Wall clock time and date at job start Tue Mar 31 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 C 1.53001 * 109.46715 * 240.00348 * 2 1 3 5 5 N 1.46494 * 109.47490 * 120.00413 * 2 1 3 6 6 C 1.34779 * 120.00047 * 59.99538 * 5 2 1 7 7 O 1.21281 * 120.00060 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00071 * 180.02562 * 6 5 2 9 9 N 1.46900 * 109.47051 * 173.73466 * 8 6 5 10 10 C 1.46845 * 111.00003 * 169.39917 * 9 8 6 11 11 C 1.53034 * 109.52419 * 185.83805 * 10 9 8 12 12 C 1.53121 * 109.27991 * 300.82001 * 11 10 9 13 13 C 1.53004 * 109.57596 * 177.59051 * 12 11 10 14 14 C 1.50701 * 109.47086 * 65.28498 * 13 12 11 15 15 H 1.08001 * 119.99681 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99899 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00177 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47249 * 89.99577 * 18 16 14 20 20 H 1.48503 * 109.47395 * 210.00109 * 18 16 14 21 21 H 1.48507 * 109.46891 * 330.00148 * 18 16 14 22 22 C 1.53118 * 109.16056 * 57.65466 * 12 11 10 23 23 C 1.46852 * 111.00158 * 293.60705 * 9 8 6 24 24 H 1.09005 * 109.46758 * 299.99849 * 1 2 3 25 25 H 1.08996 * 109.47072 * 59.99156 * 1 2 3 26 26 H 1.08996 * 109.47601 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47440 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47089 * 300.00505 * 3 2 1 29 29 H 1.09005 * 109.47094 * 60.00358 * 3 2 1 30 30 H 1.09000 * 109.47344 * 300.00215 * 4 2 1 31 31 H 1.08998 * 109.47397 * 59.99807 * 4 2 1 32 32 H 1.09000 * 109.47465 * 179.97438 * 4 2 1 33 33 H 0.97002 * 119.99990 * 239.99889 * 5 2 1 34 34 H 1.08998 * 109.47339 * 293.73337 * 8 6 5 35 35 H 1.08994 * 109.47144 * 53.73549 * 8 6 5 36 36 H 1.08998 * 109.46215 * 305.85141 * 10 9 8 37 37 H 1.09004 * 109.46398 * 65.82258 * 10 9 8 38 38 H 1.09006 * 109.50339 * 180.87688 * 11 10 9 39 39 H 1.09001 * 109.50248 * 60.76295 * 11 10 9 40 40 H 1.08994 * 109.52188 * 297.74869 * 12 11 10 41 41 H 1.08998 * 109.47259 * 185.28758 * 13 12 11 42 42 H 1.09002 * 109.46648 * 305.28548 * 13 12 11 43 43 H 0.97003 * 120.00090 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.50548 * 182.40565 * 22 12 11 45 45 H 1.08998 * 109.50151 * 62.28580 * 22 12 11 46 46 H 1.08994 * 109.45963 * 294.17856 * 23 9 8 47 47 H 1.09004 * 109.45609 * 54.15671 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1960 6 6 1.6928 -1.9810 1.4093 7 8 0.9958 -2.5705 0.6108 8 6 2.1947 -2.6913 2.6400 9 7 1.5856 -4.0258 2.7178 10 6 2.2327 -4.8400 3.7544 11 6 1.6742 -6.2641 3.7090 12 6 0.1608 -6.2212 3.9381 13 6 -0.4137 -7.6355 3.8345 14 6 0.1284 -8.4814 4.9577 15 1 0.8145 -8.0533 5.6735 16 6 -0.2506 -9.8022 5.0707 17 7 -1.0848 -10.3240 4.1980 18 14 0.4208 -10.8507 6.4633 19 1 -0.4815 -10.7496 7.6384 20 1 0.5023 -12.2664 6.0222 21 1 1.7753 -10.3697 6.8364 22 6 -0.4834 -5.3279 2.8744 23 6 0.1377 -3.9310 2.9440 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6765 -1.7488 -1.2494 31 1 1.6765 -0.2074 -2.1393 32 1 3.1299 -0.7209 -1.2497 33 1 2.5761 -0.2193 1.8345 34 1 3.2789 -2.7895 2.5861 35 1 1.9255 -2.1168 3.5262 36 1 3.3079 -4.8659 3.5773 37 1 2.0364 -4.4040 4.7339 38 1 2.1435 -6.8641 4.4887 39 1 1.8823 -6.7057 2.7344 40 1 -0.0462 -5.8156 4.9284 41 1 -1.5006 -7.5921 3.9042 42 1 -0.1281 -8.0744 2.8785 43 1 -1.3518 -11.2531 4.2778 44 1 -1.5556 -5.2590 3.0577 45 1 -0.3092 -5.7548 1.8867 46 1 -0.0487 -3.4993 3.9273 47 1 -0.3087 -3.2966 2.1782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399295174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:48 Heat of formation + Delta-G solvation = -54.990902 kcal Electronic energy + Delta-G solvation = -23002.823765 eV Core-core repulsion = 19798.605066 eV Total energy + Delta-G solvation = -3204.218700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32400 -38.47004 -36.51067 -34.31726 -32.51049 -31.95550 -30.27348 -28.67742 -27.67119 -27.43177 -26.07920 -23.57198 -22.48108 -21.25975 -20.45402 -19.70400 -18.83727 -17.14143 -16.27820 -16.16343 -15.47809 -15.24687 -14.57084 -14.43285 -14.36371 -14.04746 -13.73713 -13.48231 -13.12722 -12.82880 -12.74075 -12.49027 -12.35021 -12.21950 -12.08740 -11.84270 -11.69886 -11.39532 -11.26901 -11.25387 -11.05263 -10.79464 -10.58391 -10.54543 -10.25600 -9.88529 -9.52703 -9.42796 -9.18895 -8.97085 -8.76164 -8.27159 -8.03126 -5.91787 -3.93171 2.66855 2.94132 3.35645 3.41965 3.44708 4.16254 4.44261 4.51717 4.64304 4.77793 4.83952 5.15740 5.20686 5.22788 5.34493 5.42465 5.43328 5.52598 5.53374 5.54583 5.56562 5.67899 5.73324 5.75192 5.80167 5.99736 6.02731 6.13808 6.19042 6.20937 6.39395 6.46824 6.52190 6.67308 6.76439 7.07135 7.15237 7.27441 7.29776 7.43673 7.50877 7.77731 7.95567 8.10048 8.27949 8.52628 9.13635 9.69831 11.19602 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045267 B = 0.002962 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.400849 B = 9449.986657 C = 9721.758735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 C -0.154 4.154 4 C -0.164 4.164 5 N -0.733 5.733 6 C 0.515 3.485 7 O -0.508 6.508 8 C 0.035 3.965 9 N -0.518 5.518 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.109 4.109 23 C 0.059 3.941 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.014 0.986 42 H 0.017 0.983 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.021 0.979 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.958 24.367 -6.198 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.084 3.916 3 C -0.212 4.212 4 C -0.222 4.222 5 N -0.387 5.387 6 C 0.300 3.700 7 O -0.381 6.381 8 C -0.096 4.096 9 N -0.243 5.243 10 C -0.070 4.070 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.147 4.147 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.039 0.961 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.419 23.516 -7.287 25.713 hybrid contribution 0.538 0.067 1.905 1.980 sum 7.958 23.584 -5.382 25.465 Atomic orbital electron populations 1.22229 0.94298 1.04238 1.01465 1.20284 0.94395 0.91518 0.85372 1.22085 1.01477 0.94729 1.02896 1.22226 1.00771 1.03076 0.96128 1.46214 1.54802 1.12294 1.25402 1.20635 0.80310 0.81181 0.87829 1.90655 1.36082 1.65460 1.45934 1.21960 1.00878 0.91749 0.95056 1.61650 1.04170 1.10351 1.48093 1.22238 0.97897 0.95462 0.91393 1.21540 0.96663 0.92915 1.02542 1.21243 0.94117 0.98305 0.96355 1.19116 0.95777 0.88967 0.97062 1.21264 1.26849 0.95350 1.11677 0.92741 1.25026 0.95337 0.98102 0.96099 1.69973 1.33996 1.13854 1.35754 0.86656 0.79343 0.79769 0.82577 1.20831 1.21325 1.19954 1.21643 0.98580 0.93578 1.00856 1.22200 0.86927 0.99182 0.98546 0.92901 0.92075 0.90100 0.92038 0.90968 0.92063 0.90015 0.92137 0.92878 0.77035 0.88210 0.92721 0.91574 0.95419 0.90820 0.91725 0.93183 0.96791 0.96458 0.93131 0.92322 0.91428 0.96073 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.40 37.16 0.31 -1.24 16 2 C 0.17 1.42 1.06 -131.82 -0.14 1.28 16 3 C -0.15 -0.85 8.59 37.16 0.32 -0.54 16 4 C -0.16 -1.54 8.40 37.16 0.31 -1.23 16 5 N -0.73 -6.28 5.11 -47.61 -0.24 -6.52 16 6 C 0.51 6.20 6.78 -10.99 -0.07 6.13 16 7 O -0.51 -8.06 10.92 5.56 0.06 -8.00 16 8 C 0.04 0.40 5.45 -4.98 -0.03 0.37 16 9 N -0.52 -7.98 4.35 -236.12 -1.03 -9.00 16 10 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 11 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 12 C -0.08 -1.73 2.20 -90.49 -0.20 -1.93 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.56 8.45 -34.44 -0.29 -14.86 16 15 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.08 5.38 -26.65 -0.14 -2.22 16 23 C 0.06 0.96 5.12 -3.83 -0.02 0.94 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 34 H 0.10 0.95 7.98 -51.93 -0.41 0.53 16 35 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 1.29 6.06 -51.93 -0.31 0.97 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -32.60 360.40 -9.16 -41.76 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.77 Total: -1.47 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.33 Total: -12.35 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.53 Total: -42.28 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.06 Total: -8.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.60 -9.16 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399295174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.228 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds