Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.52993 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47616 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00485 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00202 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.47087 * 33.20199 * 8 6 5 10 10 C 1.52992 * 109.47248 * 273.20202 * 8 6 5 11 11 N 1.46898 * 109.47335 * 153.19786 * 8 6 5 12 12 C 1.46843 * 111.00120 * 172.96353 * 11 8 6 13 13 C 1.53044 * 109.52412 * 185.84243 * 12 11 8 14 14 C 1.53120 * 109.27730 * 300.82306 * 13 12 11 15 15 C 1.53114 * 109.16394 * 57.65082 * 14 13 12 16 16 H 1.09005 * 109.53195 * 62.30485 * 15 14 13 17 17 C 1.50698 * 109.50662 * 182.40640 * 15 14 13 18 18 H 1.08000 * 120.00295 * 119.53310 * 17 15 14 19 19 C 1.37881 * 119.99796 * 299.80347 * 17 15 14 20 20 N 1.31514 * 120.00045 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00042 * 0.02562 * 19 17 15 22 22 H 1.48498 * 109.46984 * 89.99651 * 21 19 17 23 23 H 1.48496 * 109.47160 * 209.99884 * 21 19 17 24 24 H 1.48496 * 109.46975 * 329.99776 * 21 19 17 25 25 C 1.46843 * 111.00219 * 297.17844 * 11 8 6 26 26 H 1.08993 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46572 * 300.00320 * 1 2 3 28 28 H 1.08994 * 109.46718 * 60.00266 * 1 2 3 29 29 H 1.08995 * 109.47454 * 239.99804 * 2 1 3 30 30 H 1.09003 * 109.46782 * 119.99658 * 2 1 3 31 31 H 1.09001 * 109.47472 * 59.99560 * 3 2 1 32 32 H 1.09002 * 109.46806 * 300.00071 * 3 2 1 33 33 H 1.09001 * 109.47329 * 59.99323 * 4 3 2 34 34 H 1.09002 * 109.47117 * 299.99731 * 4 3 2 35 35 H 0.97002 * 119.99739 * 0.02562 * 5 4 3 36 36 H 1.09006 * 109.47403 * 180.02562 * 10 8 6 37 37 H 1.09000 * 109.47075 * 300.00005 * 10 8 6 38 38 H 1.09001 * 109.47335 * 59.99945 * 10 8 6 39 39 H 1.08996 * 109.46493 * 305.85536 * 12 11 8 40 40 H 1.08997 * 109.46420 * 65.82697 * 12 11 8 41 41 H 1.09002 * 109.50517 * 60.76103 * 13 12 11 42 42 H 1.09004 * 109.50306 * 180.87996 * 13 12 11 43 43 H 1.09007 * 109.52274 * 297.74719 * 14 13 12 44 44 H 1.09005 * 109.52336 * 177.55836 * 14 13 12 45 45 H 0.97001 * 120.00007 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46767 * 54.14133 * 25 11 8 47 47 H 1.09003 * 109.45389 * 294.16724 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 5.3835 3.0700 -0.0014 7 8 6.1716 2.1481 -0.0005 8 6 5.8858 4.4908 -0.0014 9 1 5.1963 5.1200 0.5614 10 6 5.9798 4.9984 -1.4416 11 7 7.2146 4.5404 0.6230 12 6 7.8079 5.8772 0.4922 13 6 9.2436 5.8536 1.0217 14 6 9.2338 5.4205 2.4903 15 6 8.5672 4.0469 2.6047 16 1 9.1479 3.3124 2.0465 17 6 8.5002 3.6392 4.0540 18 1 7.5432 3.4571 4.5201 19 6 9.6606 3.5042 4.7865 20 7 9.6021 3.1490 6.0514 21 14 11.3155 3.8273 3.9826 22 1 11.6736 5.2592 4.1450 23 1 12.3523 2.9816 4.6269 24 1 11.2362 3.4978 2.5368 25 6 7.1512 4.1228 2.0293 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.4281 3.5610 -0.0008 36 1 6.3436 6.0260 -1.4417 37 1 6.6693 4.3692 -2.0044 38 1 4.9938 4.9617 -1.9049 39 1 7.8127 6.1714 -0.5573 40 1 7.2205 6.5931 1.0672 41 1 9.8352 5.1481 0.4382 42 1 9.6785 6.8498 0.9389 43 1 8.6750 6.1469 3.0806 44 1 10.2578 5.3604 2.8592 45 1 10.4184 3.0544 6.5668 46 1 6.6789 3.1427 2.0963 47 1 6.5669 4.8470 2.5971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397686746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -48.881622 kcal Electronic energy + Delta-G solvation = -23159.732599 eV Core-core repulsion = 19955.778818 eV Total energy + Delta-G solvation = -3203.953781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97772 -38.08280 -36.22485 -34.37471 -33.70527 -32.24917 -30.40461 -29.92673 -28.83287 -25.39200 -24.40045 -23.65504 -22.24433 -21.54839 -20.83811 -19.71309 -18.86841 -16.97932 -16.69129 -16.25968 -16.03699 -15.38774 -14.80817 -14.36868 -14.26237 -13.98935 -13.80201 -13.66083 -13.20393 -12.94012 -12.82314 -12.61823 -12.44829 -12.25595 -12.03691 -11.90159 -11.68670 -11.44883 -11.39142 -11.34214 -10.98874 -10.94068 -10.89543 -10.40954 -10.03878 -9.90518 -9.60094 -9.41826 -9.06254 -8.96644 -8.83981 -8.43649 -7.78942 -5.99580 -3.97851 2.87641 3.16780 3.34186 3.46037 3.51345 4.29088 4.50211 4.57582 4.65429 4.71748 4.89085 5.09796 5.14669 5.18762 5.28437 5.31668 5.38637 5.41929 5.50226 5.55942 5.60529 5.63330 5.70147 5.75249 5.84987 5.86366 5.98172 6.01047 6.03924 6.13244 6.19625 6.33638 6.36061 6.48132 6.51833 6.69034 6.84613 6.90159 7.27974 7.41306 7.48858 7.68818 7.76733 7.93094 8.47285 8.60151 9.03363 9.63595 11.13825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.004141 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.022669 B = 6760.789332 C = 7910.616690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.119 3.881 5 N -0.739 5.739 6 C 0.517 3.483 7 O -0.507 6.507 8 C 0.067 3.933 9 H 0.053 0.947 10 C -0.142 4.142 11 N -0.520 5.520 12 C 0.061 3.939 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.038 0.962 17 C -0.511 4.511 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.077 3.923 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 2.477 -15.749 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.394 5.394 6 C 0.302 3.698 7 O -0.380 6.380 8 C -0.045 4.045 9 H 0.070 0.930 10 C -0.199 4.199 11 N -0.246 5.246 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.161 4.161 15 C 0.003 3.997 16 H 0.056 0.944 17 C -0.549 4.549 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.543 5.543 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.049 4.049 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.494 1.403 -15.834 21.512 hybrid contribution 0.049 1.125 0.290 1.162 sum -14.446 2.527 -15.544 21.370 Atomic orbital electron populations 1.21763 0.95622 1.01737 1.01795 1.21443 0.95961 0.96027 1.02673 1.21819 0.94384 0.98002 1.02624 1.21328 0.93366 0.83280 1.02503 1.46044 1.07238 1.08549 1.77527 1.20558 0.81744 0.91579 0.75953 1.90740 1.54949 1.45840 1.46435 1.21500 0.92653 0.92903 0.97473 0.92952 1.21837 1.02186 1.01995 0.93907 1.61811 1.18216 1.25941 1.18601 1.22107 0.95976 0.88697 0.99906 1.21653 0.95373 1.00247 0.98419 1.22039 1.00318 1.00258 0.93436 1.19122 0.91469 0.92609 0.96474 0.94425 1.20992 0.94761 1.46020 0.93135 0.91128 1.24975 0.99030 0.94528 0.94608 1.69905 1.28314 1.48320 1.07733 0.86821 0.83731 0.77304 0.80315 1.20761 1.22651 1.18683 1.22132 0.99956 0.99099 0.83726 0.92639 0.92660 0.92803 0.91687 0.91464 0.91257 0.91476 0.91726 0.91394 0.77033 0.91152 0.91047 0.92221 0.91137 0.95368 0.91660 0.92664 0.92606 0.93508 0.92776 0.91198 0.95909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.13 -1.00 5.33 -26.73 -0.14 -1.14 16 4 C 0.12 1.30 5.67 -4.05 -0.02 1.28 16 5 N -0.74 -8.64 5.56 -60.30 -0.33 -8.97 16 6 C 0.52 8.21 5.96 -10.99 -0.07 8.15 16 7 O -0.51 -10.55 15.75 5.56 0.09 -10.46 16 8 C 0.07 0.97 2.47 -68.87 -0.17 0.80 16 9 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 10 C -0.14 -1.59 8.72 37.15 0.32 -1.27 16 11 N -0.52 -9.55 4.22 -228.09 -0.96 -10.51 16 12 C 0.06 0.98 5.06 -3.83 -0.02 0.96 16 13 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 14 C -0.12 -2.75 4.74 -26.61 -0.13 -2.88 16 15 C 0.02 0.56 1.85 -91.69 -0.17 0.39 16 16 H 0.04 1.02 7.20 -51.93 -0.37 0.65 16 17 C -0.51 -14.96 9.14 -34.44 -0.31 -15.27 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 20 N -0.90 -28.50 13.96 55.43 0.77 -27.73 16 21 Si 0.89 22.97 24.36 -169.99 -4.14 18.83 16 22 H -0.28 -6.99 6.89 56.52 0.39 -6.60 16 23 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 25 C 0.08 1.70 4.41 -3.83 -0.02 1.68 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.37 8.47 -40.82 -0.35 3.02 16 36 H 0.07 0.70 6.19 -51.93 -0.32 0.38 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.94 5.85 -51.93 -0.30 0.64 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 44 H 0.05 1.11 3.37 -51.93 -0.17 0.93 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.07 1.66 6.46 -51.93 -0.34 1.32 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -34.43 357.37 -8.61 -43.03 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.64 Total: -0.29 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.77 Total: -9.27 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.52 Total: -47.21 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.14 Total: 18.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.43 -8.61 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397686746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.849 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds