Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47533 * 2 1 4 4 C 1.52998 * 109.47533 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47089 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99526 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00598 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99949 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.46644 * 300.00092 * 8 6 5 10 10 C 1.53000 * 109.46659 * 59.99933 * 8 6 5 11 11 N 1.46900 * 109.47057 * 180.02562 * 8 6 5 12 12 C 1.46846 * 111.00114 * 298.95526 * 11 8 6 13 13 C 1.53036 * 109.52349 * 185.84585 * 12 11 8 14 14 C 1.53125 * 109.27165 * 300.81535 * 13 12 11 15 15 C 1.53117 * 109.16196 * 57.66168 * 14 13 12 16 16 H 1.08993 * 109.50670 * 62.31934 * 15 14 13 17 17 C 1.50699 * 109.50510 * 182.40366 * 15 14 13 18 18 H 1.08002 * 120.00516 * 119.99140 * 17 15 14 19 19 C 1.37884 * 119.99783 * 299.99440 * 17 15 14 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99956 * 180.27458 * 19 17 15 22 22 H 1.48497 * 109.47172 * 179.72730 * 21 19 17 23 23 H 1.48506 * 109.47132 * 299.72429 * 21 19 17 24 24 H 1.48501 * 109.47173 * 59.72550 * 21 19 17 25 25 C 1.46847 * 110.99851 * 63.16558 * 11 8 6 26 26 H 1.08999 * 109.47496 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46891 * 300.00606 * 1 2 3 28 28 H 1.09003 * 109.46774 * 59.99799 * 1 2 3 29 29 H 1.09001 * 109.46891 * 239.99394 * 2 1 3 30 30 H 1.09003 * 109.46774 * 120.00201 * 2 1 3 31 31 H 1.08996 * 109.47279 * 59.99384 * 3 2 1 32 32 H 1.09008 * 109.46812 * 299.99948 * 3 2 1 33 33 H 1.09001 * 109.46891 * 59.99394 * 4 3 2 34 34 H 1.09003 * 109.46774 * 300.00201 * 4 3 2 35 35 H 0.96989 * 120.00563 * 0.02562 * 5 4 3 36 36 H 1.09007 * 109.46666 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.47568 * 299.99745 * 10 8 6 38 38 H 1.09000 * 109.47462 * 60.00661 * 10 8 6 39 39 H 1.08996 * 109.46232 * 65.81973 * 12 11 8 40 40 H 1.09002 * 109.45872 * 305.85295 * 12 11 8 41 41 H 1.08993 * 109.50439 * 180.88183 * 13 12 11 42 42 H 1.08996 * 109.50403 * 60.75389 * 13 12 11 43 43 H 1.08993 * 109.52792 * 297.74908 * 14 13 12 44 44 H 1.09008 * 109.52063 * 177.55981 * 14 13 12 45 45 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46552 * 54.14403 * 25 11 8 47 47 H 1.09000 * 109.46059 * 294.16829 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0698 0.0010 7 8 6.1716 2.1480 0.0018 8 6 5.8859 4.4906 0.0009 9 1 5.5233 5.0041 -0.8895 10 6 5.3750 5.2122 1.2496 11 7 7.3549 4.4905 0.0014 12 6 7.8807 3.8270 1.2012 13 6 9.4036 3.9732 1.2407 14 6 10.0046 3.3429 -0.0188 15 6 9.4045 4.0189 -1.2546 16 1 9.6683 5.0764 -1.2551 17 6 9.9464 3.3645 -2.4992 18 1 9.2722 2.8932 -3.1990 19 6 11.3033 3.3673 -2.7445 20 7 12.1244 3.9407 -1.8921 21 14 11.9744 2.5629 -4.2911 22 1 13.4520 2.7069 -4.3226 23 1 11.6174 1.1214 -4.2941 24 1 11.3873 3.2207 -5.4859 25 6 7.8815 3.8714 -1.2216 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9283 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.4282 3.5609 -0.0003 36 1 5.7380 6.2400 1.2493 37 1 4.2850 5.2123 1.2487 38 1 5.7376 4.6987 2.1400 39 1 7.6178 2.7695 1.1761 40 1 7.4486 4.2875 2.0897 41 1 9.7950 3.4672 2.1231 42 1 9.6668 5.0302 1.2797 43 1 9.7745 2.2777 -0.0384 44 1 11.0857 3.4830 -0.0158 45 1 13.0790 3.9423 -2.0645 46 1 7.4500 4.3641 -2.0929 47 1 7.6187 2.8136 -1.2354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397686744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -53.723738 kcal Electronic energy + Delta-G solvation = -23278.251707 eV Core-core repulsion = 20074.087956 eV Total energy + Delta-G solvation = -3204.163751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23987 -37.61309 -36.14074 -34.20577 -33.77050 -32.09717 -30.08264 -29.49537 -28.51406 -25.06851 -24.45637 -23.42679 -21.88724 -21.59964 -21.18197 -19.63992 -18.61151 -16.74575 -16.44155 -16.12552 -15.86167 -15.03732 -14.83674 -14.49254 -14.23495 -13.96210 -13.71546 -13.48682 -13.16664 -12.67535 -12.60253 -12.48434 -12.22510 -11.86874 -11.80393 -11.63977 -11.45577 -11.42214 -11.38287 -11.08193 -10.97276 -10.82621 -10.58040 -10.40424 -9.92148 -9.88028 -9.67304 -9.32688 -8.94148 -8.88371 -8.57321 -8.18008 -7.39050 -5.86275 -3.91405 2.82887 3.25018 3.39549 3.43317 3.46562 4.42219 4.52702 4.59113 4.59722 4.70930 4.94725 5.05743 5.18733 5.24872 5.29149 5.34087 5.43373 5.44747 5.57199 5.58328 5.69320 5.78519 5.87470 5.92539 5.95115 5.98334 6.07850 6.19364 6.28236 6.42857 6.58170 6.69091 6.71773 6.92724 7.01933 7.17003 7.37691 7.45970 7.58571 7.77462 7.86443 7.92426 8.23282 8.30750 8.43537 8.62518 9.12206 9.71686 11.19725 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.003856 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.346479 B = 7260.022741 C = 8209.536971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.737 5.737 6 C 0.481 3.519 7 O -0.520 6.520 8 C 0.062 3.938 9 H 0.102 0.898 10 C -0.140 4.140 11 N -0.508 5.508 12 C 0.043 3.957 13 C -0.114 4.114 14 C -0.109 4.109 15 C 0.059 3.941 16 H 0.030 0.970 17 C -0.510 4.510 18 H 0.051 0.949 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.288 1.288 23 H -0.278 1.278 24 H -0.278 1.278 25 C 0.053 3.947 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.259 0.741 46 H 0.049 0.951 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 -1.370 6.887 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.392 5.392 6 C 0.267 3.733 7 O -0.396 6.396 8 C -0.052 4.052 9 H 0.120 0.880 10 C -0.197 4.197 11 N -0.231 5.231 12 C -0.084 4.084 13 C -0.152 4.152 14 C -0.147 4.147 15 C 0.040 3.960 16 H 0.048 0.952 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.073 4.073 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.336 -1.517 6.918 21.534 hybrid contribution -0.251 -0.988 -0.913 1.368 sum -20.587 -2.505 6.005 21.591 Atomic orbital electron populations 1.21764 0.95595 1.01745 1.01812 1.21442 0.95981 0.96071 1.02606 1.21818 0.94446 0.97936 1.02593 1.21321 0.93342 0.83840 1.02273 1.46313 1.07665 1.08274 1.76915 1.22558 0.81841 0.93535 0.75415 1.90689 1.54362 1.46755 1.47749 1.21959 0.91801 0.90688 1.00715 0.87992 1.21827 0.99658 1.01671 0.96569 1.62516 1.01389 1.54624 1.04595 1.22338 0.96481 0.98364 0.91253 1.21639 0.93520 1.00853 0.99213 1.21617 1.02886 0.97319 0.92843 1.18610 0.87310 0.96763 0.93337 0.95215 1.21126 0.91971 1.35889 1.05903 0.93042 1.24927 0.97061 0.95468 0.96441 1.69893 1.03038 1.44372 1.35606 0.86704 0.77666 0.79959 0.83907 1.21373 1.20420 1.20378 1.22519 0.99122 0.97521 0.88156 0.92636 0.92738 0.92699 0.91606 0.91681 0.91430 0.91352 0.91718 0.91845 0.76995 0.90580 0.92531 0.92010 0.92448 0.92886 0.93781 0.92555 0.95020 0.89367 0.93139 0.93224 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.13 -0.95 5.33 -26.73 -0.14 -1.09 16 4 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 5 N -0.74 -8.31 5.45 -60.29 -0.33 -8.64 16 6 C 0.48 7.51 6.57 -10.98 -0.07 7.43 16 7 O -0.52 -10.56 11.61 5.56 0.06 -10.50 16 8 C 0.06 0.92 2.80 -68.86 -0.19 0.72 16 9 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 10 C -0.14 -1.57 8.84 37.16 0.33 -1.25 16 11 N -0.51 -9.86 4.66 -228.08 -1.06 -10.92 16 12 C 0.04 0.84 4.76 -3.84 -0.02 0.82 16 13 C -0.11 -2.44 6.09 -26.65 -0.16 -2.60 16 14 C -0.11 -2.78 5.02 -26.61 -0.13 -2.92 16 15 C 0.06 1.56 2.27 -91.69 -0.21 1.35 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.51 -14.78 8.56 -34.44 -0.29 -15.07 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -26.38 11.35 55.43 0.63 -25.75 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.05 1.23 4.28 -3.83 -0.02 1.21 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.21 7.89 -40.82 -0.32 2.89 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 38 H 0.06 0.75 6.26 -51.93 -0.33 0.42 16 39 H 0.06 1.23 5.59 -51.93 -0.29 0.94 16 40 H 0.05 0.90 5.98 -51.93 -0.31 0.58 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.48 6.15 -51.92 -0.32 2.16 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 47 H 0.05 1.28 5.76 -51.93 -0.30 0.98 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -32.44 356.71 -9.72 -42.16 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.56 Total: 1.17 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.82 Total: -10.02 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.76 Total: -45.32 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.44 -9.72 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397686744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.560 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds