Wall clock time and date at job start Tue Mar 31 2020 06:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53005 * 109.46782 * 119.99826 * 2 1 3 5 5 N 1.46497 * 109.47241 * 65.00192 * 4 2 1 6 6 C 1.34778 * 119.99797 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99898 * 180.27352 * 6 5 4 9 9 N 1.46894 * 109.47436 * 173.45699 * 8 6 5 10 10 C 1.46847 * 111.00301 * 169.40141 * 9 8 6 11 11 C 1.53039 * 109.52415 * 185.84283 * 10 9 8 12 12 C 1.53126 * 109.27449 * 300.81595 * 11 10 9 13 13 C 1.53001 * 109.57069 * 177.58955 * 12 11 10 14 14 C 1.50700 * 109.47140 * 65.29233 * 13 12 11 15 15 H 1.08000 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00236 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47154 * 90.00313 * 18 16 14 20 20 H 1.48496 * 109.47160 * 209.99837 * 18 16 14 21 21 H 1.48501 * 109.47221 * 330.00250 * 18 16 14 22 22 C 1.53124 * 109.15864 * 57.65819 * 12 11 10 23 23 C 1.46847 * 111.00173 * 293.61382 * 9 8 6 24 24 H 1.09005 * 109.47204 * 60.00580 * 1 2 3 25 25 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47569 * 300.00428 * 1 2 3 27 27 H 1.09000 * 109.47569 * 239.99572 * 2 1 3 28 28 H 1.09003 * 109.46894 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47222 * 299.99794 * 3 2 1 30 30 H 1.09000 * 109.47297 * 59.99913 * 3 2 1 31 31 H 1.09000 * 109.47130 * 304.99862 * 4 2 1 32 32 H 1.09005 * 109.46780 * 185.00266 * 4 2 1 33 33 H 0.97001 * 120.00008 * 359.97438 * 5 4 2 34 34 H 1.09006 * 109.47110 * 293.46059 * 8 6 5 35 35 H 1.08999 * 109.47358 * 53.45628 * 8 6 5 36 36 H 1.08996 * 109.45875 * 305.85218 * 10 9 8 37 37 H 1.08992 * 109.46460 * 65.82544 * 10 9 8 38 38 H 1.08994 * 109.50626 * 180.88030 * 11 10 9 39 39 H 1.08996 * 109.50629 * 60.75326 * 11 10 9 40 40 H 1.08995 * 109.52557 * 297.75041 * 12 11 10 41 41 H 1.09003 * 109.46468 * 185.28348 * 13 12 11 42 42 H 1.08998 * 109.47580 * 305.28684 * 13 12 11 43 43 H 0.97007 * 120.00137 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.50017 * 182.40007 * 22 12 11 45 45 H 1.09002 * 109.50229 * 62.28469 * 22 12 11 46 46 H 1.09012 * 109.46038 * 294.17527 * 23 9 8 47 47 H 1.09002 * 109.46256 * 54.14936 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 1.9963 -2.9681 2.1909 7 8 2.6271 -2.5513 3.1392 8 6 1.6030 -4.4215 2.1276 9 7 2.2231 -5.1457 3.2451 10 6 1.6694 -6.5004 3.3663 11 6 2.2291 -7.1712 4.6228 12 6 3.7562 -7.2307 4.5264 13 6 4.3269 -7.8458 5.8058 14 6 3.8854 -9.2827 5.9127 15 1 3.2598 -9.7139 5.1451 16 6 4.2799 -10.0468 6.9903 17 7 5.0420 -9.5218 7.9248 18 14 3.7319 -11.8276 7.1232 19 1 4.7278 -12.7032 6.4545 20 1 3.6222 -12.2063 8.5548 21 1 2.4102 -11.9893 6.4657 22 6 4.3044 -5.8116 4.3522 23 6 3.6844 -5.1801 3.1037 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6052 -0.2617 2.1370 32 1 3.1262 -0.6443 1.2953 33 1 1.1482 -2.4662 0.4320 34 1 0.5185 -4.5077 2.1959 35 1 1.9427 -4.8492 1.1844 36 1 0.5833 -6.4436 3.4383 37 1 1.9450 -7.0853 2.4889 38 1 1.8301 -8.1822 4.7041 39 1 1.9422 -6.5943 5.5019 40 1 4.0437 -7.8399 3.6696 41 1 5.4156 -7.8016 5.7757 42 1 3.9644 -7.2890 6.6698 43 1 5.3199 -10.0596 8.6829 44 1 5.3878 -5.8512 4.2403 45 1 4.0500 -5.2133 5.2272 46 1 3.9506 -5.7713 2.2274 47 1 4.0618 -4.1645 2.9850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399288539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:44 Heat of formation + Delta-G solvation = -63.461283 kcal Electronic energy + Delta-G solvation = -22415.022933 eV Core-core repulsion = 19210.436930 eV Total energy + Delta-G solvation = -3204.586003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03254 -38.32525 -36.83924 -34.33553 -33.45957 -32.21593 -30.27447 -29.08264 -27.64179 -27.00806 -25.27024 -23.36315 -22.47845 -20.91097 -20.73703 -20.17605 -18.84285 -17.03909 -16.58107 -16.21601 -15.83569 -15.31228 -15.00073 -14.49189 -14.41076 -14.19175 -13.80245 -13.51225 -13.38139 -13.04910 -12.85225 -12.73869 -12.50336 -12.30461 -12.05135 -11.70209 -11.56571 -11.39130 -11.34077 -11.16226 -11.05491 -10.80448 -10.58901 -10.54591 -10.27101 -9.92996 -9.69308 -9.44900 -9.21680 -8.97361 -8.76701 -8.26930 -8.03977 -5.91500 -3.92880 2.64767 2.95224 3.35818 3.42133 3.44890 4.16309 4.31038 4.42888 4.51887 4.57459 4.74605 5.08866 5.13080 5.18133 5.20140 5.26506 5.37327 5.41280 5.43445 5.46746 5.52256 5.54237 5.66211 5.67918 5.79930 5.80207 5.86369 5.99661 6.02892 6.20721 6.26921 6.41105 6.52015 6.67261 6.76445 7.07136 7.14076 7.25918 7.29125 7.43276 7.45699 7.77998 7.95795 8.10294 8.22702 8.52835 9.13865 9.70050 11.19834 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052204 B = 0.002612 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.230384 B =10715.912869 C =11044.033447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.124 3.876 5 N -0.739 5.739 6 C 0.511 3.489 7 O -0.513 6.513 8 C 0.037 3.963 9 N -0.519 5.519 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.054 3.946 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.109 4.109 23 C 0.058 3.942 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.014 0.986 42 H 0.017 0.983 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 18.069 -19.057 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.393 5.393 6 C 0.296 3.704 7 O -0.386 6.386 8 C -0.095 4.095 9 N -0.244 5.244 10 C -0.070 4.070 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.147 4.147 23 C -0.069 4.069 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.058 18.580 -17.729 27.232 hybrid contribution -0.346 -1.602 -1.024 1.932 sum -9.404 16.978 -18.753 26.988 Atomic orbital electron populations 1.21873 0.94668 1.01947 1.02157 1.21359 0.96483 0.96989 0.97900 1.21766 1.01346 0.94967 1.02264 1.21386 1.00050 0.80556 0.97941 1.46055 1.59287 1.09812 1.24173 1.20716 0.79407 0.88209 0.82043 1.90726 1.37972 1.77521 1.32389 1.21937 1.01326 0.91436 0.94797 1.61638 1.05799 1.16751 1.40207 1.22240 0.98612 0.87154 0.98974 1.21543 0.96516 0.99962 0.95664 1.21248 0.94272 0.93737 1.00776 1.19117 0.95803 0.94936 0.91083 1.21260 1.30820 0.96530 1.06515 0.92738 1.25031 0.95388 0.98200 0.95990 1.69974 1.36111 1.36309 1.11149 0.86650 0.78978 0.85577 0.77096 1.20840 1.21336 1.19960 1.21647 0.98759 0.97287 0.96981 1.22208 0.86386 1.00644 0.97685 0.92429 0.92591 0.92321 0.90610 0.92283 0.92190 0.92250 0.91498 0.91604 0.76889 0.88099 0.92595 0.91535 0.95368 0.90781 0.91712 0.93152 0.96775 0.96452 0.93137 0.92275 0.91420 0.95978 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.07 37.16 0.34 -0.41 16 2 C -0.11 -0.60 2.96 -90.62 -0.27 -0.87 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C 0.12 1.03 5.06 -4.04 -0.02 1.01 16 5 N -0.74 -6.40 5.28 -60.29 -0.32 -6.71 16 6 C 0.51 6.44 7.36 -10.99 -0.08 6.36 16 7 O -0.51 -8.85 14.71 5.55 0.08 -8.77 16 8 C 0.04 0.43 5.45 -4.98 -0.03 0.40 16 9 N -0.52 -8.15 4.35 -236.12 -1.03 -9.18 16 10 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 11 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 12 C -0.08 -1.74 2.20 -90.49 -0.20 -1.94 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.57 8.45 -34.44 -0.29 -14.87 16 15 H 0.05 1.50 7.08 -52.49 -0.37 1.12 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.10 5.38 -26.65 -0.14 -2.24 16 23 C 0.06 0.97 5.12 -3.84 -0.02 0.95 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.26 7.18 -51.93 -0.37 -0.11 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 2.28 7.65 -40.82 -0.31 1.96 16 34 H 0.10 0.96 7.98 -51.93 -0.41 0.54 16 35 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 1.50 7.05 -51.93 -0.37 1.13 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 47 H 0.08 1.32 6.06 -51.93 -0.31 1.00 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -33.41 366.95 -9.66 -43.06 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.89 Total: -3.01 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.75 Total: -11.10 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.61 Total: -42.65 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.41 -9.66 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399288539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.398 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds