Wall clock time and date at job start Tue Mar 31 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47170 * 2 1 4 4 C 1.52995 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00139 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00116 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00172 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.47114 * 45.27698 * 8 6 5 10 10 C 1.53001 * 109.46996 * 285.27500 * 8 6 5 11 11 N 1.46904 * 109.47238 * 165.27779 * 8 6 5 12 12 C 1.46845 * 110.99994 * 196.43633 * 11 8 6 13 13 C 1.53036 * 109.52574 * 174.15966 * 12 11 8 14 14 C 1.53127 * 109.27467 * 59.18100 * 13 12 11 15 15 C 1.53120 * 109.15924 * 302.34644 * 14 13 12 16 16 H 1.08998 * 109.53712 * 297.69226 * 15 14 13 17 17 C 1.50700 * 109.49992 * 177.59637 * 15 14 13 18 18 H 1.08003 * 120.00271 * 240.19405 * 17 15 14 19 19 C 1.37883 * 120.00037 * 60.19701 * 17 15 14 20 20 N 1.31512 * 119.99787 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47577 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46922 * 120.00417 * 21 19 17 24 24 H 1.48511 * 109.47099 * 239.99896 * 21 19 17 25 25 C 1.46851 * 111.00024 * 72.23155 * 11 8 6 26 26 H 1.09004 * 109.47441 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47506 * 300.00331 * 1 2 3 28 28 H 1.08998 * 109.47131 * 60.00029 * 1 2 3 29 29 H 1.08997 * 109.47506 * 239.99669 * 2 1 3 30 30 H 1.08998 * 109.47131 * 119.99971 * 2 1 3 31 31 H 1.09000 * 109.46865 * 59.99871 * 3 2 1 32 32 H 1.08998 * 109.47070 * 300.00008 * 3 2 1 33 33 H 1.08997 * 109.47506 * 59.99669 * 4 3 2 34 34 H 1.09010 * 109.47261 * 299.99492 * 4 3 2 35 35 H 0.96998 * 120.00279 * 0.02562 * 5 4 3 36 36 H 1.08995 * 109.47335 * 179.97438 * 10 8 6 37 37 H 1.09001 * 109.47350 * 300.00052 * 10 8 6 38 38 H 1.09011 * 109.46971 * 59.99877 * 10 8 6 39 39 H 1.09003 * 109.46626 * 294.17886 * 12 11 8 40 40 H 1.09005 * 109.46267 * 54.14782 * 12 11 8 41 41 H 1.08998 * 109.50152 * 299.24229 * 13 12 11 42 42 H 1.08993 * 109.53697 * 179.14318 * 13 12 11 43 43 H 1.09003 * 109.51909 * 182.44048 * 14 13 12 44 44 H 1.08996 * 109.52193 * 62.25332 * 14 13 12 45 45 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.46160 * 305.85485 * 25 11 8 47 47 H 1.09000 * 109.46439 * 65.82074 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3833 3.0700 0.0001 7 8 6.1715 2.1482 0.0001 8 6 5.8856 4.4909 0.0013 9 1 5.3250 5.0738 0.7320 10 6 5.6972 5.0996 -1.3897 11 7 7.3118 4.5057 0.3532 12 6 7.7434 5.8538 0.7442 13 6 9.1898 5.8037 1.2415 14 6 10.0892 5.2629 0.1265 15 6 9.5891 3.8787 -0.2958 16 1 9.6591 3.1927 0.5483 17 6 10.4331 3.3643 -1.4334 18 1 9.9757 3.1356 -2.3847 19 6 11.7892 3.1857 -1.2599 20 7 12.3461 3.4637 -0.1014 21 14 12.8351 2.5474 -2.6698 22 1 11.9751 2.3122 -3.8573 23 1 13.8782 3.5497 -3.0055 24 1 13.4840 1.2735 -2.2677 25 6 8.1312 3.9847 -0.7485 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.4280 3.5610 0.0011 36 1 6.0601 6.1273 -1.3888 37 1 6.2578 4.5166 -2.1204 38 1 4.6389 5.0885 -1.6508 39 1 7.6780 6.5199 -0.1161 40 1 7.0982 6.2249 1.5406 41 1 9.2534 5.1485 2.1103 42 1 9.5153 6.8066 1.5175 43 1 11.1137 5.1847 0.4906 44 1 10.0560 5.9386 -0.7282 45 1 13.3002 3.3383 0.0206 46 1 7.7676 2.9982 -1.0364 47 1 8.0639 4.6596 -1.6018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397686745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:33 Heat of formation + Delta-G solvation = -55.619330 kcal Electronic energy + Delta-G solvation = -23080.381664 eV Core-core repulsion = 19876.135714 eV Total energy + Delta-G solvation = -3204.245950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92328 -37.90812 -36.18117 -34.15043 -33.68972 -32.18154 -29.77300 -29.56214 -28.43392 -25.07330 -24.84960 -23.51563 -21.79773 -21.55773 -21.22370 -19.72374 -18.28177 -16.72834 -16.43812 -16.07976 -15.80312 -14.93173 -14.77324 -14.27588 -14.09117 -14.02729 -13.80080 -13.57018 -13.22176 -12.80078 -12.63583 -12.45249 -12.25831 -12.06118 -11.82492 -11.56964 -11.47941 -11.43873 -11.38746 -11.19037 -10.92755 -10.86844 -10.56178 -10.52427 -9.99693 -9.75734 -9.49702 -9.30811 -8.96879 -8.79491 -8.50622 -8.19290 -7.54563 -5.86322 -3.90928 2.97500 3.20790 3.37056 3.44587 3.49093 4.46747 4.56307 4.61959 4.63170 4.74582 4.96098 5.08994 5.21111 5.23753 5.28445 5.36935 5.43792 5.47740 5.61130 5.64958 5.70016 5.72303 5.78926 5.83845 5.92529 5.96168 6.01972 6.08218 6.23084 6.33582 6.50699 6.54315 6.73983 6.78644 6.85529 7.18843 7.32536 7.45565 7.62214 7.75037 7.87233 7.92450 8.25501 8.30530 8.56046 8.61956 9.13361 9.72216 11.20125 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003693 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.891781 B = 7579.505289 C = 8485.870090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.741 5.741 6 C 0.517 3.483 7 O -0.505 6.505 8 C 0.065 3.935 9 H 0.093 0.907 10 C -0.179 4.179 11 N -0.518 5.518 12 C 0.063 3.937 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.507 4.507 18 H 0.052 0.948 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.063 3.937 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.257 0.743 46 H 0.079 0.921 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.999 1.582 1.071 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.004 4.004 5 N -0.395 5.395 6 C 0.302 3.698 7 O -0.378 6.378 8 C -0.048 4.048 9 H 0.111 0.889 10 C -0.238 4.238 11 N -0.242 5.242 12 C -0.064 4.064 13 C -0.154 4.154 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.546 4.546 18 H 0.071 0.929 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.063 4.063 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -21.137 0.568 1.565 21.202 hybrid contribution 0.131 0.610 -1.423 1.554 sum -21.006 1.178 0.142 21.040 Atomic orbital electron populations 1.21763 0.95649 1.01724 1.01780 1.21442 0.95923 0.96083 1.02664 1.21818 0.94494 0.97918 1.02567 1.21303 0.93213 0.83481 1.02429 1.46028 1.07254 1.08331 1.77924 1.20677 0.81616 0.91748 0.75745 1.90739 1.54628 1.46050 1.46357 1.21563 0.93363 0.92763 0.97086 0.88925 1.22372 1.01834 1.01946 0.97669 1.61954 0.99161 1.22506 1.40565 1.22071 0.97658 0.88639 0.98078 1.21666 0.93661 0.99504 1.00604 1.21670 1.00941 0.97559 0.94761 1.18640 0.87757 0.93279 0.96614 0.94760 1.21188 0.92594 1.42794 0.98014 0.92944 1.24931 0.97948 0.95585 0.95511 1.69910 1.11066 1.49130 1.22825 0.86592 0.80393 0.78534 0.82786 1.19904 1.21208 1.21088 1.22496 0.95802 0.98684 0.89299 0.92652 0.92742 0.92749 0.91605 0.91589 0.91393 0.91433 0.91703 0.91635 0.77139 0.91515 0.91042 0.92428 0.95661 0.92549 0.92064 0.93496 0.89172 0.95265 0.93263 0.90306 0.96454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.53 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.13 -0.94 5.33 -26.73 -0.14 -1.08 16 4 C 0.12 1.28 5.67 -4.04 -0.02 1.25 16 5 N -0.74 -8.47 5.56 -60.29 -0.33 -8.80 16 6 C 0.52 8.35 6.97 -10.99 -0.08 8.28 16 7 O -0.51 -10.82 14.31 5.56 0.08 -10.74 16 8 C 0.07 0.98 2.70 -68.86 -0.19 0.80 16 9 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 10 C -0.18 -2.37 8.30 37.16 0.31 -2.06 16 11 N -0.52 -10.09 4.35 -228.07 -0.99 -11.08 16 12 C 0.06 1.12 5.22 -3.84 -0.02 1.10 16 13 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 14 C -0.11 -2.73 5.03 -26.60 -0.13 -2.87 16 15 C 0.06 1.49 2.26 -91.69 -0.21 1.29 16 16 H 0.03 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.51 -14.68 8.56 -34.44 -0.29 -14.98 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -26.43 11.36 55.43 0.63 -25.80 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.06 1.46 3.39 -3.84 -0.01 1.44 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.40 3.20 8.47 -40.82 -0.35 2.85 16 36 H 0.07 0.86 7.09 -51.93 -0.37 0.49 16 37 H 0.07 1.12 6.45 -51.93 -0.33 0.78 16 38 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.03 0.43 7.13 -51.93 -0.37 0.06 16 40 H 0.06 0.85 7.95 -51.93 -0.41 0.43 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.08 1.97 5.90 -51.92 -0.31 1.66 16 47 H 0.02 0.39 6.59 -51.93 -0.34 0.05 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.93 360.75 -9.71 -42.64 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.67 Total: 0.44 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.84 Total: -9.22 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.70 Total: -45.68 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.93 -9.71 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397686745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.983 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds