Wall clock time and date at job start Tue Mar 31 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 C 1.52998 * 109.46469 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46941 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00445 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99626 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00369 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.46795 * 31.84732 * 8 6 5 10 10 C 1.52999 * 109.47080 * 271.84704 * 8 6 5 11 11 N 1.46899 * 109.46992 * 151.84226 * 8 6 5 12 12 C 1.46844 * 111.00305 * 306.50330 * 11 8 6 13 13 C 1.53035 * 109.52398 * 185.83845 * 12 11 8 14 14 C 1.53119 * 109.27806 * 300.81944 * 13 12 11 15 15 C 1.50699 * 109.52249 * 177.55620 * 14 13 12 16 16 H 1.08004 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00023 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99841 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99847 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47200 * 89.99654 * 19 17 15 21 21 H 1.48506 * 109.47110 * 209.99255 * 19 17 15 22 22 H 1.48497 * 109.47286 * 329.99479 * 19 17 15 23 23 C 1.53121 * 109.16192 * 57.65470 * 14 13 12 24 24 C 1.46851 * 110.99609 * 70.71088 * 11 8 6 25 25 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47290 * 300.00153 * 1 2 3 27 27 H 1.08998 * 109.47264 * 60.00224 * 1 2 3 28 28 H 1.09001 * 109.46958 * 240.00278 * 2 1 3 29 29 H 1.08999 * 109.46833 * 120.00086 * 2 1 3 30 30 H 1.09001 * 109.47175 * 60.00411 * 3 2 1 31 31 H 1.08998 * 109.47067 * 299.99897 * 3 2 1 32 32 H 1.09001 * 109.47062 * 60.00372 * 4 3 2 33 33 H 1.08998 * 109.47417 * 299.99713 * 4 3 2 34 34 H 0.97004 * 120.00333 * 0.02562 * 5 4 3 35 35 H 1.08998 * 109.47416 * 60.00126 * 10 8 6 36 36 H 1.09000 * 109.46764 * 179.97438 * 10 8 6 37 37 H 1.08994 * 109.47113 * 299.99563 * 10 8 6 38 38 H 1.08995 * 109.46457 * 65.81956 * 12 11 8 39 39 H 1.09007 * 109.45033 * 305.84555 * 12 11 8 40 40 H 1.09003 * 109.50317 * 180.87472 * 13 12 11 41 41 H 1.09009 * 109.50186 * 60.76009 * 13 12 11 42 42 H 1.08992 * 109.52145 * 297.74953 * 14 13 12 43 43 H 0.97001 * 120.00027 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.50505 * 62.28056 * 23 14 13 45 45 H 1.08989 * 109.50593 * 182.40546 * 23 14 13 46 46 H 1.09000 * 109.46263 * 294.17497 * 24 11 8 47 47 H 1.09004 * 109.46222 * 54.14195 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0701 0.0010 7 8 6.1715 2.1483 0.0018 8 6 5.8857 4.4909 -0.0003 9 1 5.1833 5.1250 0.5406 10 6 6.0132 4.9855 -1.4425 11 7 7.1996 4.5463 0.6545 12 6 7.1487 3.9360 1.9891 13 6 8.4902 4.1405 2.6965 14 6 9.6038 3.4993 1.8638 15 6 10.9347 3.7493 2.5250 16 1 10.9828 4.3092 3.4473 17 6 12.0909 3.2625 1.9530 18 7 13.2523 3.4803 2.5303 19 14 12.0076 2.2936 0.3581 20 1 12.1250 3.2242 -0.7932 21 1 13.1212 1.3120 0.3165 22 1 10.7107 1.5743 0.2829 23 6 9.6039 4.1183 0.4633 24 6 8.2301 3.9143 -0.1794 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9336 0.9286 -0.8892 33 1 3.9329 0.9289 0.8908 34 1 3.4280 3.5610 -0.0003 35 1 5.0384 4.9444 -1.9282 36 1 6.3761 6.0133 -1.4433 37 1 6.7157 4.3514 -1.9833 38 1 6.9476 2.8690 1.8932 39 1 6.3555 4.4040 2.5723 40 1 8.4573 3.6739 3.6811 41 1 8.6854 5.2074 2.8052 42 1 9.4297 2.4261 1.7877 43 1 14.0657 3.1381 2.1277 44 1 9.8166 5.1848 0.5367 45 1 10.3667 3.6358 -0.1478 46 1 8.0240 2.8475 -0.2652 47 1 8.2223 4.3665 -1.1712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397221789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:19 Heat of formation + Delta-G solvation = -72.942218 kcal Electronic energy + Delta-G solvation = -23306.990819 eV Core-core repulsion = 20101.993692 eV Total energy + Delta-G solvation = -3204.997127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61981 -39.28944 -37.17511 -36.00055 -34.76011 -34.03879 -31.99173 -31.21464 -29.67787 -27.61567 -25.60771 -24.06335 -23.91296 -22.69755 -22.28653 -21.02119 -20.50186 -18.85358 -18.08980 -17.67873 -16.91766 -16.74123 -16.02105 -15.91767 -15.64658 -15.47051 -15.15420 -14.84440 -14.50512 -14.46468 -14.24241 -13.89007 -13.61125 -13.39339 -13.28794 -13.11747 -12.73906 -12.71163 -12.49640 -12.28555 -12.12476 -12.10233 -12.01687 -11.94645 -11.67780 -11.52913 -11.39981 -11.20811 -10.98068 -10.80586 -10.60620 -10.11018 -9.10580 -8.32140 -6.33697 1.24566 1.31179 1.42783 1.58315 2.20400 2.29805 2.89716 3.03211 3.79796 3.86634 3.91639 3.99217 4.05650 4.16706 4.23400 4.23659 4.38433 4.41321 4.46529 4.61973 4.62264 4.65837 4.68800 4.77204 4.86137 4.89701 4.91733 4.92431 4.94537 5.01024 5.07587 5.16500 5.23951 5.28703 5.29054 5.33677 5.43480 5.49452 5.50215 5.65974 5.77128 6.06098 6.11299 6.31439 6.56783 6.72489 7.27512 7.31392 8.84876 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.003712 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.805022 B = 7540.728843 C = 7801.732033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.117 4.117 4 C 0.116 3.884 5 N -0.715 5.715 6 C 0.480 3.520 7 O -0.580 6.580 8 C 0.063 3.937 9 H 0.136 0.864 10 C -0.140 4.140 11 N -0.506 5.506 12 C 0.056 3.944 13 C -0.089 4.089 14 C 0.013 3.987 15 C -0.514 4.514 16 H 0.037 0.963 17 C 0.015 3.985 18 N -0.948 5.948 19 Si 0.947 3.053 20 H -0.261 1.261 21 H -0.296 1.296 22 H -0.265 1.265 23 C -0.111 4.111 24 C 0.046 3.954 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.417 0.583 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.040 0.960 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.385 0.102 -9.643 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.266 3.734 7 O -0.460 6.460 8 C -0.049 4.049 9 H 0.154 0.846 10 C -0.197 4.197 11 N -0.230 5.230 12 C -0.072 4.072 13 C -0.127 4.127 14 C -0.006 4.006 15 C -0.552 4.552 16 H 0.055 0.945 17 C -0.182 4.182 18 N -0.589 5.589 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.223 1.223 22 H -0.190 1.190 23 C -0.149 4.149 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.255 0.745 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.525 -0.080 -9.587 30.093 hybrid contribution 0.520 -1.338 -0.319 1.471 sum -28.005 -1.418 -9.905 29.739 Atomic orbital electron populations 1.21745 0.94520 1.02099 1.02343 1.21462 0.96884 0.95886 1.02128 1.21746 0.91497 0.98358 1.03918 1.21364 0.95691 0.82995 1.00741 1.46101 1.06709 1.09477 1.74539 1.22561 0.82759 0.93285 0.74795 1.90698 1.56178 1.48190 1.50893 1.22210 0.92039 0.91168 0.99500 0.84618 1.21878 1.03568 1.02697 0.91599 1.62439 1.03625 1.54344 1.02573 1.22174 0.98130 0.97026 0.89837 1.21352 0.93293 1.00507 0.97541 1.19108 0.93917 0.94341 0.93227 1.21400 0.91408 1.33745 1.08623 0.94460 1.25791 0.95001 0.96777 1.00660 1.70035 0.98733 1.48295 1.41845 0.85871 0.77121 0.78829 0.80736 1.18685 1.22341 1.18955 1.21844 0.95153 1.00880 0.97032 1.22336 0.90972 0.98193 0.96669 0.92507 0.92261 0.92070 0.92069 0.92355 0.90185 0.89816 0.93152 0.93663 0.74508 0.88927 0.89400 0.93493 0.95695 0.88934 0.92942 0.92174 0.98039 0.92559 0.92035 0.94937 0.94133 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.13 -1.36 5.93 30.60 0.18 -1.17 16 3 C -0.12 -1.18 5.33 30.60 0.16 -1.02 16 4 C 0.12 2.04 5.67 86.38 0.49 2.53 16 5 N -0.71 -12.14 5.56 -463.07 -2.57 -14.71 16 6 C 0.48 12.35 6.02 87.66 0.53 12.88 16 7 O -0.58 -21.52 12.45 -3.01 -0.04 -21.56 16 8 C 0.06 1.40 2.95 44.17 0.13 1.53 16 9 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 10 C -0.14 -2.52 8.57 71.98 0.62 -1.90 16 11 N -0.51 -16.26 4.73 -875.50 -4.14 -20.40 16 12 C 0.06 1.96 4.89 86.33 0.42 2.38 16 13 C -0.09 -3.82 5.32 30.65 0.16 -3.66 16 14 C 0.01 0.67 1.75 -11.46 -0.02 0.65 16 15 C -0.51 -31.27 9.14 25.60 0.23 -31.03 16 16 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 17 C 0.01 0.90 5.45 84.66 0.46 1.36 16 18 N -0.95 -61.93 13.96 21.45 0.30 -61.63 16 19 Si 0.95 49.18 24.37 68.60 1.67 50.85 16 20 H -0.26 -12.72 6.89 99.48 0.69 -12.03 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 22 H -0.26 -13.65 6.53 99.48 0.65 -13.00 16 23 C -0.11 -5.15 4.84 30.65 0.15 -5.00 16 24 C 0.05 1.75 4.62 86.33 0.40 2.15 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.42 3.78 8.47 -92.71 -0.79 2.99 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.05 6.19 -2.39 -0.01 1.04 16 38 H 0.02 0.99 6.09 -2.39 -0.01 0.97 16 39 H 0.09 2.59 8.12 -2.38 -0.02 2.57 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.57 8.14 -2.38 -0.02 2.56 16 42 H 0.00 0.08 7.19 -2.39 -0.02 0.06 16 43 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.03 1.58 3.38 -2.39 -0.01 1.57 16 46 H 0.04 1.77 5.67 -2.39 -0.01 1.75 16 47 H 0.09 2.88 5.82 -2.38 -0.01 2.87 16 Total: -1.00 -77.84 351.35 -0.08 -77.92 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.07 Total: 10.39 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.63 Total: -20.86 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -6.41 Total: -96.74 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.04 Total: -21.56 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.67 Total: 50.85 kcal Total: -77.84 -0.08 -77.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.981 kcal (2) G-P(sol) polarization free energy of solvation -77.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds