Wall clock time and date at job start Tue Mar 31 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46566 * 2 1 4 4 C 1.52997 * 109.46980 * 119.99465 * 2 1 3 5 5 N 1.46503 * 109.47267 * 65.97916 * 4 2 1 6 6 C 1.46499 * 119.99986 * 82.49538 * 5 4 2 7 7 C 1.50699 * 109.46775 * 90.00429 * 6 5 4 8 8 H 1.07998 * 120.00523 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99909 * 180.27955 * 7 6 5 10 10 N 1.31515 * 119.99879 * 359.72155 * 9 7 6 11 11 Si 1.86794 * 120.00044 * 179.72309 * 9 7 6 12 12 H 1.48493 * 109.47468 * 359.97438 * 11 9 7 13 13 H 1.48510 * 109.46883 * 119.99669 * 11 9 7 14 14 H 1.48500 * 109.47441 * 239.99435 * 11 9 7 15 15 C 1.34774 * 120.00222 * 262.50146 * 5 4 2 16 16 O 1.21273 * 120.00245 * 184.46157 * 15 5 4 17 17 C 1.50708 * 119.99777 * 4.45923 * 15 5 4 18 18 C 1.52997 * 109.47085 * 187.02198 * 17 15 5 19 19 H 1.09000 * 110.01779 * 305.69986 * 18 17 15 20 20 C 1.53875 * 110.03204 * 67.09089 * 18 17 15 21 21 C 1.54265 * 106.59669 * 119.28491 * 20 18 17 22 22 C 1.54891 * 104.19686 * 23.61097 * 21 20 18 23 23 H 1.09003 * 110.75343 * 80.37365 * 22 21 20 24 24 N 1.46896 * 110.75570 * 203.55671 * 22 21 20 25 25 C 1.54264 * 110.03419 * 184.31208 * 18 17 15 26 26 H 1.08994 * 109.47265 * 296.04836 * 1 2 3 27 27 H 1.09001 * 109.47016 * 56.05029 * 1 2 3 28 28 H 1.09001 * 109.46874 * 176.04626 * 1 2 3 29 29 H 1.08994 * 109.47253 * 239.99894 * 2 1 3 30 30 H 1.09004 * 109.46570 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46830 * 299.99348 * 3 2 1 32 32 H 1.08994 * 109.47421 * 59.99997 * 3 2 1 33 33 H 1.09000 * 109.47311 * 305.98181 * 4 2 1 34 34 H 1.09000 * 109.47053 * 185.97676 * 4 2 1 35 35 H 1.09005 * 109.46884 * 330.00469 * 6 5 4 36 36 H 1.08996 * 109.47448 * 210.00663 * 6 5 4 37 37 H 0.97004 * 120.00309 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.47126 * 307.02467 * 17 15 5 39 39 H 1.09000 * 109.46833 * 67.02341 * 17 15 5 40 40 H 1.09002 * 110.03350 * 238.56532 * 20 18 17 41 41 H 1.08992 * 110.03186 * 0.02562 * 20 18 17 42 42 H 1.09003 * 110.48751 * 142.28434 * 21 20 18 43 43 H 1.08996 * 110.48808 * 264.79659 * 21 20 18 44 44 H 1.00898 * 111.00654 * 298.54360 * 24 22 21 45 45 H 1.00902 * 111.00132 * 62.50650 * 24 22 21 46 46 H 1.09003 * 110.48213 * 335.78282 * 25 18 17 47 47 H 1.08998 * 110.49266 * 98.42254 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6727 -2.1376 1.1797 6 6 2.4990 -3.0717 0.4109 7 6 3.5649 -3.6518 1.3044 8 1 3.6215 -3.3542 2.3411 9 6 4.4719 -4.5579 0.7969 10 7 4.4034 -4.9199 -0.4656 11 14 5.7979 -5.2711 1.9024 12 1 5.6602 -4.7060 3.2687 13 1 5.6527 -6.7480 1.9601 14 1 7.1354 -4.9262 1.3571 15 6 0.5746 -2.5815 1.8227 16 8 0.3149 -3.7660 1.8327 17 6 -0.3307 -1.6057 2.5295 18 6 -1.3932 -2.3744 3.3175 19 1 -1.9203 -3.0642 2.6583 20 6 -0.7350 -3.1487 4.4729 21 6 -1.3559 -2.6065 5.7768 22 6 -2.7206 -2.0230 5.3337 23 1 -3.4624 -2.8144 5.2261 24 7 -3.1841 -1.0035 6.2843 25 6 -2.3919 -1.3889 3.9585 26 1 -0.3633 0.4512 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.5919 -0.2728 2.1360 34 1 3.1248 -0.6294 1.3044 35 1 2.9684 -2.5433 -0.4189 36 1 1.8735 -3.8754 0.0226 37 1 5.0412 -5.5577 -0.8226 38 1 0.2576 -0.9943 3.2137 39 1 -0.8169 -0.9636 1.7950 40 1 -0.9434 -4.2141 4.3750 41 1 0.3412 -2.9764 4.4725 42 1 -1.5013 -3.4138 6.4947 43 1 -0.7257 -1.8264 6.2039 44 1 -3.3194 -1.3997 7.2023 45 1 -2.5453 -0.2232 6.3178 46 1 -1.9305 -0.4101 4.0904 47 1 -3.2924 -1.3081 3.3498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379050667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:25 Heat of formation + Delta-G solvation = -65.317000 kcal Electronic energy + Delta-G solvation = -23621.804518 eV Core-core repulsion = 20417.138045 eV Total energy + Delta-G solvation = -3204.666473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.68855 -38.15529 -36.24375 -33.82627 -33.16820 -32.22926 -30.15699 -28.23642 -27.23049 -27.01878 -25.61623 -24.56503 -22.50333 -20.57141 -20.16170 -19.68778 -17.97848 -16.57109 -16.47294 -16.34199 -15.53194 -15.23030 -14.92587 -14.53567 -14.41832 -14.06958 -13.37431 -13.28337 -13.21564 -12.74513 -12.51843 -12.32723 -12.21368 -11.90137 -11.80016 -11.58225 -11.31399 -11.25475 -10.98940 -10.95128 -10.89213 -10.74400 -10.69927 -10.52947 -10.46526 -10.28733 -10.12042 -10.07884 -9.56056 -8.81998 -8.73357 -8.41644 -7.57153 -6.02138 -4.06140 3.29970 3.37445 3.41039 3.53203 3.97886 4.34419 4.47140 4.63776 4.72535 4.97919 5.06465 5.12981 5.16412 5.28582 5.31948 5.40894 5.44340 5.50317 5.60143 5.67428 5.71203 5.73010 5.77960 5.81610 5.85946 5.92293 5.96380 6.07922 6.13013 6.20502 6.21060 6.27706 6.29512 6.47102 6.53887 6.57592 6.63162 6.98068 7.12447 7.26140 7.47837 7.61313 7.94962 8.27323 8.51156 8.94463 9.19199 9.58939 11.05886 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.005298 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.371655 B = 5283.641030 C = 6714.158484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.247 3.753 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.505 3.495 16 O -0.540 6.540 17 C -0.147 4.147 18 C -0.075 4.075 19 H 0.081 0.919 20 C -0.108 4.108 21 C -0.160 4.160 22 C 0.085 3.915 23 H 0.087 0.913 24 N -0.844 5.844 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.339 0.661 45 H 0.339 0.661 46 H 0.066 0.934 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 12.547 7.671 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.200 4.200 4 C -0.008 4.008 5 N -0.329 5.329 6 C 0.128 3.872 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.291 3.709 16 O -0.417 6.417 17 C -0.187 4.187 18 C -0.094 4.094 19 H 0.099 0.901 20 C -0.146 4.146 21 C -0.200 4.200 22 C -0.027 4.027 23 H 0.105 0.895 24 N -0.372 5.372 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.085 0.915 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.443 11.851 7.056 17.921 hybrid contribution 1.931 -0.630 1.003 2.266 sum -9.512 11.221 8.059 16.773 Atomic orbital electron populations 1.22042 0.95752 1.01771 1.01042 1.21567 0.95832 0.96024 1.00230 1.21761 1.01190 0.95735 1.01322 1.21531 1.00952 0.81854 0.96485 1.48209 1.25713 1.08423 1.50552 1.19211 0.89378 0.87952 0.90641 1.21465 1.12834 1.24909 0.96781 0.92563 1.24927 0.97843 0.96272 0.95094 1.69943 1.37004 1.33449 1.13096 0.86478 0.81352 0.79068 0.80727 1.19891 1.20910 1.21017 1.20346 0.81700 0.89184 0.79636 1.90658 1.73231 1.17244 1.60584 1.22218 0.97328 0.98858 1.00320 1.21496 0.94925 0.96384 0.96625 0.90060 1.22024 1.00015 1.00173 0.92397 1.23221 0.97773 1.00535 0.98473 1.22493 0.94332 0.93478 0.92386 0.89523 1.58861 1.54293 1.11343 1.12689 1.22457 0.98824 0.98431 0.95210 0.92593 0.93051 0.92364 0.90466 0.92493 0.92868 0.92922 0.91539 0.90442 0.95211 0.94155 0.92858 0.90084 0.88429 0.91402 0.91776 0.92088 0.92130 0.84889 0.84887 0.91530 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.39 37.16 0.27 -1.57 16 2 C -0.12 -1.61 3.10 -90.62 -0.28 -1.89 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.12 1.87 4.88 -4.04 -0.02 1.85 16 5 N -0.60 -12.42 2.25 -175.06 -0.39 -12.81 16 6 C 0.25 6.45 5.14 -5.19 -0.03 6.43 16 7 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.50 10.24 6.17 -10.98 -0.07 10.17 16 16 O -0.54 -13.34 14.91 5.56 0.08 -13.26 16 17 C -0.15 -2.14 3.28 -27.88 -0.09 -2.23 16 18 C -0.07 -1.03 2.55 -89.50 -0.23 -1.26 16 19 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 20 C -0.11 -1.57 5.55 -25.61 -0.14 -1.72 16 21 C -0.16 -1.80 6.51 -25.07 -0.16 -1.96 16 22 C 0.08 0.88 4.05 -65.68 -0.27 0.61 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 N -0.84 -7.48 9.40 -2.95 -0.03 -7.51 16 25 C -0.11 -1.21 6.02 -25.03 -0.15 -1.36 16 26 H 0.06 0.60 6.69 -51.93 -0.35 0.25 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.84 6.46 -51.93 -0.34 0.51 16 29 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.90 6.00 -51.93 -0.31 0.59 16 34 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 35 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 36 H 0.04 1.19 7.49 -51.93 -0.39 0.81 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 1.07 6.88 -51.93 -0.36 0.71 16 39 H 0.10 1.24 4.26 -51.93 -0.22 1.02 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.07 7.38 -51.93 -0.38 0.68 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.34 2.53 9.07 -39.29 -0.36 2.18 16 45 H 0.34 2.68 8.87 -39.29 -0.35 2.33 16 46 H 0.07 0.67 7.72 -51.93 -0.40 0.27 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -32.19 361.37 -8.87 -41.06 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.45 Total: 3.74 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.24 Total: -7.68 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.32 Total: -46.36 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.19 -8.87 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379050667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.259 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds