Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 C 1.52999 * 109.46793 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46627 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99925 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99840 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00334 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46799 * 328.61959 * 8 6 5 10 10 C 1.53002 * 109.47116 * 88.61793 * 8 6 5 11 11 N 1.46898 * 109.47330 * 208.62011 * 8 6 5 12 12 C 1.46844 * 110.99754 * 52.29087 * 11 8 6 13 13 C 1.53043 * 109.51864 * 174.16260 * 12 11 8 14 14 C 1.53120 * 109.31035 * 59.16173 * 13 12 11 15 15 C 1.53120 * 109.15627 * 302.40210 * 14 13 12 16 16 H 1.09003 * 109.50225 * 297.63118 * 15 14 13 17 17 C 1.50702 * 109.50212 * 177.55986 * 15 14 13 18 18 H 1.07996 * 120.00041 * 240.27521 * 17 15 14 19 19 C 1.37878 * 120.00432 * 60.27784 * 17 15 14 20 20 N 1.31521 * 119.99441 * 8.29467 * 19 17 15 21 21 Si 1.86799 * 120.00312 * 188.29717 * 19 17 15 22 22 H 1.48501 * 109.46818 * 84.98170 * 21 19 17 23 23 H 1.48501 * 109.46944 * 204.97995 * 21 19 17 24 24 H 1.48497 * 109.46885 * 324.98341 * 21 19 17 25 25 C 1.46849 * 110.99665 * 288.08235 * 11 8 6 26 26 H 1.09000 * 109.47261 * 300.00724 * 1 2 3 27 27 H 1.08997 * 109.46865 * 60.00328 * 1 2 3 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47090 * 240.00043 * 2 1 3 30 30 H 1.08997 * 109.46865 * 119.99672 * 2 1 3 31 31 H 1.09001 * 109.47145 * 59.99510 * 3 2 1 32 32 H 1.09005 * 109.46895 * 299.99901 * 3 2 1 33 33 H 1.09000 * 109.47109 * 60.00206 * 4 3 2 34 34 H 1.08997 * 109.47130 * 299.99661 * 4 3 2 35 35 H 0.96996 * 120.00678 * 0.02562 * 5 4 3 36 36 H 1.09001 * 109.47164 * 180.02562 * 10 8 6 37 37 H 1.09003 * 109.46956 * 299.99822 * 10 8 6 38 38 H 1.09002 * 109.47136 * 59.99847 * 10 8 6 39 39 H 1.08998 * 109.46348 * 54.14843 * 12 11 8 40 40 H 1.08999 * 109.45852 * 294.16746 * 12 11 8 41 41 H 1.09004 * 109.50122 * 179.11985 * 13 12 11 42 42 H 1.08994 * 109.50420 * 299.19833 * 13 12 11 43 43 H 1.08995 * 109.52615 * 62.26990 * 14 13 12 44 44 H 1.08999 * 109.51928 * 182.45874 * 14 13 12 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46199 * 305.85452 * 25 11 8 47 47 H 1.09004 * 109.46522 * 65.82653 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1715 2.1482 0.0018 8 6 5.8858 4.4908 0.0009 9 1 5.1801 5.1256 -0.5350 10 6 6.0219 4.9837 1.4430 11 7 7.1957 4.5470 -0.6615 12 6 7.1438 3.9129 -1.9849 13 6 8.4798 4.1175 -2.7028 14 6 9.6042 3.5022 -1.8651 15 6 9.6049 4.1450 -0.4754 16 1 9.8075 5.2121 -0.5681 17 6 10.6701 3.5028 0.3755 18 1 10.3984 2.9967 1.2900 19 6 11.9916 3.5614 -0.0135 20 7 12.3438 4.3122 -1.0343 21 14 13.2816 2.5745 0.9092 22 1 13.3304 1.1934 0.3657 23 1 14.6093 3.2187 0.7440 24 1 12.9303 2.5269 2.3512 25 6 8.2364 3.9396 0.1779 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 3.4281 3.5610 -0.0003 36 1 6.3849 6.0115 1.4429 37 1 5.0499 4.9420 1.9344 38 1 6.7275 4.3488 1.9789 39 1 6.3433 4.3629 -2.5721 40 1 6.9536 2.8459 -1.8691 41 1 8.4464 3.6333 -3.6788 42 1 8.6640 5.1840 -2.8318 43 1 9.4414 2.4287 -1.7692 44 1 10.5624 3.6842 -2.3518 45 1 13.2735 4.3532 -1.3082 46 1 8.2294 4.4091 1.1617 47 1 8.0409 2.8725 0.2835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397686743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -55.482209 kcal Electronic energy + Delta-G solvation = -23282.291074 eV Core-core repulsion = 20078.051070 eV Total energy + Delta-G solvation = -3204.240004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23635 -37.67017 -36.17921 -34.08211 -33.77262 -32.31168 -29.83220 -29.59693 -28.61850 -25.20874 -24.47357 -23.48820 -21.68689 -21.61475 -21.16137 -19.76144 -18.65573 -16.77330 -16.49523 -16.13746 -15.85909 -15.04818 -14.84012 -14.40322 -14.09336 -14.04648 -13.78409 -13.59443 -12.96212 -12.71980 -12.63652 -12.37174 -12.30083 -11.98771 -11.89663 -11.76407 -11.47402 -11.42630 -11.24670 -11.03006 -10.98069 -10.79111 -10.58943 -10.44481 -10.01697 -9.91829 -9.69383 -9.32277 -9.02053 -8.86999 -8.58925 -8.17781 -7.43697 -5.89009 -3.90175 2.81626 3.22796 3.39125 3.44780 3.48120 4.41411 4.51056 4.58082 4.58434 4.69384 4.97179 5.04134 5.21880 5.22648 5.32206 5.35214 5.42510 5.43337 5.56159 5.66592 5.67906 5.77059 5.81505 5.90703 5.92402 5.96175 6.07616 6.19300 6.31469 6.38016 6.46502 6.65033 6.69444 6.84057 6.96455 7.18942 7.33447 7.41751 7.54601 7.72175 7.84774 7.89510 8.18965 8.25072 8.41991 8.62277 9.13299 9.72011 11.19422 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.003582 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.862567 B = 7815.267280 C = 8109.957018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.738 5.738 6 C 0.482 3.518 7 O -0.523 6.523 8 C 0.066 3.934 9 H 0.092 0.908 10 C -0.143 4.143 11 N -0.509 5.509 12 C 0.051 3.949 13 C -0.113 4.113 14 C -0.107 4.107 15 C 0.056 3.944 16 H 0.032 0.968 17 C -0.510 4.510 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.886 3.114 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.048 3.952 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.258 0.742 46 H 0.060 0.940 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.576 -2.159 0.840 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.392 5.392 6 C 0.268 3.732 7 O -0.397 6.397 8 C -0.047 4.047 9 H 0.110 0.890 10 C -0.201 4.201 11 N -0.232 5.232 12 C -0.077 4.077 13 C -0.151 4.151 14 C -0.145 4.145 15 C 0.037 3.963 16 H 0.051 0.949 17 C -0.549 4.549 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.714 3.286 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.676 -2.286 0.668 21.806 hybrid contribution 0.128 -1.116 0.475 1.220 sum -21.548 -3.402 1.143 21.845 Atomic orbital electron populations 1.21764 0.95580 1.01753 1.01821 1.21445 0.95995 0.96059 1.02601 1.21821 0.94415 0.97946 1.02614 1.21321 0.93365 0.83821 1.02260 1.46328 1.07651 1.08309 1.76907 1.22495 0.81834 0.93590 0.75319 1.90716 1.54525 1.46666 1.47831 1.21944 0.94070 0.90802 0.97915 0.89025 1.21864 1.01851 1.03070 0.93273 1.62581 1.01800 1.55538 1.03319 1.22180 0.98323 0.97423 0.89766 1.21620 0.94989 1.01153 0.97368 1.21579 0.97289 0.97554 0.98078 1.18639 0.88981 0.97026 0.91630 0.94947 1.21130 0.91400 1.34777 1.07553 0.92907 1.24921 0.98287 0.95221 0.95367 1.69962 1.17147 1.38142 1.27506 0.86704 0.81001 0.80551 0.80301 1.20729 1.21423 1.20056 1.22652 0.91820 0.98085 0.95297 0.92719 0.92707 0.92630 0.91642 0.91648 0.91377 0.91377 0.91809 0.91772 0.76982 0.90418 0.92577 0.91055 0.93082 0.93897 0.93660 0.92210 0.94906 0.90218 0.93200 0.92149 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.13 -0.93 5.33 -26.73 -0.14 -1.07 16 4 C 0.12 1.22 5.67 -4.04 -0.02 1.20 16 5 N -0.74 -8.26 5.56 -60.29 -0.33 -8.59 16 6 C 0.48 7.50 6.01 -10.98 -0.07 7.43 16 7 O -0.52 -10.61 12.47 5.56 0.07 -10.54 16 8 C 0.07 0.98 2.97 -68.86 -0.20 0.78 16 9 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 10 C -0.14 -1.92 8.52 37.16 0.32 -1.60 16 11 N -0.51 -9.80 4.74 -228.08 -1.08 -10.88 16 12 C 0.05 0.97 4.87 -3.83 -0.02 0.96 16 13 C -0.11 -2.37 6.09 -26.65 -0.16 -2.53 16 14 C -0.11 -2.70 5.03 -26.61 -0.13 -2.83 16 15 C 0.06 1.48 2.20 -91.69 -0.20 1.28 16 16 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.51 -14.70 8.55 -34.44 -0.29 -14.99 16 18 H 0.05 1.52 7.76 -52.49 -0.41 1.11 16 19 C 0.06 1.82 5.21 -17.82 -0.09 1.72 16 20 N -0.89 -26.33 11.75 55.43 0.65 -25.68 16 21 Si 0.89 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 C 0.05 1.09 3.82 -3.83 -0.01 1.07 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.17 8.47 -40.82 -0.35 2.82 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.12 6.19 -51.93 -0.32 0.80 16 39 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.04 0.90 6.02 -51.93 -0.31 0.59 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 2.20 6.51 -51.93 -0.34 1.86 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 46 H 0.06 1.34 5.81 -51.93 -0.30 1.04 16 47 H 0.06 1.37 5.75 -51.93 -0.30 1.08 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -32.43 358.73 -9.79 -42.22 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.65 Total: 1.05 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.83 Total: -10.09 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.76 Total: -45.15 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.43 -9.79 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397686743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.265 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds