Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 C 1.52999 * 109.46793 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46627 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99925 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99840 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00334 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46799 * 328.61959 * 8 6 5 10 10 C 1.53002 * 109.47116 * 88.61793 * 8 6 5 11 11 N 1.46898 * 109.47330 * 208.62011 * 8 6 5 12 12 C 1.46844 * 110.99754 * 52.29087 * 11 8 6 13 13 C 1.53043 * 109.51864 * 174.16260 * 12 11 8 14 14 C 1.53120 * 109.31035 * 59.16173 * 13 12 11 15 15 C 1.53120 * 109.15627 * 302.40210 * 14 13 12 16 16 H 1.09003 * 109.50225 * 297.63118 * 15 14 13 17 17 C 1.50702 * 109.50212 * 177.55986 * 15 14 13 18 18 H 1.07996 * 120.00041 * 240.27521 * 17 15 14 19 19 C 1.37878 * 120.00432 * 60.27784 * 17 15 14 20 20 N 1.31521 * 119.99441 * 8.29467 * 19 17 15 21 21 Si 1.86799 * 120.00312 * 188.29717 * 19 17 15 22 22 H 1.48501 * 109.46818 * 84.98170 * 21 19 17 23 23 H 1.48501 * 109.46944 * 204.97995 * 21 19 17 24 24 H 1.48497 * 109.46885 * 324.98341 * 21 19 17 25 25 C 1.46849 * 110.99665 * 288.08235 * 11 8 6 26 26 H 1.09000 * 109.47261 * 300.00724 * 1 2 3 27 27 H 1.08997 * 109.46865 * 60.00328 * 1 2 3 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47090 * 240.00043 * 2 1 3 30 30 H 1.08997 * 109.46865 * 119.99672 * 2 1 3 31 31 H 1.09001 * 109.47145 * 59.99510 * 3 2 1 32 32 H 1.09005 * 109.46895 * 299.99901 * 3 2 1 33 33 H 1.09000 * 109.47109 * 60.00206 * 4 3 2 34 34 H 1.08997 * 109.47130 * 299.99661 * 4 3 2 35 35 H 0.96996 * 120.00678 * 0.02562 * 5 4 3 36 36 H 1.09001 * 109.47164 * 180.02562 * 10 8 6 37 37 H 1.09003 * 109.46956 * 299.99822 * 10 8 6 38 38 H 1.09002 * 109.47136 * 59.99847 * 10 8 6 39 39 H 1.08998 * 109.46348 * 54.14843 * 12 11 8 40 40 H 1.08999 * 109.45852 * 294.16746 * 12 11 8 41 41 H 1.09004 * 109.50122 * 179.11985 * 13 12 11 42 42 H 1.08994 * 109.50420 * 299.19833 * 13 12 11 43 43 H 1.08995 * 109.52615 * 62.26990 * 14 13 12 44 44 H 1.08999 * 109.51928 * 182.45874 * 14 13 12 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46199 * 305.85452 * 25 11 8 47 47 H 1.09004 * 109.46522 * 65.82653 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1715 2.1482 0.0018 8 6 5.8858 4.4908 0.0009 9 1 5.1801 5.1256 -0.5350 10 6 6.0219 4.9837 1.4430 11 7 7.1957 4.5470 -0.6615 12 6 7.1438 3.9129 -1.9849 13 6 8.4798 4.1175 -2.7028 14 6 9.6042 3.5022 -1.8651 15 6 9.6049 4.1450 -0.4754 16 1 9.8075 5.2121 -0.5681 17 6 10.6701 3.5028 0.3755 18 1 10.3984 2.9967 1.2900 19 6 11.9916 3.5614 -0.0135 20 7 12.3438 4.3122 -1.0343 21 14 13.2816 2.5745 0.9092 22 1 13.3304 1.1934 0.3657 23 1 14.6093 3.2187 0.7440 24 1 12.9303 2.5269 2.3512 25 6 8.2364 3.9396 0.1779 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 3.4281 3.5610 -0.0003 36 1 6.3849 6.0115 1.4429 37 1 5.0499 4.9420 1.9344 38 1 6.7275 4.3488 1.9789 39 1 6.3433 4.3629 -2.5721 40 1 6.9536 2.8459 -1.8691 41 1 8.4464 3.6333 -3.6788 42 1 8.6640 5.1840 -2.8318 43 1 9.4414 2.4287 -1.7692 44 1 10.5624 3.6842 -2.3518 45 1 13.2735 4.3532 -1.3082 46 1 8.2294 4.4091 1.1617 47 1 8.0409 2.8725 0.2835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397686743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -77.842252 kcal Electronic energy + Delta-G solvation = -23283.260678 eV Core-core repulsion = 20078.051070 eV Total energy + Delta-G solvation = -3205.209608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55190 -39.13936 -37.11856 -35.78257 -34.74277 -34.10455 -31.76558 -30.84720 -29.60307 -27.06035 -25.90243 -24.65672 -23.13499 -22.81244 -22.27672 -21.02165 -20.38794 -18.49130 -17.95541 -17.39919 -16.88335 -16.64704 -16.11791 -15.83146 -15.65732 -15.29227 -14.86737 -14.50367 -14.48657 -14.30013 -14.10999 -13.76533 -13.73132 -13.27802 -13.13298 -12.89663 -12.84229 -12.57000 -12.50350 -12.41772 -12.18017 -12.04839 -11.96773 -11.85800 -11.68321 -11.51702 -11.36022 -11.17663 -10.81904 -10.62602 -10.39064 -10.08569 -8.99793 -8.11309 -6.20485 1.37766 1.39841 1.49036 1.61244 2.22509 2.42117 3.03355 3.17184 3.83730 3.88456 3.98019 4.02020 4.15489 4.18130 4.26203 4.30350 4.42390 4.45409 4.62960 4.66798 4.69368 4.74089 4.82669 4.89869 4.91125 4.93405 4.93699 5.03753 5.05673 5.12771 5.20060 5.25931 5.29711 5.34667 5.40260 5.44719 5.46863 5.52327 5.63762 5.94243 6.08259 6.15442 6.22370 6.47013 6.60327 6.90448 7.30896 7.45238 8.96332 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.003582 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.862567 B = 7815.267280 C = 8109.957018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.117 4.117 4 C 0.116 3.884 5 N -0.715 5.715 6 C 0.481 3.519 7 O -0.578 6.578 8 C 0.063 3.937 9 H 0.136 0.864 10 C -0.140 4.140 11 N -0.515 5.515 12 C 0.057 3.943 13 C -0.107 4.107 14 C -0.100 4.100 15 C 0.055 3.945 16 H 0.000 1.000 17 C -0.536 4.536 18 H 0.044 0.956 19 C 0.016 3.984 20 N -0.914 5.914 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.069 3.931 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.417 0.583 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.049 0.951 45 H 0.261 0.739 46 H 0.060 0.940 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.236 -1.510 0.944 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.008 4.008 5 N -0.369 5.369 6 C 0.267 3.733 7 O -0.457 6.457 8 C -0.049 4.049 9 H 0.153 0.847 10 C -0.197 4.197 11 N -0.238 5.238 12 C -0.071 4.071 13 C -0.145 4.145 14 C -0.138 4.138 15 C 0.036 3.964 16 H 0.019 0.981 17 C -0.574 4.574 18 H 0.062 0.938 19 C -0.183 4.183 20 N -0.553 5.553 21 Si 0.776 3.224 22 H -0.204 1.204 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.058 4.058 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -24.406 -1.610 0.775 24.471 hybrid contribution 0.887 -1.318 0.448 1.651 sum -23.518 -2.928 1.223 23.731 Atomic orbital electron populations 1.21742 0.94463 1.02118 1.02343 1.21461 0.96915 0.95812 1.02145 1.21747 0.91393 0.98429 1.03916 1.21367 0.95739 0.82953 1.00702 1.46098 1.06586 1.09488 1.74732 1.22514 0.82766 0.93182 0.74829 1.90712 1.56247 1.48114 1.50622 1.22185 0.92449 0.91303 0.99011 0.84690 1.21858 1.03215 1.02387 0.92247 1.62491 1.03337 1.54765 1.03206 1.22127 0.98133 0.96785 0.90005 1.21541 0.94413 1.00738 0.97818 1.21391 0.97751 0.96472 0.98172 1.18566 0.90807 0.94646 0.92413 0.98142 1.21465 0.92800 1.35322 1.07860 0.93803 1.25690 1.00274 0.96003 0.96315 1.70077 1.17678 1.38963 1.28620 0.85697 0.78526 0.78975 0.79247 1.20382 1.20369 1.19357 1.22194 0.91278 0.96782 0.95567 0.92151 0.92185 0.92447 0.92221 0.92168 0.89960 0.90044 0.93515 0.93398 0.74562 0.89947 0.88778 0.94178 0.89083 0.95751 0.91484 0.92261 0.96900 0.93222 0.92997 0.92184 0.95120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.49 5.93 30.60 0.18 -1.31 16 3 C -0.12 -1.35 5.33 30.60 0.16 -1.19 16 4 C 0.12 2.28 5.67 86.38 0.49 2.77 16 5 N -0.72 -14.14 5.56 -463.06 -2.57 -16.71 16 6 C 0.48 14.25 6.01 87.66 0.53 14.78 16 7 O -0.58 -23.84 12.47 -3.03 -0.04 -23.88 16 8 C 0.06 1.71 2.97 44.17 0.13 1.84 16 9 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 10 C -0.14 -3.45 8.52 71.98 0.61 -2.84 16 11 N -0.51 -19.37 4.74 -875.50 -4.15 -23.52 16 12 C 0.06 2.11 4.87 86.33 0.42 2.53 16 13 C -0.11 -4.46 6.09 30.65 0.19 -4.28 16 14 C -0.10 -5.23 5.03 30.67 0.15 -5.08 16 15 C 0.05 3.01 2.20 -11.49 -0.03 2.98 16 16 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 17 C -0.54 -32.18 8.55 25.60 0.22 -31.96 16 18 H 0.04 2.63 7.76 -2.91 -0.02 2.61 16 19 C 0.02 0.95 5.21 84.65 0.44 1.39 16 20 N -0.91 -55.74 11.75 21.45 0.25 -55.49 16 21 Si 0.95 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 25 C 0.07 3.25 3.82 86.32 0.33 3.58 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 4.87 8.47 -92.71 -0.79 4.08 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.25 6.19 -2.39 -0.01 1.23 16 39 H 0.09 2.67 8.12 -2.39 -0.02 2.65 16 40 H 0.02 1.01 6.02 -2.39 -0.01 1.00 16 41 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 43 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 2.86 6.51 -2.39 -0.02 2.85 16 45 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 46 H 0.06 2.77 5.81 -2.39 -0.01 2.75 16 47 H 0.03 1.60 5.75 -2.39 -0.01 1.59 16 Total: -1.00 -74.60 358.73 0.21 -74.39 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.14 Total: 14.27 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.55 Total: -17.44 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -6.47 Total: -95.72 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -74.60 0.21 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397686743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.451 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds