N -0.397 5.397 12 C 0.297 3.703 13 O -0.411 6.411 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.078 4.078 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.335 19.959 13.219 28.981 hybrid contribution 0.599 -1.333 0.446 1.528 sum -15.736 18.626 13.665 27.951 Atomic orbital electron populations 1.21836 0.95240 1.01627 1.01908 1.21116 0.95008 0.97241 0.97785 1.21714 1.02193 0.94839 1.00751 1.22372 0.87407 0.98945 0.98712 1.63581 1.09789 1.47290 1.04402 1.22852 0.98635 0.92156 0.94958 1.22878 1.00044 0.98154 0.96624 1.22534 0.98748 0.96487 0.94927 0.89073 1.21147 0.89491 0.92187 0.96623 1.46170 1.33693 1.37206 1.22664 1.21561 0.85428 0.79445 0.83846 1.90668 1.59223 1.68277 1.22965 1.21861 0.93675 0.98423 1.03041 1.18903 0.96654 0.92238 0.92323 1.21270 1.14309 1.17135 1.03750 0.92541 1.25039 0.97084 0.97377 0.94984 1.70009 1.40785 1.32391 1.09655 0.86529 0.82659 0.80190 0.78542 1.19754 1.21035 1.21022 1.22981 0.95169 0.98086 0.91519 0.92635 0.92883 0.92504 0.91303 0.93538 0.91459 0.93192 0.94690 0.90847 0.90503 0.92682 0.90452 0.91110 0.91982 0.91649 0.76981 0.90257 0.90312 0.95863 0.95827 0.93015 0.93138 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.62 2.89 -90.62 -0.26 -0.88 16 3 C -0.14 -0.93 9.08 37.16 0.34 -0.59 16 4 C 0.05 0.40 3.93 -3.83 -0.02 0.39 16 5 N -0.53 -4.34 4.61 -231.25 -1.07 -5.40 16 6 C 0.04 0.32 6.13 -2.83 -0.02 0.31 16 7 C -0.14 -1.14 6.12 -24.91 -0.15 -1.29 16 8 C -0.11 -0.96 3.10 -88.48 -0.27 -1.23 16 9 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 10 C 0.13 1.58 5.12 -4.04 -0.02 1.56 16 11 N -0.74 -10.28 5.41 -60.29 -0.33 -10.61 16 12 C 0.51 9.86 7.83 -10.98 -0.09 9.77 16 13 O -0.54 -12.84 15.98 5.56 0.09 -12.75 16 14 C -0.13 -2.66 5.64 -27.88 -0.16 -2.81 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.05 0.43 6.15 -2.30 -0.01 0.42 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.03 0.27 7.96 -51.93 -0.41 -0.14 16 33 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.41 6.94 -51.93 -0.36 0.05 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 38 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.31 8.34 -40.82 -0.34 3.97 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.05 0.45 7.70 -51.93 -0.40 0.04 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -33.53 374.04 -9.80 -43.33 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.99 Total: -2.23 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.85 Total: -7.82 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.66 Total: -42.92 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.53 -9.80 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.917 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds