Wall clock time and date at job start Tue Mar 31 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 10 10 C 1.53000 * 109.47174 * 60.00061 * 8 6 5 11 11 N 1.46903 * 109.47066 * 180.02562 * 8 6 5 12 12 C 1.46845 * 111.00026 * 299.20822 * 11 8 6 13 13 C 1.53032 * 109.52588 * 174.15972 * 12 11 8 14 14 C 1.53119 * 109.27797 * 59.17930 * 13 12 11 15 15 C 1.50701 * 109.52346 * 182.44273 * 14 13 12 16 16 H 1.08002 * 119.99889 * 119.68542 * 15 14 13 17 17 C 1.37882 * 120.00050 * 299.68222 * 15 14 13 18 18 N 1.31515 * 119.99601 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99781 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47116 * 60.00424 * 19 17 15 21 21 H 1.48507 * 109.46810 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47494 * 299.99913 * 19 17 15 23 23 C 1.53124 * 109.16257 * 302.34700 * 14 13 12 24 24 C 1.46848 * 110.99762 * 175.00005 * 11 8 6 25 25 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 27 27 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 29 29 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 30 30 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 31 31 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 32 32 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 33 33 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 34 34 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 35 35 H 1.08998 * 109.47223 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47095 * 299.99934 * 10 8 6 37 37 H 1.09000 * 109.47156 * 60.00213 * 10 8 6 38 38 H 1.09000 * 109.46510 * 294.18030 * 12 11 8 39 39 H 1.09009 * 109.45921 * 54.14476 * 12 11 8 40 40 H 1.09008 * 109.50418 * 299.24020 * 13 12 11 41 41 H 1.08994 * 109.50733 * 179.12306 * 13 12 11 42 42 H 1.08999 * 109.52313 * 62.25095 * 14 13 12 43 43 H 0.96996 * 119.99606 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.50194 * 297.71564 * 23 14 13 45 45 H 1.09001 * 109.50144 * 177.59112 * 23 14 13 46 46 H 1.08999 * 109.46155 * 305.85017 * 24 11 8 47 47 H 1.08996 * 109.46579 * 65.82494 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 1 5.5231 5.0002 -0.8999 10 6 5.3745 5.2186 1.2382 11 7 7.3546 4.4910 -0.0063 12 6 7.8804 3.8280 1.1939 13 6 9.4032 3.7174 1.0915 14 6 10.0039 5.1192 0.9555 15 6 11.4985 5.0132 0.7940 16 1 11.9740 5.3971 -0.0965 17 6 12.2589 4.4262 1.7831 18 7 11.6798 3.9584 2.8673 19 14 14.1115 4.2955 1.5832 20 1 14.6916 5.6555 1.4443 21 1 14.6923 3.6286 2.7763 22 1 14.4235 3.4980 0.3701 23 6 9.4038 5.8061 -0.2744 24 6 7.8808 5.8562 -0.1323 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8909 34 1 3.4279 3.5611 -0.0047 35 1 5.7381 6.2461 1.2334 36 1 4.2845 5.2185 1.2372 37 1 5.7371 4.7094 2.1311 38 1 7.6171 4.4116 2.0760 39 1 7.4484 2.8305 1.2764 40 1 9.6669 3.1221 0.2172 41 1 9.7946 3.2393 1.9894 42 1 9.7734 5.7023 1.8471 43 1 12.2147 3.5452 3.5629 44 1 9.6674 5.2437 -1.1701 45 1 9.7956 6.8203 -0.3522 46 1 7.4494 6.3318 -1.0131 47 1 7.6176 6.4303 0.7560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397221781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:15 Heat of formation + Delta-G solvation = -75.586283 kcal Electronic energy + Delta-G solvation = -22956.321314 eV Core-core repulsion = 19751.209532 eV Total energy + Delta-G solvation = -3205.111782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34500 -39.36631 -37.11338 -36.05568 -34.73690 -33.72093 -31.43918 -30.97937 -29.45470 -27.47272 -25.77350 -24.21643 -23.80700 -22.82006 -22.24678 -20.96878 -20.02892 -18.43539 -17.83057 -17.43578 -16.89649 -16.62035 -16.14559 -15.78995 -15.46156 -15.33717 -14.87822 -14.72705 -14.49047 -14.29487 -14.24678 -13.82169 -13.38034 -13.27543 -13.05640 -12.95988 -12.84710 -12.66794 -12.50842 -12.38989 -12.33027 -12.06324 -11.97114 -11.95246 -11.67593 -11.49593 -11.33959 -10.91228 -10.79052 -10.44311 -10.29917 -10.00900 -9.08825 -8.07169 -6.20826 1.39536 1.42411 1.49487 1.68129 2.12956 2.43759 3.09761 3.19402 3.78931 3.89830 4.02034 4.05910 4.11917 4.20616 4.31165 4.34515 4.44502 4.46375 4.60625 4.65639 4.65795 4.72279 4.73135 4.90268 4.93513 4.94414 4.96119 5.03136 5.07274 5.14050 5.23920 5.25590 5.27595 5.35366 5.37232 5.46432 5.52153 5.61164 5.64335 5.99821 6.02660 6.24692 6.34434 6.41752 6.65626 6.91339 7.35579 7.46500 8.97357 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003152 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.095799 B = 8881.525622 C = 9402.356186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.118 3.882 5 N -0.716 5.716 6 C 0.513 3.487 7 O -0.567 6.567 8 C 0.063 3.937 9 H 0.136 0.864 10 C -0.176 4.176 11 N -0.530 5.530 12 C 0.066 3.934 13 C -0.091 4.091 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.052 0.948 17 C 0.008 3.992 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.101 4.101 24 C 0.066 3.934 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.016 0.984 39 H 0.071 0.929 40 H 0.017 0.983 41 H 0.054 0.946 42 H -0.009 1.009 43 H 0.259 0.741 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.885 -0.240 -5.692 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.006 4.006 5 N -0.370 5.370 6 C 0.299 3.701 7 O -0.445 6.445 8 C -0.049 4.049 9 H 0.153 0.847 10 C -0.235 4.235 11 N -0.255 5.255 12 C -0.061 4.061 13 C -0.129 4.129 14 C 0.027 3.973 15 C -0.572 4.572 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.559 5.559 19 Si 0.780 3.220 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.009 0.991 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.125 -1.259 -5.932 24.875 hybrid contribution 0.994 0.253 0.975 1.415 sum -23.131 -1.006 -4.957 23.677 Atomic orbital electron populations 1.21745 0.94574 1.02091 1.02299 1.21458 0.96822 0.95810 1.02236 1.21750 0.91475 0.98438 1.03896 1.21383 0.95640 0.82573 1.00996 1.45849 1.06152 1.09619 1.75396 1.20915 0.82609 0.91522 0.75025 1.90677 1.56358 1.47702 1.49801 1.21805 0.88857 0.92439 1.01805 0.84664 1.22368 1.03406 1.01179 0.96535 1.61838 1.05357 1.18425 1.39857 1.22137 0.96113 0.98444 0.89423 1.21363 0.92488 0.99527 0.99545 1.18660 0.93654 0.92276 0.92741 1.21594 0.93609 1.38256 1.03739 0.92975 1.25806 1.03003 0.95168 0.95028 1.70034 1.36713 1.40547 1.08634 0.85661 0.80364 0.78532 0.77395 1.19240 1.20957 1.19947 1.21556 0.94241 0.99570 0.98529 1.22120 0.95175 0.87879 1.00889 0.92294 0.92131 0.92471 0.91982 0.92223 0.90182 0.89886 0.92974 0.93375 0.74625 0.90549 0.88264 0.94071 0.96625 0.91101 0.96411 0.92720 0.99083 0.93180 0.93596 0.92132 0.88514 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.13 -1.41 5.93 30.60 0.18 -1.23 16 3 C -0.12 -1.28 5.33 30.60 0.16 -1.12 16 4 C 0.12 2.20 5.67 86.38 0.49 2.69 16 5 N -0.72 -13.62 5.45 -463.05 -2.52 -16.15 16 6 C 0.51 14.90 6.83 87.65 0.60 15.50 16 7 O -0.57 -23.06 13.91 -3.04 -0.04 -23.10 16 8 C 0.06 1.64 2.77 44.17 0.12 1.76 16 9 H 0.14 2.63 8.08 -2.39 -0.02 2.61 16 10 C -0.18 -3.74 8.40 71.98 0.60 -3.14 16 11 N -0.53 -19.55 4.44 -875.51 -3.88 -23.43 16 12 C 0.07 2.96 4.48 86.32 0.39 3.35 16 13 C -0.09 -4.90 5.12 30.64 0.16 -4.74 16 14 C 0.05 2.43 2.16 -11.46 -0.02 2.40 16 15 C -0.53 -31.29 8.56 25.60 0.22 -31.07 16 16 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 17 C 0.01 0.47 5.31 84.66 0.45 0.92 16 18 N -0.92 -56.33 11.37 21.45 0.24 -56.08 16 19 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 23 C -0.10 -4.37 5.32 30.65 0.16 -4.21 16 24 C 0.07 2.28 5.02 86.33 0.43 2.71 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.42 4.60 7.89 -92.71 -0.73 3.86 16 35 H 0.08 1.57 6.65 -2.39 -0.02 1.56 16 36 H 0.10 1.28 7.56 -2.39 -0.02 1.27 16 37 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 38 H 0.02 0.69 6.62 -2.39 -0.02 0.68 16 39 H 0.07 3.34 5.32 -2.38 -0.01 3.33 16 40 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.05 3.29 6.17 -2.39 -0.01 3.28 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.10 2.59 8.08 -2.39 -0.02 2.57 16 47 H 0.03 1.15 6.73 -2.39 -0.02 1.13 16 Total: -1.00 -74.77 358.37 0.68 -74.09 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.20 Total: 13.50 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 4.66 Total: -16.79 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -6.16 Total: -95.66 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.77 0.68 -74.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.495 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds