Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 C 1.53005 * 109.47443 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47241 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99797 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99898 * 180.27352 * 6 5 4 9 9 N 1.46894 * 109.47436 * 173.45699 * 8 6 5 10 10 C 1.46847 * 111.00301 * 169.40141 * 9 8 6 11 11 C 1.53039 * 109.52415 * 185.84283 * 10 9 8 12 12 C 1.53126 * 109.27449 * 300.81595 * 11 10 9 13 13 C 1.53001 * 109.57069 * 177.58955 * 12 11 10 14 14 C 1.50700 * 109.47140 * 65.29233 * 13 12 11 15 15 H 1.08000 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00236 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00249 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99942 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47483 * 89.99924 * 18 16 14 20 20 H 1.48501 * 109.47140 * 210.00230 * 18 16 14 21 21 H 1.48505 * 109.47090 * 329.99821 * 18 16 14 22 22 C 1.53124 * 109.15864 * 57.65819 * 12 11 10 23 23 C 1.46847 * 111.00173 * 293.61382 * 9 8 6 24 24 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47120 * 300.00141 * 1 2 3 26 26 H 1.09005 * 109.46798 * 59.99742 * 1 2 3 27 27 H 1.09006 * 109.47392 * 240.00207 * 2 1 3 28 28 H 1.09000 * 109.47264 * 120.00266 * 2 1 3 29 29 H 1.09000 * 109.47082 * 59.99835 * 3 2 1 30 30 H 1.09004 * 109.46880 * 299.99652 * 3 2 1 31 31 H 1.09000 * 109.47130 * 59.99848 * 4 3 2 32 32 H 1.09005 * 109.46780 * 300.00251 * 4 3 2 33 33 H 0.97001 * 120.00008 * 359.97438 * 5 4 3 34 34 H 1.09006 * 109.47110 * 293.46059 * 8 6 5 35 35 H 1.08999 * 109.47358 * 53.45628 * 8 6 5 36 36 H 1.08996 * 109.45875 * 305.85218 * 10 9 8 37 37 H 1.08992 * 109.46460 * 65.82544 * 10 9 8 38 38 H 1.08994 * 109.50626 * 180.88030 * 11 10 9 39 39 H 1.08996 * 109.50629 * 60.75326 * 11 10 9 40 40 H 1.08995 * 109.52557 * 297.75041 * 12 11 10 41 41 H 1.09003 * 109.46468 * 185.28348 * 13 12 11 42 42 H 1.08998 * 109.47580 * 305.28684 * 13 12 11 43 43 H 0.97000 * 120.00249 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.50017 * 182.40007 * 22 12 11 45 45 H 1.09002 * 109.50229 * 62.28469 * 22 12 11 46 46 H 1.09012 * 109.46038 * 294.17527 * 23 9 8 47 47 H 1.09002 * 109.46256 * 54.14936 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0698 0.0001 7 8 6.1716 2.1479 0.0001 8 6 5.8859 4.4906 0.0069 9 7 7.3464 4.4928 0.1635 10 6 7.8993 5.8321 -0.0753 11 6 9.4281 5.7667 -0.0476 12 6 9.8869 5.2403 1.3152 13 6 11.4117 5.1153 1.3294 14 6 12.0291 6.4849 1.2109 15 1 11.3971 7.3572 1.1329 16 6 13.4007 6.6244 1.2022 17 7 13.9395 7.8196 1.0983 18 14 14.4939 5.1158 1.3379 19 1 14.7872 4.5931 -0.0207 20 1 15.7649 5.4845 2.0116 21 1 13.7985 4.0704 2.1310 22 6 9.2585 3.8656 1.5603 23 6 7.7348 3.9861 1.4859 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 3.4281 3.5609 0.0003 34 1 5.6204 4.9744 -0.9331 35 1 5.4308 5.0329 0.8357 36 1 7.5689 6.1930 -1.0492 37 1 7.5508 6.5127 0.7015 38 1 9.8379 6.7637 -0.2093 39 1 9.7780 5.0969 -0.8330 40 1 9.5706 5.9301 2.0975 41 1 11.7296 4.6531 2.2640 42 1 11.7336 4.4979 0.4908 43 1 14.9045 7.9178 1.0918 44 1 9.5473 3.5043 2.5473 45 1 9.6058 3.1659 0.8001 46 1 7.3869 4.6754 2.2555 47 1 7.2849 3.0062 1.6458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399264666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = -63.146387 kcal Electronic energy + Delta-G solvation = -22173.915757 eV Core-core repulsion = 18969.343409 eV Total energy + Delta-G solvation = -3204.572348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02917 -38.32152 -36.46153 -34.43808 -33.96364 -32.22855 -30.33936 -29.98798 -28.73697 -26.38820 -23.93916 -22.96282 -22.52081 -21.76413 -20.57371 -20.21799 -18.93909 -17.03721 -16.68089 -16.38794 -16.32210 -15.40980 -15.13586 -14.47285 -14.28289 -14.25299 -14.02253 -13.61348 -13.58187 -13.06966 -12.84462 -12.79516 -12.69193 -12.22359 -11.97574 -11.72936 -11.59703 -11.59371 -11.54406 -11.28371 -11.10409 -10.92292 -10.63617 -10.51705 -10.12332 -9.82912 -9.68326 -9.51378 -9.28417 -9.12743 -8.90536 -8.45834 -8.09358 -5.97133 -3.93563 2.60272 2.89974 3.37506 3.44370 3.49799 4.11188 4.36153 4.45250 4.52909 4.54508 4.73768 4.91203 5.08102 5.10816 5.16926 5.19800 5.31243 5.35976 5.37183 5.42356 5.47917 5.55559 5.59732 5.64453 5.74029 5.77227 5.83639 5.90306 5.97109 6.11761 6.21510 6.34042 6.40952 6.56188 6.66402 6.93770 7.02099 7.10445 7.14999 7.34878 7.39868 7.42781 7.58926 7.89121 8.18113 8.62409 9.07973 9.66692 11.16250 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047754 B = 0.002538 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.196538 B =11027.696264 C =11404.570782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.740 5.740 6 C 0.511 3.489 7 O -0.514 6.514 8 C 0.036 3.964 9 N -0.520 5.520 10 C 0.057 3.943 11 C -0.101 4.101 12 C -0.074 4.074 13 C -0.010 4.010 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.266 1.266 22 C -0.112 4.112 23 C 0.058 3.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.024 0.976 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.387 -11.017 -2.180 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.394 5.394 6 C 0.297 3.703 7 O -0.387 6.387 8 C -0.095 4.095 9 N -0.245 5.245 10 C -0.070 4.070 11 C -0.138 4.138 12 C -0.092 4.092 13 C -0.047 4.047 14 C -0.550 4.550 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.149 4.149 23 C -0.069 4.069 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.408 -11.927 -2.534 29.087 hybrid contribution -0.025 0.251 0.638 0.686 sum -26.433 -11.675 -1.896 28.959 Atomic orbital electron populations 1.21764 0.95511 1.01836 1.01865 1.21440 0.96082 0.95930 1.02629 1.21831 0.94254 0.98094 1.02734 1.21331 0.93499 0.83182 1.02426 1.46048 1.07289 1.08693 1.77406 1.20728 0.81752 0.91914 0.75936 1.90719 1.54918 1.46091 1.47018 1.21940 0.91203 0.93383 1.02981 1.61645 1.06344 1.25109 1.31394 1.22235 0.97544 0.87355 0.99841 1.21554 0.91322 1.02638 0.98307 1.21069 0.97507 0.94298 0.96343 1.19615 0.91176 0.97670 0.96221 1.21164 0.91828 0.92418 1.49608 0.90981 1.25030 0.98216 0.95605 0.94785 1.69918 1.11183 1.22022 1.51513 0.86798 0.79975 0.84012 0.78628 1.20357 1.21592 1.19029 1.21681 0.92893 0.99099 1.01266 1.22189 0.97775 0.99507 0.87462 0.92571 0.92686 0.92687 0.91599 0.91610 0.91312 0.91289 0.91564 0.91640 0.76829 0.87987 0.92479 0.91355 0.95176 0.90239 0.91775 0.92489 0.96763 0.96933 0.92909 0.92243 0.91445 0.95807 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.15 0.37 -0.30 16 2 C -0.12 -0.62 5.93 -26.74 -0.16 -0.78 16 3 C -0.13 -0.67 5.33 -26.73 -0.14 -0.81 16 4 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 5 N -0.74 -6.20 5.56 -60.29 -0.33 -6.53 16 6 C 0.51 6.27 7.36 -10.99 -0.08 6.19 16 7 O -0.51 -8.65 14.71 5.55 0.08 -8.57 16 8 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16 9 N -0.52 -7.92 4.35 -236.12 -1.03 -8.95 16 10 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 11 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 12 C -0.07 -1.51 2.20 -90.49 -0.20 -1.71 16 13 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 14 C -0.51 -14.67 9.00 -34.44 -0.31 -14.98 16 15 H 0.07 2.19 7.32 -52.49 -0.38 1.81 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.31 13.96 55.43 0.77 -27.53 16 18 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 22 C -0.11 -2.03 5.38 -26.65 -0.14 -2.18 16 23 C 0.06 0.93 5.12 -3.84 -0.02 0.91 16 24 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 34 H 0.10 0.94 7.98 -51.93 -0.41 0.53 16 35 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 1.64 7.05 -51.93 -0.37 1.27 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.08 1.27 6.06 -51.93 -0.31 0.96 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -33.78 365.97 -9.69 -43.47 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.94 Total: -3.07 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.09 Total: -12.06 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.59 Total: -43.01 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.78 -9.69 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399264666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.679 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds