Wall clock time and date at job start Tue Mar 31 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 10 10 C 1.53000 * 109.47174 * 60.00061 * 8 6 5 11 11 N 1.46903 * 109.47066 * 180.02562 * 8 6 5 12 12 C 1.46845 * 111.00026 * 299.20822 * 11 8 6 13 13 C 1.53032 * 109.52588 * 174.15972 * 12 11 8 14 14 C 1.53119 * 109.27797 * 59.17930 * 13 12 11 15 15 C 1.50701 * 109.52346 * 182.44273 * 14 13 12 16 16 H 1.08002 * 119.99889 * 119.68542 * 15 14 13 17 17 C 1.37882 * 120.00050 * 299.68222 * 15 14 13 18 18 N 1.31515 * 119.99601 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99781 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47116 * 60.00424 * 19 17 15 21 21 H 1.48507 * 109.46810 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47494 * 299.99913 * 19 17 15 23 23 C 1.53124 * 109.16257 * 302.34700 * 14 13 12 24 24 C 1.46848 * 110.99762 * 175.00005 * 11 8 6 25 25 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 27 27 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 29 29 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 30 30 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 31 31 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 32 32 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 33 33 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 34 34 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 35 35 H 1.08998 * 109.47223 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47095 * 299.99934 * 10 8 6 37 37 H 1.09000 * 109.47156 * 60.00213 * 10 8 6 38 38 H 1.09000 * 109.46510 * 294.18030 * 12 11 8 39 39 H 1.09009 * 109.45921 * 54.14476 * 12 11 8 40 40 H 1.09008 * 109.50418 * 299.24020 * 13 12 11 41 41 H 1.08994 * 109.50733 * 179.12306 * 13 12 11 42 42 H 1.08999 * 109.52313 * 62.25095 * 14 13 12 43 43 H 0.96996 * 119.99606 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.50194 * 297.71564 * 23 14 13 45 45 H 1.09001 * 109.50144 * 177.59112 * 23 14 13 46 46 H 1.08999 * 109.46155 * 305.85017 * 24 11 8 47 47 H 1.08996 * 109.46579 * 65.82494 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 1 5.5231 5.0002 -0.8999 10 6 5.3745 5.2186 1.2382 11 7 7.3546 4.4910 -0.0063 12 6 7.8804 3.8280 1.1939 13 6 9.4032 3.7174 1.0915 14 6 10.0039 5.1192 0.9555 15 6 11.4985 5.0132 0.7940 16 1 11.9740 5.3971 -0.0965 17 6 12.2589 4.4262 1.7831 18 7 11.6798 3.9584 2.8673 19 14 14.1115 4.2955 1.5832 20 1 14.6916 5.6555 1.4443 21 1 14.6923 3.6286 2.7763 22 1 14.4235 3.4980 0.3701 23 6 9.4038 5.8061 -0.2744 24 6 7.8808 5.8562 -0.1323 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8909 34 1 3.4279 3.5611 -0.0047 35 1 5.7381 6.2461 1.2334 36 1 4.2845 5.2185 1.2372 37 1 5.7371 4.7094 2.1311 38 1 7.6171 4.4116 2.0760 39 1 7.4484 2.8305 1.2764 40 1 9.6669 3.1221 0.2172 41 1 9.7946 3.2393 1.9894 42 1 9.7734 5.7023 1.8471 43 1 12.2147 3.5452 3.5629 44 1 9.6674 5.2437 -1.1701 45 1 9.7956 6.8203 -0.3522 46 1 7.4494 6.3318 -1.0131 47 1 7.6176 6.4303 0.7560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397221781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:16 Heat of formation + Delta-G solvation = -53.512553 kcal Electronic energy + Delta-G solvation = -22955.364126 eV Core-core repulsion = 19751.209532 eV Total energy + Delta-G solvation = -3204.154594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08683 -37.90622 -36.25328 -34.33321 -33.80838 -31.90040 -29.78825 -29.54574 -28.51234 -25.72187 -24.57383 -23.09869 -22.04821 -21.62086 -21.27785 -19.78236 -18.26559 -16.71640 -16.35438 -16.14290 -16.13270 -15.11251 -14.71873 -14.43690 -14.17270 -14.01385 -13.78720 -13.66549 -13.33675 -12.79202 -12.67655 -12.52798 -12.15870 -12.00512 -11.91014 -11.61656 -11.49453 -11.47364 -11.44139 -11.12395 -10.96035 -10.84037 -10.65033 -10.46020 -10.03819 -9.84006 -9.53296 -9.22410 -9.03498 -8.86009 -8.47871 -8.17519 -7.62316 -5.87439 -3.92476 2.84259 3.12196 3.39275 3.43414 3.46466 4.46690 4.50192 4.53551 4.57868 4.67471 4.87240 5.03770 5.15420 5.18451 5.22642 5.31556 5.42624 5.42916 5.54954 5.59025 5.67248 5.69075 5.77941 5.83972 5.90419 5.96107 5.96773 6.07806 6.26238 6.37553 6.39078 6.52607 6.75147 6.88334 6.98141 7.16910 7.28876 7.45546 7.61131 7.72682 7.81921 7.94373 8.18042 8.29370 8.42870 8.59549 9.10884 9.71089 11.18723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003152 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.095799 B = 8881.525622 C = 9402.356186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.739 5.739 6 C 0.517 3.483 7 O -0.509 6.509 8 C 0.063 3.937 9 H 0.100 0.900 10 C -0.183 4.183 11 N -0.512 5.512 12 C 0.046 3.954 13 C -0.100 4.100 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.106 4.106 24 C 0.060 3.940 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.640 -1.745 -4.596 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.393 5.393 6 C 0.303 3.697 7 O -0.382 6.382 8 C -0.049 4.049 9 H 0.117 0.883 10 C -0.242 4.242 11 N -0.237 5.237 12 C -0.081 4.081 13 C -0.138 4.138 14 C 0.029 3.971 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.144 4.144 24 C -0.068 4.068 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -21.813 -2.800 -4.825 22.515 hybrid contribution 0.355 0.753 0.647 1.054 sum -21.458 -2.047 -4.178 21.957 Atomic orbital electron populations 1.21765 0.95601 1.01760 1.01814 1.21442 0.95980 0.96023 1.02644 1.21824 0.94401 0.97984 1.02640 1.21320 0.93341 0.83375 1.02431 1.46039 1.07260 1.08458 1.77572 1.20654 0.81667 0.91712 0.75698 1.90690 1.54615 1.46173 1.46756 1.21627 0.91952 0.92250 0.99100 0.88257 1.22419 1.00823 1.01832 0.99157 1.62019 1.02003 1.18046 1.41622 1.22567 0.99233 0.98395 0.87899 1.21600 0.89253 1.00313 1.02644 1.18701 0.94290 0.92282 0.91846 1.21177 0.91894 1.38050 1.03668 0.92869 1.24971 0.98227 0.95544 0.95316 1.69878 1.35126 1.40115 1.07993 0.86703 0.86016 0.78116 0.77392 1.20442 1.21427 1.20328 1.21676 0.91274 0.99909 1.01503 1.22171 0.97899 0.87963 0.98745 0.92712 0.92732 0.92626 0.91610 0.91591 0.91364 0.91367 0.91636 0.91623 0.76975 0.91157 0.92364 0.91492 0.96459 0.90023 0.93853 0.89174 0.96309 0.93130 0.92453 0.93179 0.92554 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.13 -0.87 5.33 -26.73 -0.14 -1.01 16 4 C 0.12 1.18 5.67 -4.04 -0.02 1.15 16 5 N -0.74 -7.88 5.45 -60.29 -0.33 -8.21 16 6 C 0.52 7.84 6.83 -10.98 -0.08 7.76 16 7 O -0.51 -10.14 13.91 5.56 0.08 -10.06 16 8 C 0.06 0.91 2.77 -68.87 -0.19 0.72 16 9 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 10 C -0.18 -2.24 8.40 37.16 0.31 -1.93 16 11 N -0.51 -9.71 4.44 -228.08 -1.01 -10.72 16 12 C 0.05 0.99 4.48 -3.84 -0.02 0.97 16 13 C -0.10 -2.56 5.12 -26.65 -0.14 -2.70 16 14 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 15 C -0.51 -14.53 8.56 -34.44 -0.29 -14.83 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 18 N -0.89 -26.37 11.37 55.43 0.63 -25.74 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 C -0.11 -2.30 5.32 -26.64 -0.14 -2.45 16 24 C 0.06 1.09 5.02 -3.83 -0.02 1.07 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 2.99 7.89 -40.82 -0.32 2.67 16 35 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 36 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.07 0.95 6.53 -51.93 -0.34 0.61 16 38 H 0.02 0.37 6.62 -51.93 -0.34 0.03 16 39 H 0.08 1.84 5.32 -51.92 -0.28 1.56 16 40 H 0.04 1.17 8.14 -51.92 -0.42 0.74 16 41 H 0.09 2.55 6.17 -51.93 -0.32 2.23 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 47 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.43 358.37 -9.63 -42.06 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.57 Total: 0.24 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.81 Total: -9.97 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.71 Total: -44.67 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.43 -9.63 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.454 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds