Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 C 1.53005 * 109.47170 * 239.99673 * 2 1 3 5 5 N 1.46500 * 109.46655 * 60.00461 * 4 2 1 6 6 C 1.34781 * 119.99492 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99749 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.46781 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47116 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99893 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00338 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99819 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00048 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47439 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47253 * 120.00241 * 14 12 10 17 17 H 1.48498 * 109.47292 * 240.00037 * 14 12 10 18 18 C 1.53005 * 109.46952 * 120.00098 * 2 1 3 19 19 N 1.46901 * 109.47121 * 284.94714 * 18 2 1 20 20 C 1.48538 * 110.99791 * 58.72694 * 19 18 2 21 21 C 1.54942 * 103.22415 * 159.72305 * 20 19 18 22 22 C 1.54602 * 102.92156 * 322.58807 * 21 20 19 23 23 C 1.47900 * 111.00101 * 176.12746 * 19 18 2 24 24 H 1.08999 * 109.47155 * 322.81804 * 1 2 3 25 25 H 1.09000 * 109.47293 * 82.81498 * 1 2 3 26 26 H 1.09001 * 109.47367 * 202.81412 * 1 2 3 27 27 H 1.08995 * 109.47143 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46779 * 300.00272 * 3 2 1 29 29 H 1.09004 * 109.46811 * 59.99568 * 3 2 1 30 30 H 1.08999 * 109.46891 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47247 * 300.00234 * 4 2 1 32 32 H 0.96991 * 120.00206 * 359.97438 * 5 4 2 33 33 H 1.08999 * 109.46944 * 299.99327 * 8 6 5 34 34 H 1.09000 * 109.47401 * 59.99650 * 8 6 5 35 35 H 1.08998 * 109.47561 * 299.99432 * 9 8 6 36 36 H 1.09004 * 109.47658 * 60.00049 * 9 8 6 37 37 H 0.96999 * 119.99535 * 179.97438 * 13 12 10 38 38 H 1.08994 * 109.47152 * 44.94340 * 18 2 1 39 39 H 1.08998 * 109.47261 * 164.94804 * 18 2 1 40 40 H 1.08994 * 110.67181 * 278.15462 * 20 19 18 41 41 H 1.09000 * 110.66620 * 41.29588 * 20 19 18 42 42 H 1.09003 * 110.72259 * 204.23218 * 21 20 19 43 43 H 1.08999 * 110.72080 * 80.94331 * 21 20 19 44 44 H 1.09001 * 110.30725 * 263.04423 * 22 21 20 45 45 H 1.08992 * 110.39044 * 140.91835 * 22 21 20 46 46 H 1.08995 * 109.91318 * 333.50605 * 23 19 18 47 47 H 1.09002 * 109.91736 * 94.60613 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8769 -0.4915 -3.6695 7 8 2.5741 -1.4776 -3.7807 8 6 1.3751 0.2193 -4.9000 9 6 1.8850 -0.5021 -6.1491 10 6 1.3828 0.2083 -7.3797 11 1 0.7622 1.0867 -7.2806 12 6 1.7162 -0.2626 -8.6319 13 7 2.4722 -1.3320 -8.7525 14 14 1.0942 0.6184 -10.1571 15 1 0.2697 1.7855 -9.7531 16 1 2.2495 1.0851 -10.9650 17 1 0.2693 -0.3146 -10.9659 18 6 2.0399 -0.7213 1.2493 19 7 1.8663 0.1472 2.4213 20 6 0.4392 0.5167 2.6033 21 6 0.3708 0.9446 4.0908 22 6 1.3316 -0.0505 4.7814 23 6 2.2633 -0.5521 3.6626 24 1 -0.3633 0.8187 0.6211 25 1 -0.3634 0.1285 -1.0196 26 1 -0.3634 -0.9473 0.3985 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 0.9938 0.7577 -2.3564 33 1 0.2851 0.2201 -4.9000 34 1 1.7392 1.2467 -4.9001 35 1 2.9750 -0.5026 -6.1490 36 1 1.5212 -1.5297 -6.1494 37 1 2.7064 -1.6634 -9.6335 38 1 1.4753 -1.6424 1.3929 39 1 3.0967 -0.9583 1.1261 40 1 0.1708 1.3478 1.9512 41 1 -0.2068 -0.3419 2.4199 42 1 -0.6423 0.8342 4.4777 43 1 0.7224 1.9689 4.2140 44 1 0.7716 -0.8823 5.2087 45 1 1.9084 0.4543 5.5563 46 1 2.1459 -1.6283 3.5363 47 1 3.2998 -0.3178 3.9056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360472725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -46.427841 kcal Electronic energy + Delta-G solvation = -22527.422511 eV Core-core repulsion = 19323.575134 eV Total energy + Delta-G solvation = -3203.847377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19593 -38.97220 -36.86541 -33.46553 -33.36249 -31.33259 -30.81650 -29.31951 -27.41949 -27.06404 -26.01684 -24.56739 -21.67675 -21.24330 -21.05230 -19.70917 -19.06866 -16.94952 -16.54823 -16.24091 -15.65841 -15.42595 -15.14495 -14.71035 -14.39613 -14.19787 -13.96400 -13.71991 -13.62679 -13.03244 -12.89671 -12.66441 -12.30758 -12.15162 -12.03867 -11.79319 -11.74873 -11.61221 -11.34575 -11.11539 -10.94994 -10.92184 -10.88167 -10.77437 -10.57616 -10.48517 -9.92459 -9.62848 -9.13193 -8.96019 -8.72141 -8.67741 -8.29723 -5.93803 -3.97952 3.33034 3.34196 3.40662 3.43823 3.47775 3.81236 4.28695 4.33471 4.49601 4.54343 4.61920 4.63702 4.76775 4.92659 5.11546 5.19266 5.24286 5.29247 5.40728 5.41125 5.45613 5.47207 5.50244 5.54814 5.60551 5.67579 5.72189 5.78111 5.82116 5.83304 5.98071 6.00387 6.18443 6.26755 6.27882 6.29596 6.58345 6.71363 6.82543 6.94038 7.77628 7.90044 7.96198 8.10387 8.41880 8.85517 9.11217 9.65438 11.17231 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051497 B = 0.002523 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.587956 B =11093.343294 C =11382.996133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.073 4.073 3 C -0.131 4.131 4 C 0.132 3.868 5 N -0.741 5.741 6 C 0.508 3.492 7 O -0.536 6.536 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.058 3.942 19 N -0.510 5.510 20 C 0.026 3.974 21 C -0.128 4.128 22 C -0.131 4.131 23 C 0.034 3.966 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 5.090 28.071 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.074 4.074 3 C -0.188 4.188 4 C 0.007 3.993 5 N -0.396 5.396 6 C 0.297 3.703 7 O -0.412 6.412 8 C -0.170 4.170 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.070 4.070 19 N -0.234 5.234 20 C -0.102 4.102 21 C -0.166 4.166 22 C -0.169 4.169 23 C -0.094 4.094 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.882 4.686 27.752 28.411 hybrid contribution -1.002 -0.090 -0.696 1.223 sum -4.885 4.596 27.056 27.875 Atomic orbital electron populations 1.22431 0.94388 1.02197 1.02704 1.20774 0.95943 0.97059 0.93582 1.21776 1.01425 0.94069 1.01575 1.21186 0.98980 0.95756 0.83389 1.46231 1.55223 1.32551 1.05571 1.21542 0.79556 0.84626 0.84608 1.90665 1.37327 1.26400 1.86798 1.21854 1.01346 1.00388 0.93403 1.18898 0.97113 0.95595 0.88488 1.21271 1.31742 1.12337 0.91024 0.92568 1.25037 0.95223 0.95081 0.99155 1.70014 1.36636 1.22894 1.23322 0.86534 0.78591 0.79621 0.83198 1.19762 1.21032 1.21042 1.22301 1.01566 0.93452 0.89703 1.64798 1.18159 1.38591 1.01884 1.23718 0.89497 1.00525 0.96411 1.22544 0.99207 0.99781 0.95065 1.22386 0.97585 0.99065 0.97883 1.22862 1.00117 0.96626 0.89794 0.91135 0.92075 0.92744 0.92499 0.93157 0.91266 0.91773 0.92097 0.76885 0.90370 0.90312 0.95833 0.95867 0.93035 0.94346 0.90269 0.88916 0.93400 0.91236 0.90785 0.91705 0.91095 0.93851 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 7.19 37.16 0.27 -1.08 16 2 C -0.07 -0.68 0.53 -154.50 -0.08 -0.76 16 3 C -0.13 -1.21 7.78 37.16 0.29 -0.92 16 4 C 0.13 1.67 4.50 -4.04 -0.02 1.66 16 5 N -0.74 -10.58 4.71 -60.29 -0.28 -10.86 16 6 C 0.51 10.00 7.83 -10.98 -0.09 9.92 16 7 O -0.54 -12.99 15.98 5.56 0.09 -12.90 16 8 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.06 0.52 4.15 -3.82 -0.02 0.50 16 19 N -0.51 -4.17 4.29 -230.45 -0.99 -5.16 16 20 C 0.03 0.18 4.20 -1.89 -0.01 0.17 16 21 C -0.13 -0.78 7.06 -24.86 -0.18 -0.95 16 22 C -0.13 -0.79 6.93 -25.37 -0.18 -0.96 16 23 C 0.03 0.25 6.70 -2.75 -0.02 0.23 16 24 H 0.07 0.50 4.84 -51.93 -0.25 0.25 16 25 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 26 H 0.05 0.46 7.20 -51.93 -0.37 0.09 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.46 6.86 -51.93 -0.36 0.10 16 29 H 0.07 0.60 5.77 -51.93 -0.30 0.30 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 4.59 6.32 -40.82 -0.26 4.33 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.04 0.34 7.60 -51.93 -0.39 -0.05 16 39 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 40 H 0.09 0.64 4.64 -51.93 -0.24 0.40 16 41 H 0.05 0.35 6.88 -51.93 -0.36 -0.01 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.04 0.31 7.67 -51.93 -0.40 -0.09 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -33.73 356.50 -9.10 -42.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.30 Total: -1.10 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.71 Total: -8.01 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.54 Total: -43.05 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.73 -9.10 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360472725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.589 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds